Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 5.861010
2R:R:F25 6.365605
3R:R:F27 7.115415
4R:R:F28 7.078518
5R:R:K32 4.7475453
6R:R:L47 4.7175406
7R:R:N58 10.4275439
8R:R:N80 6.49579
9R:R:F82 5.185639
10R:R:F88 6.04407
11R:R:I89 6.0775466
12R:R:I92 6.48567
13R:R:W104 8.98549
14R:R:F115 6.27415
15R:R:M118 4.5025407
16R:R:T119 4.1025415
17R:R:V124 7.765477
18R:R:R136 5.265429
19R:R:F177 7.7075415
20R:R:R183 5.1175403
21R:R:W198 15.4875407
22R:R:W207 9.244506
23R:R:D208 7.4275415
24R:R:F211 5.648515
25R:R:N215 8.0075406
26R:R:F216 6.4575408
27R:R:Y227 5.20571729
28R:R:K229 5.625405
29R:R:Y247 6.6425494
30R:R:H251 4.9625492
31R:R:F273 4.844529
32R:R:M276 5.084508
33R:R:W277 10.205429
34R:R:F303 4.5775414
35R:R:F311 7.4675407
36R:R:Y321 4.87529
37R:R:N322 4.075437
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F27 28.67944.89YesYes105
2R:R:F25 R:R:F27 21.53627.5YesYes055
3R:R:F25 R:R:P26 30.95234.33YesNo055
4R:R:P26 R:R:R183 17.56384.32NoYes053
5L:L:?1 R:R:I287 20.37444.59YesNo005
6R:R:F25 R:R:I287 19.46125.02YesNo055
7R:R:R183 R:R:R24 12.95722.13YesNo035
8R:R:P26 R:R:S29 11.80565.34NoNo059
9L:L:?1 R:R:F88 33.64114.89YesYes007
10R:R:F311 R:R:F88 29.93769.65YesYes077
11L:L:?1 R:R:M118 31.33786.82YesYes007
12R:R:F311 R:R:M118 29.84633.73YesYes077
13R:R:F311 R:R:I92 63.507712.56YesYes077
14R:R:I92 R:R:L47 43.98564.28YesYes076
15R:R:F304 R:R:L47 36.01546.09NoYes046
16R:R:F304 R:R:R99 24.230127.79NoNo044
17R:R:K32 R:R:R99 20.93757.43YesNo534
18R:R:K32 R:R:L39 16.15852.82YesNo034
19R:R:D34 R:R:L39 14.40316.79NoNo034
20R:R:D34 R:R:H35 12.63763.78NoNo033
21R:R:H35 R:R:V38 10.8621.38NoNo033
22R:R:E43 R:R:F304 10.50689.33NoNo054
23R:R:I89 R:R:I92 17.75155.89YesYes667
24L:L:?1 R:R:I280 96.64658.03YesNo106
25R:R:I280 R:R:T310 1004.56NoNo068
26R:R:T310 R:R:W277 99.40643.64NoYes089
27R:R:F273 R:R:W277 88.0985.01YesYes299
28R:R:F273 R:R:L129 82.11663.65YesNo298
29R:R:L129 R:R:Y321 62.11257.03NoYes289
30R:R:R136 R:R:Y321 27.30465.14YesYes299
31R:R:E135 R:R:R136 27.85253.49NoYes089
32R:R:C76 R:R:E135 26.47766.08NoNo058
33R:R:C76 R:R:V78 25.09263.42NoNo058
34R:R:F82 R:R:V78 23.69743.93YesNo098
35R:R:F82 R:R:N322 13.64724.83YesYes397
36R:R:L129 R:R:L81 19.15175.54NoNo289
37R:R:L81 R:R:T128 21.98774.42NoNo098
38R:R:N80 R:R:T128 20.59268.77YesNo098
39R:R:N80 R:R:V124 11.96794.43YesYes797
40R:R:C111 R:R:W104 11.20695.22NoYes499
41L:L:?1 R:R:F211 15.74764.89YesYes105
42R:R:F211 R:R:N215 10.40039.67YesYes056
43R:R:Y227 R:R:Y321 33.29613.97YesYes299
44R:R:S133 R:R:Y227 21.84065.09NoYes289
45R:R:S133 R:R:S226 20.52156.52NoNo085
46R:R:M137 R:R:S226 14.83949.2NoNo085
47R:R:L266 R:R:Y227 10.54234.69NoYes089
48L:L:?1 R:R:E204 15.77294.26YesNo005
49R:R:E204 R:R:W198 13.124731.62NoYes057
50R:R:F176 R:R:W198 13.87552NoYes057
51R:R:F176 R:R:P199 10.8627.22NoNo056
52R:R:N313 R:R:W277 16.346218.08NoYes099
53R:R:M276 R:R:N313 13.464611.22YesNo089
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F27 4.89 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F88 4.89 1 Yes Yes 0 7 0 1
L:L:?1 R:R:M118 6.82 1 Yes Yes 0 7 0 1
L:L:?1 R:R:T119 4.74 1 Yes Yes 0 5 0 1
L:L:?1 R:R:E204 4.26 1 Yes No 0 5 0 1
L:L:?1 R:R:D208 10.9 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F211 4.89 1 Yes Yes 0 5 0 1
L:L:?1 R:R:I280 8.03 1 Yes No 0 6 0 1
L:L:?1 R:R:I284 4.59 1 Yes No 0 5 0 1
L:L:?1 R:R:I287 4.59 1 Yes No 0 5 0 1
R:R:F25 R:R:F27 7.5 0 Yes Yes 5 5 2 1
R:R:F25 R:R:I287 5.02 0 Yes No 5 5 2 1
R:R:F115 R:R:F27 8.57 1 Yes Yes 5 5 2 1
R:R:F177 R:R:F27 7.5 1 Yes Yes 5 5 2 1
R:R:F88 R:R:S121 6.61 0 Yes No 7 8 1 2
R:R:F311 R:R:F88 9.65 0 Yes Yes 7 7 2 1
R:R:F115 R:R:L114 3.65 1 Yes No 5 6 2 2
R:R:L114 R:R:M118 4.24 0 No Yes 6 7 2 1
R:R:F115 R:R:F177 7.5 1 Yes Yes 5 5 2 2
R:R:F311 R:R:M118 3.73 0 Yes Yes 7 7 2 1
R:R:L173 R:R:T119 4.42 0 No Yes 5 5 2 1
R:R:F211 R:R:T119 3.89 1 Yes Yes 5 5 1 1
R:R:F177 R:R:L173 3.65 1 Yes No 5 5 2 2
R:R:L173 R:R:W207 7.97 0 No Yes 5 6 2 2
R:R:E204 R:R:W198 31.62 0 No Yes 5 7 1 2
R:R:W198 R:R:W207 11.25 0 Yes Yes 7 6 2 2
R:R:E204 R:R:N291 9.2 0 No No 5 2 1 2
R:R:D208 R:R:W207 7.82 1 Yes Yes 5 6 1 2
R:R:F211 R:R:W207 7.02 1 Yes Yes 5 6 1 2
R:R:D208 R:R:I284 4.2 1 Yes No 5 5 1 1
R:R:D208 R:R:L288 6.79 1 Yes No 5 4 1 2
R:R:F211 R:R:N215 9.67 1 Yes Yes 5 6 1 2
R:R:I280 R:R:I284 4.42 1 No No 6 5 1 1
R:R:I280 R:R:T310 4.56 1 No No 6 8 1 2
R:R:A170 R:R:T119 3.36 0 No Yes 7 5 2 1
R:R:A91 R:R:M118 3.22 0 No Yes 6 7 2 1
R:R:F88 R:R:G122 3.01 0 Yes No 7 7 1 2
R:R:A169 R:R:F211 2.77 0 No Yes 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8ID4_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.49
Number of Linked Nodes 256
Number of Links 276
Number of Hubs 37
Number of Links mediated by Hubs 138
Number of Communities 9
Number of Nodes involved in Communities 49
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 54
Number Of Links MetaPath 53
Number of Shortest Paths 35393
Length Of Smallest Path 3
Average Path Length 12.9573
Length of Longest Path 32
Minimum Path Strength 1.245
Average Path Strength 6.15225
Maximum Path Strength 24.35
Minimum Path Correlation 0.7
Average Path Correlation 0.943215
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 63.014
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.762
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeEIC
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeEIC
NameLinoleic acid
SynonymsSodium linolate
Identifier
FormulaC18 H32 O2
Molecular Weight280.445
SMILES
PubChem5280450
Formal Charge0
Total Atoms52
Total Chiral Atoms0
Total Bonds51
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ5NUL3
Sequence
>8ID4_nogp_Chain_R
TRFPFFSDV KGDHRLVLA AVETTVLVL IFAVSLLGN VCALVLVAR 
RRRRGACLV LNLFCADLL FISAIPLVL AVRWTEAWG PVACHLLFY 
VMTLSGSVT ILTLAAVSL ERMVCIVHL GRRARAVLL ALIWGYSAV 
AALPLCVFF RVVPQRISI CTLIWPTIP GEISWDVSF VTLNFLVPG 
LVIVISYSK ILQITKASR KRLTVSLAY SESHQIRVS QQDFRLFRT 
LFLLMVSFF IMWSPIIIT ILLILIQNF KQDLVIWPS LFFWVVAFT 
FANSALNPI LYNMTL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8G59ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-chim(Gi1-CtGq)/β1/γ22.642023-03-08doi.org/10.1126/science.add6220
8G59 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-2.642023-03-08doi.org/10.1126/science.add6220
8ID3ALipidFree Fatty AcidFFA4Homo sapiens9-Hydroxystearic acid-Gi1/β1/γ23.12023-03-15doi.org/10.1126/science.add6220
8ID3 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiens9-Hydroxystearic acid-3.12023-03-15doi.org/10.1126/science.add6220
8ID4ALipidFree Fatty AcidFFA4Homo sapiensLinoleic acid-Gi1/β1/γ23.12023-03-15doi.org/10.1126/science.add6220
8ID4 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensLinoleic acid-3.12023-03-15doi.org/10.1126/science.add6220
8ID6ALipidFree Fatty AcidFFA4Homo sapiensOleic acid-Gi1/β1/γ22.82023-03-15doi.org/10.1126/science.add6220
8ID6 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensOleic acid-2.82023-03-15doi.org/10.1126/science.add6220
8ID8ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-Gi1/β1/γ232023-03-15doi.org/10.1126/science.add6220
8ID8 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-32023-03-15doi.org/10.1126/science.add6220
8ID9ALipidFree Fatty AcidFFA4Homo sapiensIcosapent-Gi1/β1/γ232023-03-15doi.org/10.1126/science.add6220
8ID9 (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensIcosapent-32023-03-15doi.org/10.1126/science.add6220
8H4IALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs)/β1/γ23.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4I (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4KALipidFree Fatty AcidFFA4Homo sapiensGW9508-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4K (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensGW9508-3.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4LALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs-CtGq)/β1/γ23.072023-06-21doi.org/10.1038/s41422-023-00835-x
8H4L (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.072023-06-21doi.org/10.1038/s41422-023-00835-x
8IYSALipidFree Fatty AcidFFA4Homo sapiensTUG-891GDPchim(NtGi1L-Gq)/β1/γ22.952023-06-21doi.org/10.1038/s41422-023-00835-x
8IYS (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891GDP2.952023-06-21doi.org/10.1038/s41422-023-00835-x
8T3OALipidFree Fatty AcidFFA4Homo sapiensTUG-891-chim(NtGi2L-Gs-CtGq)/β1/γ23.062024-01-17doi.org/10.1126/sciadv.adj2384
8T3O (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensTUG-891-3.062024-01-17doi.org/10.1126/sciadv.adj2384
8T3QALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi2L-Gs-CtGq)/β1/γ23.142024-01-24doi.org/10.1126/sciadv.adj2384
8T3Q (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.142024-01-24doi.org/10.1126/sciadv.adj2384




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ID4_nogp.zip



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