Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.318671510
2R:R:I18 4.925428
3R:R:N22 4.36529
4R:R:V29 1.9375408
5R:R:L32 2.42407
6R:R:L41 2.13409
7R:R:L47 4.2075429
8R:R:D51 5.544529
9R:R:Y104 6.0675488
10R:R:F138 4.585404
11R:R:P140 2.688535
12R:R:I143 4.67434
13R:R:F157 8.3825414
14R:R:V160 3.3825405
15R:R:F174 4.1875418
16R:R:F181 5.768578
17R:R:F184 5.894506
18R:R:Y185 5.43579
19R:R:W238 5.47143718
20R:R:T244 3.39404
21R:R:Q248 4.6075403
22R:R:P276 2.51409
23R:R:I278 4.245408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W265 26.583516.64YesNo003
2R:R:V269 R:R:W265 11.50343.68NoNo063
3R:R:I58 R:R:W265 15.44342.35NoNo073
4L:L:?1 R:R:L94 1001.76YesNo005
5R:R:L129 R:R:L94 99.98142.77NoNo065
6R:R:L129 R:R:T95 98.06262.95NoNo068
7R:R:L47 R:R:T95 93.64754.42YesNo098
8R:R:D51 R:R:L47 37.41625.43YesYes299
9R:R:D51 R:R:N22 15.77876.73YesYes299
10R:R:I18 R:R:N22 13.82274.25YesYes289
11R:R:I18 R:R:L273 17.65092.85YesNo085
12R:R:L17 R:R:L273 13.26381.38NoNo045
13R:R:D51 R:R:S272 12.40695.89YesNo299
14R:R:I18 R:R:S272 10.981710.84YesNo289
15R:R:A15 R:R:I58 10.48813.25NoNo067
16R:R:A15 R:R:S59 10.05031.71NoNo067
17R:R:I19 R:R:S59 12.79811.55NoNo067
18R:R:G55 R:R:I19 13.183.53NoNo086
19R:R:G55 R:R:I18 13.58981.76NoYes088
20R:R:L47 R:R:N275 33.4115.49YesNo299
21R:R:N275 R:R:P276 33.96051.63NoYes099
22R:R:P276 R:R:V25 35.38561.77YesNo099
23R:R:V25 R:R:V29 31.97651.6NoYes098
24R:R:L41 R:R:V29 21.30221.49YesYes098
25R:R:L32 R:R:L41 15.71351.38YesYes079
26R:R:N46 R:R:T95 32.83352.92NoNo098
27R:R:I126 R:R:N46 30.0951.42NoNo079
28R:R:F43 R:R:I126 26.59285.02NoNo087
29R:R:D102 R:R:F43 23.0165.97NoNo098
30R:R:D102 R:R:Y113 19.36485.75NoNo099
31R:R:M117 R:R:Y113 15.6398.38NoNo079
32R:R:L47 R:R:V96 53.6421.49YesNo099
33R:R:D51 R:R:S92 17.56712.94YesNo099
34R:R:I54 R:R:S92 13.26381.55NoNo089
35R:R:I54 R:R:S88 11.08421.55NoNo086
36L:L:?1 R:R:M82 23.18372.69YesNo105
37R:R:M82 R:R:V160 24.1713.04NoYes055
38R:R:C78 R:R:V160 23.45381.71NoYes095
39R:R:C155 R:R:C78 10.70237.28NoNo699
40R:R:C78 R:R:T73 10.70231.69NoNo695
41L:L:?1 R:R:L169 21.00413.52YesNo006
42R:R:I136 R:R:L169 17.4461.43NoNo066
43R:R:G137 R:R:I136 13.81333.53NoNo076
44R:R:G137 R:R:S87 11.89461.86NoNo075
45R:R:F234 R:R:V96 52.12373.93NoNo099
46R:R:F181 R:R:F234 50.58688.57YesNo089
47R:R:F181 R:R:Y185 16.75676.19YesYes789
48R:R:F181 R:R:T100 24.20839.08YesNo788
49R:R:F184 R:R:T100 22.75523.89YesNo068
50L:L:?1 R:R:F157 40.396818.57YesYes104
51R:R:F157 R:R:F161 18.63825.36YesNo044
52R:R:F161 R:R:P140 15.6391.44NoYes045
53R:R:F157 R:R:F158 30.43032.14YesNo043
54R:R:F158 R:R:Y257 28.71654.13NoNo034
55R:R:Q248 R:R:Y257 27.03995.64YesNo034
56R:R:P163 R:R:Q248 13.23583.16NoYes033
57L:L:?1 R:R:F241 10.70239.29YesNo106
58R:R:E261 R:R:F241 13.01235.83NoNo046
59R:R:E261 R:R:T244 19.39274.23NoYes044
60R:R:G245 R:R:T244 10.14341.82NoYes064
61L:L:?1 R:R:R262 10.94456.17YesNo003
62L:L:?1 R:R:F174 17.57647.74YesYes108
63R:R:F174 R:R:L242 16.38414.87YesNo086
64R:R:L242 R:R:S170 14.40016.01NoNo066
65L:L:?1 R:R:W238 30.504813.02YesYes108
66R:R:N271 R:R:W238 25.79172.26NoYes198
67R:R:N271 R:R:S233 24.0221.49NoNo097
68R:R:I278 R:R:S233 22.11253.1YesNo087
69R:R:I278 R:R:W282 16.27242.35YesNo087
70R:R:L256 R:R:Q248 15.37827.99NoYes053
71R:R:R287 R:R:W282 12.39751NoNo087
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:M82 2.69 1 Yes No 0 5 0 1
L:L:?1 R:R:V85 3.79 1 Yes No 0 7 0 1
L:L:?1 R:R:T86 3.75 1 Yes No 0 5 0 1
L:L:?1 R:R:A89 4 1 Yes No 0 6 0 1
L:L:?1 R:R:V93 1.89 1 Yes No 0 7 0 1
L:L:?1 R:R:L94 1.76 1 Yes No 0 5 0 1
L:L:?1 R:R:F157 18.57 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L169 3.52 1 Yes No 0 6 0 1
L:L:?1 R:R:F174 7.74 1 Yes Yes 0 8 0 1
L:L:?1 R:R:W238 13.02 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F241 9.29 1 Yes No 0 6 0 1
L:L:?1 R:R:R262 6.17 1 Yes No 0 3 0 1
L:L:?1 R:R:W265 16.64 1 Yes No 0 3 0 1
R:R:I58 R:R:W265 2.35 0 No No 7 3 2 1
R:R:F157 R:R:M82 7.46 1 Yes No 4 5 1 1
R:R:M82 R:R:V160 3.04 1 No Yes 5 5 1 2
R:R:T86 R:R:V85 1.59 1 No No 5 7 1 1
R:R:V93 R:R:W238 2.45 1 No Yes 7 8 1 1
R:R:L129 R:R:L94 2.77 0 No No 6 5 2 1
R:R:F157 R:R:F158 2.14 1 Yes No 4 3 1 2
R:R:F157 R:R:F161 5.36 1 Yes No 4 4 1 2
R:R:F161 R:R:V160 3.93 0 No Yes 4 5 2 2
R:R:F174 R:R:F175 2.14 1 Yes No 8 5 1 2
R:R:F174 R:R:W238 2 1 Yes Yes 8 8 1 1
R:R:F174 R:R:L242 4.87 1 Yes No 8 6 1 2
R:R:S237 R:R:W238 3.71 1 No Yes 7 8 2 1
R:R:N271 R:R:S237 8.94 1 No No 9 7 2 2
R:R:F241 R:R:W238 5.01 1 No Yes 6 8 1 1
R:R:G268 R:R:W238 9.85 0 No Yes 7 8 2 1
R:R:N271 R:R:W238 2.26 1 No Yes 9 8 2 1
R:R:E261 R:R:F241 5.83 0 No No 4 6 2 1
R:R:E261 R:R:R262 4.65 0 No No 4 3 2 1
R:R:V269 R:R:W265 3.68 0 No No 6 3 2 1
R:R:L169 R:R:T168 1.47 0 No No 6 4 1 2
R:R:I136 R:R:L169 1.43 0 No No 6 6 2 1
L:L:?1 R:R:A90 1 1 Yes No 0 7 0 1
L:L:?1 R:R:S156 0.95 1 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9L79_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.49
Number of Linked Nodes 227
Number of Links 243
Number of Hubs 23
Number of Links mediated by Hubs 99
Number of Communities 9
Number of Nodes involved in Communities 41
Number of Links involved in Communities 50
Path Summary
Number Of Nodes in MetaPath 72
Number Of Links MetaPath 71
Number of Shortest Paths 23702
Length Of Smallest Path 3
Average Path Length 11.5388
Length of Longest Path 23
Minimum Path Strength 1.25
Average Path Strength 4.22106
Maximum Path Strength 13.8133
Minimum Path Correlation 0.7
Average Path Correlation 0.944258
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.88235
Average % Of Corr. Nodes 65.9353
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.0184
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code8WL
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code8WL
NameN-(2-fluoranyl-4-methylsulfonyl-phenyl)-5-nitro-6-[4-(3-propan-2-yl-1,2,4-oxadiazol-5-yl)piperidin-1-yl]pyrimidin-4-amine
SynonymsAR231453
Identifier
FormulaC21 H24 F N7 O5 S
Molecular Weight505.523
SMILES
PubChem24939268
Formal Charge0
Total Atoms59
Total Chiral Atoms0
Total Bonds62
Total Aromatic Bonds17

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDV5
Sequence
>9L79_nogp_Chain_R
FSFGVILAV LASLIIATN TLVAVAVLL LIHKNDGVS LCFTLNLAV 
ADTLIGVAI SGLLTDQTQ KTLCSLRMA FVTSSAAAS VLTVMLITF 
DRYLAIKQP FRYLKIMSG FVAGACIAG LWLVSYLIG FLPLGIPMF 
QQTAYKGQC SFFAVFHPH FVLTLSCVG FFPAMLLFV FFYCDMLKI 
ASMHSQQIR KMEHAGAMF KALRTVSVL IGSFALSWT PFLITGIVQ 
VACQECHLY LVLERYLWL LGVGNSLLN PLIYAYWQK EVRLQLYHM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XZ5ALipidGPR119GPR119Homo sapiensLysophosphatidylcholine-Gs/β1/γ23.12022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ5 (No Gprot) ALipidGPR119GPR119Homo sapiensLysophosphatidylcholine-3.12022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ6ALipidGPR119GPR119Homo sapiensAPD668-Gs/β1/γ22.82022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ6 (No Gprot) ALipidGPR119GPR119Homo sapiensAPD668-2.82022-08-24doi.org/10.1038/s41594-022-00816-5
7WCMALipidGPR119GPR119Homo sapiensMBX-2982-Gs/β1/γ22.332022-12-21doi.org/10.1038/s41467-022-34696-6
7WCM (No Gprot) ALipidGPR119GPR119Homo sapiensMBX-2982-2.332022-12-21doi.org/10.1038/s41467-022-34696-6
7WCNALipidGPR119GPR119Homo sapiensAR231453-Gs/β1/γ22.872022-12-21doi.org/10.1038/s41467-022-34696-6
7WCN (No Gprot) ALipidGPR119GPR119Homo sapiensAR231453-2.872022-12-21doi.org/10.1038/s41467-022-34696-6
8ZR5ALipidGPR119GPR119Homo sapiensFiruglipel-Gs/β1/γ23.312024-06-19To be published
8ZR5 (No Gprot) ALipidGPR119GPR119Homo sapiensFiruglipel-3.312024-06-19To be published
8ZRKALipidGPR119GPR119Homo sapiensGSK1292263-Gs/β1/γ22.822024-06-19To be published
8ZRK (No Gprot) ALipidGPR119GPR119Homo sapiensGSK1292263-2.822024-06-19To be published
8VHFALipidGPR119GPR119Homo sapiensMBX-2982-Gs/β1/γ23.512024-10-30doi.org/10.1016/j.str.2024.10.004
8VHF (No Gprot) ALipidGPR119GPR119Homo sapiensMBX-2982-3.512024-10-30doi.org/10.1016/j.str.2024.10.004
9L79ALipidGPR119GPR119Homo sapiensAR231453-chim(NtGi1-Gs)/β1/γ22.982025-12-31To be published
9L79 (No Gprot) ALipidGPR119GPR119Homo sapiensAR231453-2.982025-12-31To be published
9L80ALipidGPR119GPR119Homo sapiens-Atazanavirchim(NtGi1-Gs)/β1/γ23.332025-12-31To be published
9L80 (No Gprot) ALipidGPR119GPR119Homo sapiens-Atazanavir3.332025-12-31To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9L79_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.