Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:D865 6.2775425
2R:R:L879 3.625409
3R:R:T885 4.33409
4R:R:F886 5.208509
5R:R:F889 4.724508
6R:R:L892 4.884508
7R:R:R896 6.336519
8R:R:N897 5.0975408
9R:R:I899 3.828519
10R:R:H900 12.7625419
11R:R:E911 5.336529
12R:R:Q923 4.005405
13R:R:F930 4.0025405
14R:R:F936 5.4175407
15R:R:F937 10.065407
16R:R:W944 9.92519
17R:R:M945 5.655408
18R:R:F946 4.406519
19R:R:L947 5.688518
20R:R:E948 6.31419
21R:R:Q951 5.5275418
22R:R:L952 4.8575419
23R:R:Y975 6.7425419
24R:R:P978 4.298509
25R:R:W1000 6.2125838
26R:R:F1007 3.3575408
27R:R:F1011 7.53439
28R:R:F1025 4.5625416
29R:R:L1026 4.015409
30R:R:M1033 5.6975459
31R:R:I1050 3.6456
32R:R:L1060 4.935449
33R:R:L1061 3.8675408
34R:R:L1064 5.055406
35R:R:W1068 10.506529
36R:R:Y1074 5.948527
37R:R:F1086 7.51333629
38R:R:F1089 5.0925407
39R:R:N1090 8.355429
40R:R:Q1093 6.05449
41R:R:F1096 4.206548
42R:R:I1097 5.4375448
43R:R:F1100 5.9725447
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I918 R:R:N919 13.15518.5NoNo086
2R:R:D865 R:R:I918 16.68592.8YesNo058
3R:R:D865 R:R:Y1074 15.8173.45YesYes257
4R:R:T1087 R:R:T868 16.64193.14NoNo088
5R:R:F914 R:R:Y1074 14.8823.09NoYes287
6R:R:F914 R:R:W1068 15.899510.02NoYes289
7R:R:E911 R:R:W1068 61.88757.63YesYes299
8R:R:F1086 R:R:Y1074 29.51664.13YesYes297
9R:R:F1086 R:R:W1068 24.90247.02YesYes299
10R:R:F1086 R:R:N1090 22.867519.33YesYes299
11R:R:E911 R:R:N1090 28.46625.26YesYes299
12R:R:E911 R:R:L876 98.10262.65YesNo099
13R:R:F908 R:R:L876 98.50413.65NoNo089
14R:R:F908 R:R:I883 99.2745.02NoNo087
15R:R:I883 R:R:L879 1002.85NoYes079
16R:R:C904 R:R:L879 61.2883.17NoYes089
17R:R:C904 R:R:F886 60.84252.79NoYes089
18R:R:C1102 R:R:F886 16.59792.79NoYes099
19R:R:C1102 R:R:C882 15.5317.28NoNo096
20R:R:C882 R:R:F1098 13.43012.79NoNo066
21R:R:I1097 R:R:L879 23.28555.71YesYes089
22R:R:L879 R:R:L907 45.9222.77YesNo099
23R:R:F886 R:R:N897 22.98310.87YesYes098
24R:R:L892 R:R:N897 19.11132.75YesYes088
25R:R:F889 R:R:L892 14.29916.09YesYes088
26R:R:F886 R:R:H900 45.50953.39YesYes099
27R:R:H900 R:R:R896 15.250510.16YesYes199
28R:R:M955 R:R:R896 11.07634.96NoYes089
29R:R:E948 R:R:H900 33.080316YesYes199
30R:R:E948 R:R:I899 37.55162.73YesYes199
31R:R:A941 R:R:L907 42.63873.15NoNo079
32R:R:A941 R:R:S906 41.89083.42NoNo077
33R:R:F937 R:R:S906 20.60176.61YesNo077
34R:R:F936 R:R:F937 11.983712.86YesYes077
35R:R:F936 R:R:Y975 13.70513.09YesYes079
36R:R:I899 R:R:W944 15.16257.05YesYes199
37R:R:I899 R:R:L947 22.3562.85YesYes198
38R:R:A940 R:R:S906 20.84363.42NoNo077
39R:R:F938 R:R:W1068 28.592625.05NoYes089
40R:R:F937 R:R:L933 16.82892.44YesNo075
41R:R:L913 R:R:L933 14.23862.77NoNo055
42R:R:F930 R:R:L913 12.86372.44YesNo055
43R:R:F938 R:R:L934 26.33236.09NoNo088
44R:R:L934 R:R:W1000 25.36996.83NoYes088
45R:R:A940 R:R:P978 20.34873.74NoYes079
46R:R:M977 R:R:P978 12.04423.35NoYes049
47R:R:L1061 R:R:M945 11.12032.83YesYes088
48R:R:F946 R:R:L947 21.98763.65YesYes198
49R:R:P978 R:R:T943 17.02143.5YesNo095
50R:R:F946 R:R:T943 16.73543.89YesNo095
51R:R:F1025 R:R:F946 14.09564.29YesYes169
52R:R:F1025 R:R:Y953 12.12675.16YesNo068
53R:R:I1050 R:R:M955 10.82332.92YesNo068
54R:R:L1001 R:R:W1000 10.350310.25NoYes388
55R:R:F1070 R:R:F1086 17.81883.22NoYes089
56R:R:F1070 R:R:M1082 15.02511.2NoNo087
57R:R:T868 R:R:Y1074 19.441213.73NoYes287
58R:R:W944 R:R:Y975 11.681210.61YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8JMT
Class B2
SubFamily Adhesion
Type Adhesion
SubType ADGRL3
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.3
Date 2023-09-06
D.O.I. 10.1038/s41589-023-01389-0
Net Summary
Imin 2.65
Number of Linked Nodes 211
Number of Links 257
Number of Hubs 43
Number of Links mediated by Hubs 153
Number of Communities 6
Number of Nodes involved in Communities 48
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 35441
Length Of Smallest Path 3
Average Path Length 12.8172
Length of Longest Path 26
Minimum Path Strength 1.5
Average Path Strength 5.34773
Maximum Path Strength 24.41
Minimum Path Correlation 0.7
Average Path Correlation 0.909266
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 41.0702
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.388
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9HAR2
Sequence
>8JMT_Chain_R
DLLLDVITW VGILLSLVC LLICIFTFC FFRGLQSDR NTIHKNLCI 
SLFVAELLF LIGINRTDQ PIACAVFAA LLHFFFLAA FTWMFLEGV 
QLYIMLVES RRKYFYLVG YGMPALIVA VSAAVVCWL RLDTYFIWS 
FIGPATLII MLNVIFLGI ALYKMFHHD NIKSWVIGA IALLCLLGL 
TWAFGLMYI NESTVIMAY LFTIFNSLQ GMFIFIFHC VLQKKVRKE 
YGKCLRTHA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7SF7B2AdhesionAdhesionADGRL3Homo sapiens--chim(NtGi2-G13)/&β;1/&γ;22.92022-04-2710.1038/s41586-022-04575-7
7WY5B2AdhesionAdhesionADGRL3Mus musculus--chim(NtGi1-Gs-CtGq)/&β;1/&γ;22.832022-10-2610.1016/j.molcel.2022.10.009
7WY8B2AdhesionAdhesionADGRL3Mus musculus--chim(NtGi1-Gs)/&β;1/&γ;22.832022-10-2610.1016/j.molcel.2022.10.009
7WYBB2AdhesionAdhesionADGRL3Mus musculus--Gi1/&β;1/&γ;22.972022-10-2610.1016/j.molcel.2022.10.009
7X10B2AdhesionAdhesionADGRL3Mus musculus--chim(NtGi1-G12)/&β;1/&γ;22.932022-10-2610.1016/j.molcel.2022.10.009
8JMTB2AdhesionAdhesionADGRL3Homo sapiens---3.32023-09-0610.1038/s41589-023-01389-0




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8JMT.zip



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