Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F51 5.996546
2R:R:L54 4.345406
3R:R:L75 8.765429
4R:R:Y80 6.03628
5R:R:L86 4.885439
6R:R:D90 6.3525409
7R:R:E100 6.866515
8R:R:T101 3.235406
9R:R:D126 8.654514
10R:R:Y148 13.14458
11R:R:F152 11.0275456
12R:R:Y157 7.204509
13R:R:W174 4.7475409
14R:R:F184 4.36167604
15R:R:I185 4.67515
16R:R:F201 11.34406
17R:R:Y212 5.195409
18R:R:L250 4.445438
19R:R:W258 7.18333607
20R:R:F261 5.62515
21R:R:C271 4.9775465
22R:R:F284 8.72167613
23R:R:Y287 8.34405
24R:R:I289 4.15445
25R:R:D298 6.79439
26R:R:Y302 5.526539
27R:R:F313 4.46406
28L:L:?1 12.1625410
29L:L:?4 7.70143710
30L:L:R5 6.358510
31L:L:W6 7.538510
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F51 R:R:M292 24.8387.46YesNo065
2R:R:M292 R:R:N97 40.32398.41NoNo056
3R:R:I129 R:R:N97 41.52199.91NoNo056
4L:L:?4 R:R:I129 46.113112.09YesNo005
5L:L:?4 R:R:F284 11.16715.16YesYes103
6R:R:F284 R:R:H264 27.249410.18YesNo034
7R:R:H264 R:R:Y287 24.55535.44NoYes045
8R:R:L54 R:R:M292 15.5275.65YesNo065
9R:R:F51 R:R:T101 16.33937.78YesYes066
10R:R:I296 R:R:L54 10.64784.28NoYes066
11R:R:F261 R:R:F284 21.82016.43YesYes153
12R:R:F261 R:R:I291 99.74296.28YesNo056
13R:R:I291 R:R:W258 10010.57NoYes067
14R:R:S136 R:R:W258 54.98714.94NoYes097
15R:R:D90 R:R:S136 54.26744.42YesNo099
16R:R:D90 R:R:N62 67.98466.73YesNo099
17R:R:A87 R:R:N62 64.77644.69NoNo099
18R:R:A87 R:R:V65 59.88693.39NoNo099
19R:R:F313 R:R:V65 56.57586.55YesNo069
20R:R:A68 R:R:F313 44.66322.77NoYes076
21R:R:A68 R:R:T312 42.92033.36NoNo077
22R:R:I316 R:R:T312 17.43963.04NoNo077
23R:R:I316 R:R:V67 11.71723.07NoNo074
24R:R:N72 R:R:T312 24.92548.77NoNo077
25R:R:L75 R:R:N72 21.203113.73YesNo097
26R:R:P78 R:R:Y157 11.24424.17NoYes069
27R:R:T150 R:R:Y157 34.43199.99NoYes089
28R:R:I151 R:R:T150 36.14914.56NoNo088
29R:R:I151 R:R:M215 55.83034.37NoNo089
30R:R:M215 R:R:Y212 80.48333.59NoYes099
31R:R:M208 R:R:Y212 53.74295.99NoYes089
32R:R:F254 R:R:M208 54.4014.98NoNo088
33R:R:F254 R:R:W258 58.308511.02NoYes087
34R:R:D90 R:R:L86 40.69415.43YesYes099
35R:R:L86 R:R:S139 25.95374.5YesNo098
36R:R:N294 R:R:W258 30.42169.04NoYes097
37R:R:D298 R:R:N294 25.146513.46YesNo099
38R:R:D298 R:R:L86 28.38054.07YesYes399
39R:R:S139 R:R:S85 23.64524.89NoNo089
40R:R:S85 R:R:W174 21.32654.94NoYes099
41L:L:?4 R:R:E100 10.20575.61YesYes105
42L:L:?4 R:R:D126 23.763514.95YesYes104
43R:R:D126 R:R:I185 22.49364.2YesYes145
44L:L:?4 L:L:R5 24.99235.15YesYes100
45L:L:R5 R:R:I185 22.4013.76YesYes105
46R:R:C130 R:R:I185 37.61953.27NoYes045
47R:R:C130 R:R:G181 20.4373.92NoNo046
48R:R:C130 R:R:F184 15.22374.19NoYes044
49R:R:A135 R:R:W174 14.30857.78NoYes079
50R:R:A135 R:R:C177 11.94863.61NoNo077
51R:R:L140 R:R:Y302 19.93324.69NoYes389
52R:R:D298 R:R:I301 27.43444.2YesNo399
53R:R:F152 R:R:Y148 21.131120.63YesYes568
54R:R:M215 R:R:Y148 24.49874.79NoYes098
55R:R:F152 R:R:I151 22.0726.28YesNo068
56R:R:M161 R:R:Y157 11.31629.58NoYes079
57R:R:G181 R:R:S131 17.91771.86NoNo064
58R:R:S131 R:R:T178 15.38821.6NoNo043
59R:R:I182 R:R:T178 12.84833.04NoNo033
60R:R:L250 R:R:Y212 39.98975.86YesYes089
61R:R:I301 R:R:L250 24.5454.28NoYes398
62R:R:G243 R:R:T246 11.6353.64NoNo089
63R:R:L250 R:R:T246 13.94342.95YesNo089
64R:R:F152 R:R:M218 38.42162.49YesNo065
65R:R:L221 R:R:M218 28.05145.65NoNo055
66R:R:K224 R:R:L221 24.56562.82NoNo055
67R:R:K224 R:R:R220 21.06944.95NoNo055
68R:R:N240 R:R:R220 10.51411.21NoNo075
69R:R:C257 R:R:N294 14.76097.87NoNo089
70R:R:F280 R:R:Y287 16.221114.44NoYes025
71R:R:F267 R:R:F280 13.367611.79NoNo042
72R:R:C257 R:R:V253 12.95121.71NoNo086
73L:L:?4 R:R:F261 78.60675.16YesYes105
74R:R:L250 R:R:Y302 17.86124.69YesYes389
75R:R:L140 R:R:L86 17.73785.54NoYes389
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F51 R:R:V46 3.93 4 Yes No 6 5 1 2
R:R:N285 R:R:V46 5.91 0 No No 4 5 1 2
R:R:I289 R:R:V46 4.61 4 Yes No 5 5 2 2
R:R:F51 R:R:T101 7.78 4 Yes Yes 6 6 1 2
R:R:F51 R:R:I289 6.28 4 Yes Yes 6 5 1 2
R:R:F51 R:R:M292 7.46 4 Yes No 6 5 1 2
L:L:H3 R:R:F51 4.53 0 No Yes 0 6 0 1
R:R:I129 R:R:S96 4.64 0 No No 5 6 1 2
R:R:I129 R:R:N97 9.91 0 No No 5 6 1 2
R:R:M292 R:R:N97 8.41 0 No No 5 6 2 2
R:R:D122 R:R:E100 3.9 1 No Yes 8 5 1 1
R:R:E100 R:R:I125 9.56 1 Yes No 5 5 1 2
R:R:D126 R:R:E100 7.8 1 Yes Yes 4 5 1 1
L:L:?1 R:R:E100 7.46 1 Yes Yes 0 5 0 1
L:L:?4 R:R:E100 5.61 1 Yes Yes 0 5 0 1
L:L:?1 R:R:I104 9.37 1 Yes No 0 4 0 1
R:R:D122 R:R:D126 7.98 1 No Yes 8 4 1 1
L:L:?1 R:R:D122 22.91 1 Yes No 0 8 0 1
R:R:D126 R:R:I185 4.2 1 Yes Yes 4 5 1 1
L:L:?4 R:R:D126 14.95 1 Yes Yes 0 4 0 1
L:L:R5 R:R:D126 8.34 1 Yes Yes 0 4 0 1
R:R:I185 R:R:S127 9.29 1 Yes No 5 5 1 2
L:L:?4 R:R:I129 12.09 1 Yes No 0 5 0 1
L:L:R5 R:R:I185 3.76 1 Yes Yes 0 5 0 1
R:R:D189 R:R:S188 4.42 0 No No 5 4 2 1
L:L:R5 R:R:S188 10.54 1 Yes No 0 4 0 1
L:L:W6 R:R:S188 6.18 1 Yes No 0 4 0 1
R:R:I194 R:R:L265 7.14 0 No No 4 5 1 2
R:R:I194 R:R:I269 5.89 0 No No 4 4 1 2
L:L:W6 R:R:I194 8.22 1 Yes No 0 4 0 1
R:R:F261 R:R:F262 5.36 1 Yes No 5 5 1 2
R:R:F261 R:R:L265 4.87 1 Yes No 5 5 1 2
R:R:F261 R:R:F284 6.43 1 Yes Yes 5 3 1 1
R:R:F261 R:R:I291 6.28 1 Yes No 5 6 1 2
L:L:?4 R:R:F261 5.16 1 Yes Yes 0 5 0 1
R:R:F284 R:R:H264 10.18 1 Yes No 3 4 1 2
L:L:W6 R:R:Y268 13.5 1 Yes No 0 5 0 1
R:R:F284 R:R:L288 13.4 1 Yes No 3 4 1 2
L:L:?4 R:R:F284 5.16 1 Yes Yes 0 3 0 1
L:L:K7 R:R:F284 13.65 0 No Yes 0 3 0 1
L:L:H3 R:R:N285 20.41 0 No No 0 4 0 1
R:R:F284 R:R:Q43 3.51 1 Yes No 3 3 1 2
R:R:C130 R:R:I185 3.27 0 No Yes 4 5 2 1
R:R:I185 R:R:N123 2.83 1 Yes No 5 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7F55_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 250
Number of Links 269
Number of Hubs 31
Number of Links mediated by Hubs 121
Number of Communities 6
Number of Nodes involved in Communities 32
Number of Links involved in Communities 44
Path Summary
Number Of Nodes in MetaPath 76
Number Of Links MetaPath 75
Number of Shortest Paths 44075
Length Of Smallest Path 3
Average Path Length 13.9782
Length of Longest Path 28
Minimum Path Strength 1.405
Average Path Strength 6.07788
Maximum Path Strength 19.29
Minimum Path Correlation 0.7
Average Path Correlation 0.932667
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 52.135
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 37.85
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNLE
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNLE
NameNorleucine
Synonyms
  • L-NORLEUCINE
  • Norleucine
Identifier
FormulaC6 H13 N O2
Molecular Weight131.173
SMILES
PubChem21236
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds21
Total Aromatic Bonds0

CodeDPN
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeDPN
NameD-Phenylalanine
SynonymsD-Phenylalanine
Identifier
FormulaC9 H11 N O2
Molecular Weight165.189
SMILES
PubChem71567
Formal Charge0
Total Atoms23
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32245
Sequence
>7F55_nogp_Chain_R
GCYEQLFVS PEVFVTLGV ISLLENILV IVAIAKNKN LHSPMYFFI 
CSLAVADML VSVSNGSET IVITLLNST SFTVNIDNV IDSVICSSL 
LASICSLLS IAVDRYFTI FYALQYHNI MTVKRVGII ISCIWAACT 
VSGILFIIY SDSSAVIIC LITMFFTML ALMASLYVH MFLMARLHI 
KRIAVLPGT QGANMKGAI TLTILIGVF VVCWAPFFL HLIFYISCP 
QNPYCVCFM SHFNLYLIL IMCNSIIDP LIYALRSQE LRKTFKEII 
CCY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6W25APeptideMelanocortinMC4Homo sapiensSHU9119Ca-2.752020-04-29doi.org/10.1126/science.aaz8995
7F53APeptideMelanocortinMC4Homo sapiensα-MSH-Gs/β1/γ232021-11-03doi.org/10.1038/s41422-021-00552-3
7F53 (No Gprot) APeptideMelanocortinMC4Homo sapiensα-MSH-32021-11-03doi.org/10.1038/s41422-021-00552-3
7F54APeptideMelanocortinMC4Homo sapiensAfamelanotide-Gs/β1/γ232021-11-03doi.org/10.1038/s41422-021-00552-3
7F54 (No Gprot) APeptideMelanocortinMC4Homo sapiensAfamelanotide-32021-11-03doi.org/10.1038/s41422-021-00552-3
7F55APeptideMelanocortinMC4Homo sapiensBremelanotide-Gs/β1/γ23.12021-11-03doi.org/10.1038/s41422-021-00552-3
7F55 (No Gprot) APeptideMelanocortinMC4Homo sapiensBremelanotide-3.12021-11-03doi.org/10.1038/s41422-021-00552-3
7F58APeptideMelanocortinMC4Homo sapiensTHIQ-Gs/β1/γ23.12021-11-03doi.org/10.1038/s41422-021-00552-3
7F58 (No Gprot) APeptideMelanocortinMC4Homo sapiensTHIQ-3.12021-11-03doi.org/10.1038/s41422-021-00552-3
7PIUAPeptideMelanocortinMC4Homo sapiensSetmelanotide-Gs/β1/γ22.582021-11-17doi.org/10.1038/s41422-021-00569-8
7PIU (No Gprot) APeptideMelanocortinMC4Homo sapiensSetmelanotide-2.582021-11-17doi.org/10.1038/s41422-021-00569-8
7PIVAPeptideMelanocortinMC4Homo sapiensSetmelanotide-Gs/β1/γ22.862021-11-17doi.org/10.1038/s41422-021-00569-8
7PIV (No Gprot) APeptideMelanocortinMC4Homo sapiensSetmelanotide-2.862021-11-17doi.org/10.1038/s41422-021-00569-8
7AUEAPeptideMelanocortinMC4Homo sapiensSetmelanotide-chim(NtGi1L-Gs)/β1/γ22.972021-04-28doi.org/10.1126/science.abf7958
7AUE (No Gprot) APeptideMelanocortinMC4Homo sapiensSetmelanotide-2.972021-04-28doi.org/10.1126/science.abf7958
8WKYAPeptideMelanocortinMC4Homo sapiensPG-934--2.92024-08-07doi.org/10.1021/acs.jmedchem.3c01822
8WKZAPeptideMelanocortinMC4Homo sapiensSBL-MC-31--3.32024-08-07doi.org/10.1021/acs.jmedchem.3c01822
8QJ2APeptideMelanocortinMC4Homo sapienspN162-Gs3.42024-09-25doi.org/10.1038/s41467-024-50827-7
8QJ2 (No Gprot) APeptideMelanocortinMC4Homo sapienspN162-3.42024-09-25doi.org/10.1038/s41467-024-50827-7
9K3KAPeptideMelanocortinMC4Homo sapiens--chim(NtGi1-Gs)/β1/γ23.122025-08-06doi.org/10.1016/j.str.2025.03.004
9K3K (No Gprot) APeptideMelanocortinMC4Homo sapiens--3.122025-08-06doi.org/10.1016/j.str.2025.03.004




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7F55_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.