Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:H4 12.2425420
2L:L:?5 7.64167610
3L:L:R6 9.30667610
4L:L:W7 9.1875410
5R:R:F51 9.13526
6R:R:S58 5.13408
7R:R:N62 7.445409
8R:R:L75 8.14409
9R:R:M79 5.19408
10R:R:Y80 6.7225408
11R:R:F82 6.3075408
12R:R:L86 5.6225409
13R:R:D126 8.805414
14R:R:D146 5.895469
15R:R:R147 5.8875439
16R:R:Y148 11.0725478
17R:R:F152 15.165476
18R:R:Y157 8.388569
19R:R:W174 4.7475409
20R:R:F184 5.90429704
21R:R:I185 5.39415
22R:R:F201 9.06333616
23R:R:Y212 4.87571739
24R:R:F216 2.9175406
25R:R:L247 2.8775408
26R:R:F254 6.405418
27R:R:W258 7.215817
28R:R:F261 5.568515
29R:R:F262 11.2925415
30R:R:L265 4.575415
31R:R:F267 5.895444
32R:R:C271 4.1175445
33R:R:F284 7.64833613
34R:R:Y287 9.04405
35R:R:Y302 4.725639
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?5 R:R:F284 12.12524.13YesYes103
2L:L:?5 R:R:D126 40.471310.35YesYes104
3R:R:N285 R:R:Q43 12.94937.92NoNo043
4R:R:F284 R:R:Q43 14.62233.51YesNo033
5L:L:?5 R:R:E100 14.33244.49YesNo005
6L:L:?5 R:R:I129 10.294814.51YesNo005
7L:L:?5 R:R:F261 93.28316.19YesYes105
8R:R:D126 R:R:I185 35.17894.2YesYes145
9R:R:F284 R:R:H264 43.200315.84YesNo034
10R:R:H264 R:R:Y287 33.77926.53NoYes045
11R:R:F261 R:R:F262 85.01337.5YesYes155
12R:R:F262 R:R:W258 63.21854.01YesYes157
13R:R:N294 R:R:W258 52.343912.43NoYes097
14R:R:D298 R:R:N294 51.151212.12NoNo099
15R:R:D298 R:R:D90 56.59686.65NoNo099
16R:R:D90 R:R:N62 38.43814.81NoYes099
17R:R:N62 R:R:S58 15.59554.47YesYes098
18R:R:I296 R:R:S58 20.46964.64NoYes068
19R:R:F261 R:R:I291 54.43933.77YesNo056
20R:R:I291 R:R:W258 54.60497.05NoYes067
21R:R:D90 R:R:S295 16.74268.83NoNo099
22R:R:S295 R:R:S58 15.1114.89NoYes098
23R:R:I296 R:R:L54 17.0784.28NoNo066
24R:R:M91 R:R:N62 12.19985.61NoYes079
25R:R:I63 R:R:M91 10.48122.92NoNo047
26R:R:N62 R:R:P299 10.48124.89YesNo099
27R:R:F201 R:R:F262 36.102430.01YesYes165
28R:R:F201 R:R:F254 35.1544.29YesYes168
29R:R:F254 R:R:M208 1006.22YesNo088
30R:R:M208 R:R:Y212 99.0894.79NoYes089
31R:R:R147 R:R:Y212 71.09918.23YesYes399
32R:R:M79 R:R:R147 76.4087.44YesYes089
33R:R:M79 R:R:Y80 46.38074.79YesYes088
34R:R:L75 R:R:Y80 28.78919.38YesYes098
35R:R:L309 R:R:L75 12.87484.15NoYes089
36R:R:A303 R:R:L309 21.83623.15NoNo088
37R:R:A303 R:R:V65 18.21683.39NoNo089
38R:R:A87 R:R:V65 14.58923.39NoNo099
39R:R:A87 R:R:I66 10.95333.25NoNo097
40R:R:F254 R:R:W258 65.93519.02YesYes187
41R:R:S306 R:R:Y80 14.28287.63NoYes078
42R:R:L309 R:R:S306 12.64296.01NoNo087
43R:R:D146 R:R:M79 33.53074.16YesYes098
44R:R:D146 R:R:F82 15.03238.36YesYes098
45R:R:F82 R:R:V166 10.79595.24YesNo087
46R:R:D298 R:R:L86 45.20876.79NoYes099
47R:R:L86 R:R:S139 24.71844.5YesNo098
48R:R:S139 R:R:S85 23.16554.89NoNo089
49R:R:I170 R:R:S85 10.90364.64NoNo079
50R:R:F82 R:R:I170 10.07125.02YesNo087
51R:R:S85 R:R:W174 14.10884.94NoYes099
52R:R:L140 R:R:L86 10.24936.92NoYes089
53R:R:I143 R:R:L86 21.66644.28NoYes099
54R:R:E100 R:R:I125 12.44414.1NoNo055
55R:R:C130 R:R:I185 64.04264.91NoYes045
56R:R:C130 R:R:G181 34.28443.92NoNo046
57R:R:C130 R:R:F184 26.56534.19NoYes044
58R:R:Y212 R:R:Y302 15.58723.97YesYes399
59R:R:D146 R:R:M161 11.12724.16YesNo697
60R:R:M215 R:R:Y212 28.79743.59NoYes099
61R:R:M215 R:R:Y148 26.62333.59NoYes098
62R:R:F152 R:R:Y148 17.848322.69YesYes768
63R:R:F152 R:R:M218 13.45459.95YesNo065
64R:R:G181 R:R:S131 30.50771.86NoNo064
65R:R:S131 R:R:T178 26.72273.2NoNo043
66R:R:I182 R:R:T178 22.92941.52NoNo033
67R:R:I182 R:R:I186 19.12792.94NoNo034
68R:R:I186 R:R:Y187 15.3187.25NoNo044
69R:R:L247 R:R:Y212 24.20083.52YesYes089
70R:R:F216 R:R:L247 15.40093.65YesYes068
71R:R:F280 R:R:Y287 20.154917.54NoYes025
72R:R:F267 R:R:F280 16.16288.57YesNo442
73R:R:I301 R:R:Y302 16.04274.84NoYes099
74R:R:C293 R:R:I289 12.35711.64NoNo045
75R:R:C293 R:R:I297 12.70081.64NoNo047
76R:R:I297 R:R:I301 14.81282.94NoNo079
77R:R:L54 R:R:T53 13.67821.47NoNo063
78R:R:T53 R:R:V52 10.271.59NoNo034
79L:L:?5 L:L:R6 44.47996.18YesYes100
80L:L:R6 R:R:I185 36.10656.26YesYes105
81R:R:F261 R:R:F284 48.0044.29YesYes153
82R:R:I194 R:R:L265 13.04045.71NoYes045
83R:R:F262 R:R:L265 13.79413.65YesYes155
84R:R:I143 R:R:R147 11.78153.76NoYes399
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:R1 R:R:D122 8.34 0 No No 0 8 0 1
L:L:?3 R:R:I104 5.81 0 No No 0 4 0 1
L:L:H4 R:R:F51 22.63 2 Yes Yes 0 6 0 1
L:L:H4 R:R:T101 6.85 2 Yes No 0 6 0 1
L:L:H4 R:R:N285 5.1 2 Yes No 0 4 0 1
L:L:?5 R:R:E100 4.49 1 Yes No 0 5 0 1
L:L:?5 R:R:D126 10.35 1 Yes Yes 0 4 0 1
L:L:?5 R:R:I129 14.51 1 Yes No 0 5 0 1
L:L:?5 R:R:F261 6.19 1 Yes Yes 0 5 0 1
L:L:?5 R:R:F284 4.13 1 Yes Yes 0 3 0 1
L:L:R6 R:R:N123 4.82 1 Yes No 0 5 0 1
L:L:R6 R:R:D126 16.68 1 Yes Yes 0 4 0 1
L:L:R6 R:R:I185 6.26 1 Yes Yes 0 5 0 1
L:L:R6 R:R:S188 7.91 1 Yes No 0 4 0 1
L:L:W7 R:R:S188 3.71 1 Yes No 0 4 0 1
L:L:W7 R:R:I194 9.4 1 Yes No 0 4 0 1
L:L:W7 R:R:Y268 9.65 1 Yes No 0 5 0 1
L:L:C8 R:R:F284 8.38 0 No Yes 0 3 0 1
R:R:N285 R:R:Q43 7.92 2 No No 4 3 1 2
R:R:F51 R:R:V46 6.55 2 Yes No 6 5 1 2
R:R:I289 R:R:V46 6.14 2 No No 5 5 2 2
R:R:F51 R:R:T101 9.08 2 Yes No 6 6 1 1
R:R:F51 R:R:N285 3.62 2 Yes No 6 4 1 1
R:R:F51 R:R:I289 3.77 2 Yes No 6 5 1 2
R:R:I129 R:R:S96 4.64 0 No No 5 6 1 2
R:R:I129 R:R:N97 11.33 0 No No 5 6 1 2
R:R:E100 R:R:I125 4.1 0 No No 5 5 1 2
R:R:N123 R:R:V119 5.91 0 No No 5 3 1 2
R:R:D122 R:R:D126 3.99 0 No Yes 8 4 1 1
R:R:D126 R:R:I185 4.2 1 Yes Yes 4 5 1 1
R:R:I185 R:R:S127 6.19 1 Yes No 5 5 1 2
R:R:C130 R:R:I185 4.91 0 No Yes 4 5 2 1
R:R:I194 R:R:L265 5.71 0 No Yes 4 5 1 2
R:R:I194 R:R:I269 8.83 0 No No 4 4 1 2
R:R:F261 R:R:F262 7.5 1 Yes Yes 5 5 1 2
R:R:F261 R:R:L265 6.09 1 Yes Yes 5 5 1 2
R:R:F261 R:R:F284 4.29 1 Yes Yes 5 3 1 1
R:R:F261 R:R:I291 3.77 1 Yes No 5 6 1 2
R:R:F262 R:R:L265 3.65 1 Yes Yes 5 5 2 2
R:R:F284 R:R:H264 15.84 1 Yes No 3 4 1 2
R:R:F284 R:R:L288 9.74 1 Yes No 3 4 1 2
R:R:F284 R:R:Q43 3.51 1 Yes No 3 3 1 2
R:R:D189 R:R:S188 1.47 0 No No 5 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7PIU_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.61
Number of Linked Nodes 238
Number of Links 261
Number of Hubs 35
Number of Links mediated by Hubs 131
Number of Communities 7
Number of Nodes involved in Communities 39
Number of Links involved in Communities 51
Path Summary
Number Of Nodes in MetaPath 85
Number Of Links MetaPath 84
Number of Shortest Paths 59528
Length Of Smallest Path 3
Average Path Length 13.5375
Length of Longest Path 29
Minimum Path Strength 1.22
Average Path Strength 6.40486
Maximum Path Strength 19.83
Minimum Path Correlation 0.7
Average Path Correlation 0.918708
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 6.25
Average % Of Corr. Nodes 43.5555
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.2733
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeDAL
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeDAL
NameD-Alanine
Synonyms(R)-alanine
Identifier
FormulaC3 H7 N O2
Molecular Weight89.093
SMILES
PubChem71080
Formal Charge0
Total Atoms13
Total Chiral Atoms1
Total Bonds12
Total Aromatic Bonds0

CodeDPN
PDB ResiduesL:L:?5
Environment DetailsOpen EMBL-EBI Page
CodeDPN
NameD-Phenylalanine
SynonymsD-Phenylalanine
Identifier
FormulaC9 H11 N O2
Molecular Weight165.189
SMILES
PubChem71567
Formal Charge0
Total Atoms23
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32245
Sequence
>7PIU_nogp_Chain_R
CYEQLFVSP EVFVTLGVI SLLENILVI VAIAKNKNL HSPMYFFIC 
SLAVADMLV SVSNGSETI VITLLFTVN IDNVIDSVI CSSLLASIC 
SLLSIAVDR YFTIFYALQ YHNIMTVKR VGIIISCIW AACTVSGIL 
FIIYSDSSA VIICLITMF FTMLALMAS LYVHMFLMA RLHIKRIAV 
LPNMKGAIT LTILIGVFV VCWAPFFLH LIFYISCPQ NPYCVCFMS 
HFNLYLILI MCNSIIDPL IYALRSQEL RKTFKEI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6W25APeptideMelanocortinMC4Homo sapiensSHU9119Ca-2.752020-04-29doi.org/10.1126/science.aaz8995
7F53APeptideMelanocortinMC4Homo sapiensα-MSH-Gs/β1/γ232021-11-03doi.org/10.1038/s41422-021-00552-3
7F53 (No Gprot) APeptideMelanocortinMC4Homo sapiensα-MSH-32021-11-03doi.org/10.1038/s41422-021-00552-3
7F54APeptideMelanocortinMC4Homo sapiensAfamelanotide-Gs/β1/γ232021-11-03doi.org/10.1038/s41422-021-00552-3
7F54 (No Gprot) APeptideMelanocortinMC4Homo sapiensAfamelanotide-32021-11-03doi.org/10.1038/s41422-021-00552-3
7F55APeptideMelanocortinMC4Homo sapiensBremelanotide-Gs/β1/γ23.12021-11-03doi.org/10.1038/s41422-021-00552-3
7F55 (No Gprot) APeptideMelanocortinMC4Homo sapiensBremelanotide-3.12021-11-03doi.org/10.1038/s41422-021-00552-3
7F58APeptideMelanocortinMC4Homo sapiensTHIQ-Gs/β1/γ23.12021-11-03doi.org/10.1038/s41422-021-00552-3
7F58 (No Gprot) APeptideMelanocortinMC4Homo sapiensTHIQ-3.12021-11-03doi.org/10.1038/s41422-021-00552-3
7PIUAPeptideMelanocortinMC4Homo sapiensSetmelanotide-Gs/β1/γ22.582021-11-17doi.org/10.1038/s41422-021-00569-8
7PIU (No Gprot) APeptideMelanocortinMC4Homo sapiensSetmelanotide-2.582021-11-17doi.org/10.1038/s41422-021-00569-8
7PIVAPeptideMelanocortinMC4Homo sapiensSetmelanotide-Gs/β1/γ22.862021-11-17doi.org/10.1038/s41422-021-00569-8
7PIV (No Gprot) APeptideMelanocortinMC4Homo sapiensSetmelanotide-2.862021-11-17doi.org/10.1038/s41422-021-00569-8
7AUEAPeptideMelanocortinMC4Homo sapiensSetmelanotide-chim(NtGi1L-Gs)/β1/γ22.972021-04-28doi.org/10.1126/science.abf7958
7AUE (No Gprot) APeptideMelanocortinMC4Homo sapiensSetmelanotide-2.972021-04-28doi.org/10.1126/science.abf7958
8WKYAPeptideMelanocortinMC4Homo sapiensPG-934--2.92024-08-07doi.org/10.1021/acs.jmedchem.3c01822
8WKZAPeptideMelanocortinMC4Homo sapiensSBL-MC-31--3.32024-08-07doi.org/10.1021/acs.jmedchem.3c01822
8QJ2APeptideMelanocortinMC4Homo sapienspN162-Gs3.42024-09-25doi.org/10.1038/s41467-024-50827-7
8QJ2 (No Gprot) APeptideMelanocortinMC4Homo sapienspN162-3.42024-09-25doi.org/10.1038/s41467-024-50827-7
9K3KAPeptideMelanocortinMC4Homo sapiens--chim(NtGi1-Gs)/β1/γ23.122025-08-06doi.org/10.1016/j.str.2025.03.004
9K3K (No Gprot) APeptideMelanocortinMC4Homo sapiens--3.122025-08-06doi.org/10.1016/j.str.2025.03.004




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7PIU_nogp.zip



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