Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.889291410
2R:R:F25 9.89425
3R:R:F27 8.72425
4R:R:F28 5.18428
5R:R:L47 4.632506
6R:R:L55 3.61405
7R:R:N58 7.2825449
8R:R:L81 5.818539
9R:R:F82 5.874549
10R:R:I92 5.88457
11R:R:R99 17.87424
12R:R:E102 4.135404
13R:R:W104 13.49629
14R:R:L114 7.57426
15R:R:F115 6.326525
16R:R:V124 9.115407
17R:R:M137 4.418508
18R:R:I162 1.8325407
19R:R:W163 9.038509
20R:R:L173 5.53415
21R:R:F177 7.976525
22R:R:C194 6.5775429
23R:R:L196 4.8675405
24R:R:W198 10.6533617
25R:R:E204 7.548515
26R:R:W207 8.95833616
27R:R:D208 7.7575415
28R:R:F211 6.348515
29R:R:N215 8.6225416
30R:R:Y227 6.58333609
31R:R:R238 6.6475464
32R:R:Q252 6.068502
33R:R:R261 4.51578
34R:R:F273 5.69519
35R:R:W277 8.20571719
36R:R:I280 5.5525416
37R:R:F304 12.042524
38R:R:F311 5.715407
39R:R:Y321 5.7439
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R22 27.23643.69YesNo005
2R:R:R22 R:R:R24 25.856315.99NoNo055
3R:R:R24 R:R:T195 21.959914.23NoNo054
4L:L:?1 R:R:L196 63.28375.26YesYes005
5R:R:F27 R:R:L196 31.18324.87YesYes055
6R:R:F25 R:R:F27 18.425519.29YesYes255
7L:L:?1 R:R:I287 13.771815.18YesNo005
8R:R:F303 R:R:I287 12.71993.77NoNo045
9R:R:F25 R:R:F303 11.878310.72YesNo254
10R:R:F25 R:R:I298 19.21653.77YesNo053
11R:R:F115 R:R:F27 22.07365.36YesYes255
12R:R:F115 R:R:F28 32.02474.29YesYes258
13L:L:?1 R:R:M118 58.93297.52YesNo007
14R:R:F311 R:R:M118 58.22186.22YesNo077
15R:R:F311 R:R:V307 20.50413.93YesNo075
16R:R:F28 R:R:V307 19.31337.87YesNo085
17R:R:F28 R:R:R99 11.17565.34YesYes284
18R:R:F177 R:R:L196 32.71063.65YesYes055
19R:R:F115 R:R:F177 19.94456.43YesYes255
20R:R:F28 R:R:F304 25.86473.22YesYes284
21R:R:I193 R:R:T195 14.84894.56NoNo044
22R:R:I193 R:R:S29 11.94563.1NoNo049
23R:R:E102 R:R:S29 10.48145.75YesNo049
24R:R:F311 R:R:I92 75.48186.28YesYes077
25R:R:I92 R:R:L47 26.56327.14YesYes076
26R:R:F304 R:R:L47 17.11697.31YesYes046
27R:R:F304 R:R:W305 20.00347.02YesNo044
28R:R:V42 R:R:W305 16.01871.23NoNo054
29R:R:V38 R:R:V42 12.02561.6NoNo035
30L:L:?1 R:R:W277 1005.19YesYes109
31R:R:N313 R:R:W277 19.519513.56NoYes099
32R:R:M276 R:R:N313 18.644314.02NoNo089
33R:R:F309 R:R:M276 11.71422.49NoNo078
34R:R:F51 R:R:I92 62.01725.02NoYes567
35R:R:F51 R:R:L55 60.45617.31NoYes065
36R:R:L55 R:R:L86 53.58922.77YesNo057
37R:R:L86 R:R:N58 51.85146.87NoYes079
38R:R:D85 R:R:N58 13.603512.12NoYes499
39R:R:D85 R:R:S314 12.189710.31NoNo099
40R:R:S314 R:R:S54 10.17844.89NoNo098
41R:R:F82 R:R:N58 35.75283.62YesYes499
42R:R:F82 R:R:V78 19.53213.93YesNo098
43R:R:C76 R:R:V78 17.6053.42NoNo058
44R:R:C76 R:R:L79 11.77311.59NoNo055
45R:R:F82 R:R:N322 13.72554.83YesNo097
46R:R:L325 R:R:N322 11.77311.37NoNo087
47L:L:?1 R:R:F211 28.73433.7YesYes105
48R:R:F211 R:R:N215 18.985113.29YesYes156
49R:R:L127 R:R:N215 14.71854.12NoYes066
50R:R:I162 R:R:L127 16.67092.85YesNo076
51R:R:A131 R:R:I162 12.59361.62NoYes077
52R:R:A131 R:R:L77 11.21771.58NoNo077
53R:R:T125 R:R:W277 12.46746.06NoYes099
54R:R:L81 R:R:T125 11.12094.42YesNo099
55R:R:F311 R:R:F88 30.436.43YesNo077
56R:R:T310 R:R:W277 28.61233.64NoYes089
57R:R:F88 R:R:T310 28.51133.89NoNo078
58L:L:?1 R:R:I280 10.83488.67YesYes106
59R:R:F115 R:R:W104 14.62177.02YesYes259
60R:R:C194 R:R:F177 10.65816.98YesYes295
61R:R:L106 R:R:W104 10.83489.11NoYes069
62L:L:?1 R:R:L173 13.60776.31YesYes105
63R:R:P172 R:R:W198 12.16444.05NoYes187
64R:R:L171 R:R:P172 17.87434.93NoNo058
65R:R:C174 R:R:L171 13.14064.76NoNo045
66R:R:L196 R:R:W198 15.67795.69YesYes057
67L:L:?1 R:R:E204 13.03548.05YesYes105
68R:R:P172 R:R:W207 10.519220.27NoYes186
69L:L:?1 R:R:D208 10.00177.21YesYes105
70R:R:F176 R:R:W198 15.61927.06NoYes057
71R:R:C174 R:R:Y116 13.52778.06NoNo045
72R:R:F273 R:R:W277 90.1546.01YesYes199
73R:R:F273 R:R:I223 91.02087.54YesNo098
74R:R:I223 R:R:S133 86.60274.64NoNo088
75R:R:S133 R:R:Y227 85.226811.45NoYes089
76R:R:S226 R:R:Y227 17.53776.36NoYes059
77R:R:M137 R:R:S226 15.59796.13YesNo085
78R:R:L269 R:R:Y227 23.50847.03NoYes089
79R:R:L266 R:R:Y227 50.95512.34NoYes089
80R:R:L231 R:R:L266 43.978812.46NoNo068
81R:R:K235 R:R:L231 36.59852.82NoNo056
82R:R:D259 R:R:K235 34.84814.15NoNo075
83R:R:D259 R:R:R238 31.145315.48NoYes674
84R:R:Q252 R:R:R238 27.42155.84YesYes024
85R:R:L269 R:R:L320 21.58555.54NoNo088
86R:R:L268 R:R:L320 17.71442.77NoNo068
87R:R:L268 R:R:M323 15.76622.83NoNo065
88R:R:M323 R:R:R327 13.80964.96NoNo058
89R:R:I280 R:R:T283 11.23034.56YesNo065
90R:R:I298 R:R:Q290 16.84349.61NoNo034
91R:R:L296 R:R:Q290 14.46185.32NoNo054
92R:R:K293 R:R:L296 12.071914.1NoNo015
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:R22 3.69 1 Yes No 0 5 0 1
L:L:?1 R:R:M118 7.52 1 Yes No 0 7 0 1
L:L:?1 R:R:T119 10.07 1 Yes No 0 5 0 1
L:L:?1 R:R:G122 5.2 1 Yes No 0 7 0 1
L:L:?1 R:R:L173 6.31 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L196 5.26 1 Yes Yes 0 5 0 1
L:L:?1 R:R:E204 8.05 1 Yes Yes 0 5 0 1
L:L:?1 R:R:D208 7.21 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F211 3.7 1 Yes Yes 0 5 0 1
L:L:?1 R:R:W277 5.19 1 Yes Yes 0 9 0 1
L:L:?1 R:R:I280 8.67 1 Yes Yes 0 6 0 1
L:L:?1 R:R:I284 10.84 1 Yes No 0 5 0 1
L:L:?1 R:R:I287 15.18 1 Yes No 0 5 0 1
L:L:?1 R:R:N291 13.56 1 Yes No 0 2 0 1
R:R:R22 R:R:R24 15.99 0 No No 5 5 1 2
R:R:F27 R:R:L196 4.87 2 Yes Yes 5 5 2 1
R:R:F27 R:R:F303 5.36 2 Yes No 5 4 2 2
R:R:F311 R:R:M118 6.22 0 Yes No 7 7 2 1
R:R:A170 R:R:T119 3.36 0 No No 7 5 2 1
R:R:L173 R:R:T119 4.42 1 Yes No 5 5 1 1
R:R:F211 R:R:S123 3.96 1 Yes No 5 6 1 2
R:R:N215 R:R:S123 8.94 1 Yes No 6 6 2 2
R:R:T125 R:R:W277 6.06 0 No Yes 9 9 2 1
R:R:F273 R:R:I126 5.02 1 Yes No 9 8 2 2
R:R:I126 R:R:W277 19.97 1 No Yes 8 9 2 1
R:R:L173 R:R:W198 3.42 1 Yes Yes 5 7 1 2
R:R:L173 R:R:W207 7.97 1 Yes Yes 5 6 1 2
R:R:F177 R:R:L196 3.65 2 Yes Yes 5 5 2 1
R:R:L196 R:R:W198 5.69 0 Yes Yes 5 7 1 2
R:R:E204 R:R:W198 15.27 1 Yes Yes 5 7 1 2
R:R:W198 R:R:W207 8.43 1 Yes Yes 7 6 2 2
R:R:I201 R:R:N291 8.5 0 No No 4 2 2 1
R:R:D208 R:R:E204 6.5 1 Yes Yes 5 5 1 1
R:R:E204 R:R:L288 3.98 1 Yes No 5 4 1 2
R:R:E204 R:R:N291 3.94 1 Yes No 5 2 1 1
R:R:D208 R:R:W207 7.82 1 Yes Yes 5 6 1 2
R:R:F211 R:R:W207 8.02 1 Yes Yes 5 6 1 2
R:R:D208 R:R:L288 9.5 1 Yes No 5 4 1 2
R:R:F211 R:R:N215 13.29 1 Yes Yes 5 6 1 2
R:R:F273 R:R:W277 6.01 1 Yes Yes 9 9 2 1
R:R:T310 R:R:W277 3.64 0 No Yes 8 9 2 1
R:R:N313 R:R:W277 13.56 0 No Yes 9 9 2 1
R:R:I280 R:R:T283 4.56 1 Yes No 6 5 1 2
R:R:I280 R:R:I284 4.42 1 Yes No 6 5 1 1
R:R:I280 R:R:T310 4.56 1 Yes No 6 8 1 2
R:R:F303 R:R:I287 3.77 2 No No 4 5 2 1
R:R:F216 R:R:W277 3.01 0 No Yes 8 9 2 1
R:R:A169 R:R:F211 2.77 0 No Yes 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8T3Q_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 274
Number of Links 312
Number of Hubs 39
Number of Links mediated by Hubs 152
Number of Communities 7
Number of Nodes involved in Communities 50
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 93
Number Of Links MetaPath 92
Number of Shortest Paths 66295
Length Of Smallest Path 3
Average Path Length 12.5816
Length of Longest Path 32
Minimum Path Strength 1.23
Average Path Strength 6.57805
Maximum Path Strength 22.055
Minimum Path Correlation 0.7
Average Path Correlation 0.93993
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 57.5852
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.0658
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHXA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHXA
NameDoconexent
SynonymsDHA
Identifier
FormulaC22 H32 O2
Molecular Weight328.488
SMILES
PubChem445580
Formal Charge0
Total Atoms56
Total Chiral Atoms0
Total Bonds55
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ5NUL3
Sequence
>8T3Q_nogp_Chain_R
RTRFPFFSD VKGDHRLVL AAVETTVLV LIFAVSLLG NVCALVLVA 
RRRRRGATA CLVLNLFCA DLLFISAIP LVLAVRWTE AWLLGPVAC 
HLLFYVMTL SGSVTILTL AAVSLERMV CIVHLQRGP GRRARAVLL 
ALIWGYSAV AALPLCVFF RVVPQRISI CTLIWPTIP GEISWDVSF 
VTLNFLVPG LVIVISYSK ILQITKASR KRLTVSLAY SESHQIRVS 
QQDFRLFRT LFLLMVSFF IMWSPIIIT ILLILIQNF KQDLVIWPS 
LFFWVVAFT FANSALNPI LYNMTLCRN E


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8T3QALipidFree Fatty AcidFFA4Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-chim(NtGi2L-Gs-CtGq)/β1/γ23.142024-01-2410.1126/sciadv.adj2384
8T3Q (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-3.142024-01-2410.1126/sciadv.adj2384
8T3OALipidFree Fatty AcidFFA4Homo sapiensTUG-8912Y5chim(NtGi2L-Gs-CtGq)/β1/γ23.062024-01-1710.1126/sciadv.adj2384
8T3O (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-8912Y53.062024-01-1710.1126/sciadv.adj2384
8H4LALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs-CtGq)/β1/γ23.072023-06-2110.1038/s41422-023-00835-x
8H4L (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.072023-06-2110.1038/s41422-023-00835-x
8H4KALipidFree Fatty AcidFFA4Homo sapiensGW9508-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-06-2110.1038/s41422-023-00835-x
8H4K (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensGW9508-3.12023-06-2110.1038/s41422-023-00835-x
8H4IALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs)/β1/γ23.062023-06-2110.1038/s41422-023-00835-x
8H4I (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.062023-06-2110.1038/s41422-023-00835-x
8IYSALipidFree Fatty AcidFFA4Homo sapiensTUG-891GDPchim(NtGi1L-Gq)/β1/γ22.952023-06-2110.1038/s41422-023-00835-x
8IYS (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891GDP2.952023-06-2110.1038/s41422-023-00835-x
8ID9ALipidFree Fatty AcidFFA4Homo sapiensEicosapentaenoic acid-Gi1/β1/γ232023-03-1510.1126/science.add6220
8ID9 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensEicosapentaenoic acid-32023-03-1510.1126/science.add6220
8ID8ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-Gi1/β1/γ232023-03-1510.1126/science.add6220
8ID8 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-32023-03-1510.1126/science.add6220
8ID6ALipidFree Fatty AcidFFA4Homo sapiensOleic acid-Gi1/β1/γ22.82023-03-1510.1126/science.add6220
8ID6 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensOleic acid-2.82023-03-1510.1126/science.add6220
8ID4ALipidFree Fatty AcidFFA4Homo sapiensLinoleic acid-Gi1/β1/γ23.12023-03-1510.1126/science.add6220
8ID4 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensLinoleic acid-3.12023-03-1510.1126/science.add6220
8ID3ALipidFree Fatty AcidFFA4Homo sapiens9-Hydroxystearic acid-Gi1/β1/γ23.12023-03-1510.1126/science.add6220
8ID3 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiens9-Hydroxystearic acid-3.12023-03-1510.1126/science.add6220
8G59ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-chim(Gi1-CtGq)/β1/γ22.642023-03-0810.1126/science.add6220
8G59 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-2.642023-03-0810.1126/science.add6220




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8T3Q_nogp.zip



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