Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.753081320
2R:R:V69 4.33407
3R:R:F70 6.24417
4R:R:N77 6.4175419
5R:R:M81 2.9925467
6R:R:Y87 10.454505
7R:R:T88 3.4875406
8R:R:I96 3.6725445
9R:R:Y97 4.2375447
10R:R:F99 5.56465
11R:R:L101 4.375409
12R:R:V108 4.2925407
13R:R:T109 3.3925416
14R:R:M112 8.0825417
15R:R:W124 6.826578
16R:R:F126 4.144507
17R:R:Y139 4.7875405
18R:R:F143 4.638506
19R:R:Y157 7.09407
20R:R:N179 7.875447
21R:R:W183 8.30333649
22R:R:I194 2.2575404
23R:R:T199 3.54474
24R:R:Q213 2.2325434
25R:R:C245 3.3775407
26R:R:Y246 6.54667658
27R:R:L253 2.83254118
28R:R:L269 3.85254116
29R:R:W287 4.564528
30R:R:H291 5.31428
31R:R:E297 5.858525
32R:R:Y312 6.2225404
33R:R:Y313 7.9484
34R:R:Y320 9.4975406
35R:R:N322 5.2725409
36R:R:N326 6.305419
37R:R:P327 6.1575419
38R:R:Y330 4.338509
39R:R:F337 7.582598
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y312 34.26863.84YesYes004
2R:R:Y312 R:R:Y313 30.41056.95YesYes044
3R:R:I62 R:R:Y313 19.6223.63NoYes854
4R:R:I61 R:R:I62 17.12782.94NoNo055
5R:R:F314 R:R:I61 11.4642.51NoNo055
6L:L:?1 R:R:Y320 38.38663.84YesYes006
7R:R:M112 R:R:Y320 34.892219.16YesYes076
8R:R:M112 R:R:V69 19.14136.09YesYes077
9R:R:P113 R:R:Y66 10.8472.78NoNo086
10R:R:F70 R:R:M112 10.39883.73YesYes177
11R:R:F70 R:R:T109 14.08812.59YesYes176
12R:R:G73 R:R:T109 10.11953.64NoYes086
13L:L:?1 R:R:W287 56.67712.49YesYes208
14R:R:N322 R:R:W287 64.62075.65YesYes098
15R:R:N322 R:R:N326 63.28922.72YesYes099
16R:R:D105 R:R:N326 15.47812.12NoYes199
17R:R:D105 R:R:N77 13.95826.73NoYes199
18R:R:N326 R:R:P327 20.52484.89YesYes199
19R:R:N77 R:R:P327 14.44539.77YesYes199
20R:R:N77 R:R:T109 23.36972.92YesYes196
21L:L:?1 R:R:Y139 84.56747.69YesYes005
22R:R:F143 R:R:Y139 56.28735.16YesYes065
23R:R:F143 R:R:S186 1002.64YesNo068
24R:R:S186 R:R:Y140 52.12392.54NoNo085
25R:R:W183 R:R:Y140 48.30487.72YesNo095
26R:R:N179 R:R:W183 49.62989.04YesYes479
27R:R:I96 R:R:N179 38.89322.83YesYes457
28R:R:I96 R:R:M90 39.56874.37YesNo057
29R:R:F99 R:R:M90 34.81426.22YesNo057
30L:L:?1 R:R:M142 34.09337.72YesNo207
31R:R:F143 R:R:M142 50.07796.22YesNo067
32R:R:S186 R:R:T144 47.3114.8NoNo087
33R:R:T144 R:R:W183 46.356216.98NoYes079
34R:R:L101 R:R:N326 78.62435.49YesYes099
35R:R:L101 R:R:Y330 61.85373.52YesYes099
36R:R:I98 R:R:Y330 40.04294.84NoYes089
37R:R:F337 R:R:I98 38.56852.51YesNo088
38R:R:F337 R:R:Y87 14.796111.35YesYes085
39R:R:I84 R:R:T88 10.84053.04NoYes076
40R:R:F337 R:R:N95 19.80382.42YesNo087
41R:R:F99 R:R:M81 19.73894.98YesYes657
42R:R:F82 R:R:M81 18.75811.24NoYes047
43R:R:F82 R:R:R86 12.51623.21NoNo045
44R:R:N95 R:R:T92 11.20425.85NoNo077
45R:R:L101 R:R:L149 10.54825.54YesNo098
46R:R:M152 R:R:Y97 17.47213.59NoYes087
47R:R:M152 R:R:Y330 10.56123.59NoYes089
48R:R:L101 R:R:T148 22.25252.95YesNo097
49L:L:?1 R:R:V108 18.09561.63YesYes007
50R:R:N141 R:R:V108 10.48975.91NoYes087
51R:R:I135 R:R:Y139 43.2193.63NoYes045
52R:R:C131 R:R:I135 41.45231.64NoNo094
53R:R:C131 R:R:C210 39.48437.28NoNo099
54R:R:C210 R:R:W124 22.759213.06NoYes798
55R:R:F126 R:R:W124 14.93254.01YesYes078
56R:R:C210 R:R:T199 14.72463.38NoYes794
57R:R:A193 R:R:Y139 33.51522.67NoYes055
58R:R:A193 R:R:G190 31.67061.95NoNo056
59R:R:G190 R:R:S136 29.63761.86NoNo065
60R:R:I194 R:R:S136 27.59163.1YesNo045
61R:R:I194 R:R:K132 21.37571.45YesNo046
62R:R:G198 R:R:K132 19.27776.97NoNo046
63R:R:F143 R:R:V189 11.34716.55YesNo065
64R:R:I182 R:R:W183 58.22942.35NoYes079
65R:R:F147 R:R:I182 22.71372.51NoNo067
66R:R:F147 R:R:T150 18.95952.59NoNo067
67R:R:P238 R:R:T150 15.19233.5NoNo097
68R:R:I182 R:R:M151 35.67815.83NoNo076
69R:R:I178 R:R:M151 32.4244.37NoNo066
70R:R:F283 R:R:W287 49.80518.02NoYes098
71R:R:F283 R:R:V239 48.19432.62NoNo096
72R:R:I243 R:R:V239 75.22081.54NoNo056
73R:R:I243 R:R:V280 73.0061.54NoNo058
74R:R:V280 R:R:Y246 70.77812.52NoYes088
75L:L:?1 R:R:H291 51.07175.62YesYes208
76R:R:F235 R:R:H291 38.90625.66NoYes088
77R:R:F235 R:R:V239 29.31936.55NoNo086
78R:R:S153 R:R:Y246 32.976115.26NoYes598
79R:R:C245 R:R:S153 31.50823.44YesNo079
80R:R:M249 R:R:Y246 35.39883.59NoYes588
81R:R:C245 R:R:Y157 23.32426.72YesYes077
82R:R:C161 R:R:Y157 11.32769.41NoYes077
83R:R:H162 R:R:Y157 14.27648.71NoYes067
84R:R:I178 R:R:K174 25.94182.91NoNo065
85R:R:F169 R:R:K174 16.2513.72NoNo045
86R:R:F169 R:R:I158 13.79585.02NoNo045
87R:R:H162 R:R:I158 12.1983.98NoNo065
88R:R:M249 R:R:V160 32.99567.61NoNo088
89R:R:L253 R:R:V160 30.47542.98YesNo088
90L:L:?1 R:R:S211 14.98445.74YesNo004
91R:R:L212 R:R:S211 12.62026.01NoNo044
92R:R:G198 R:R:Q213 14.99741.64NoYes344
93R:R:P215 R:R:Q213 10.7561.58NoYes354
94R:R:F231 R:R:H291 37.94496.79NoYes058
95R:R:F231 R:R:V236 11.97061.31NoNo054
96R:R:F231 R:R:L295 23.51918.53NoNo055
97R:R:L253 R:R:L269 12.73715.54YesYes1186
98R:R:L253 R:R:L259 10.43781.38YesNo1183
99R:R:L329 R:R:Y330 15.12734.69NoYes089
100L:L:?1 R:R:E297 12.65915.79YesYes205
101R:R:L295 R:R:L299 20.59635.54NoNo054
102R:R:T148 R:R:W183 21.99922.43NoYes079
103R:R:H291 R:R:W287 20.66123.17YesYes288
104R:R:M142 R:R:W287 16.60823.49NoYes278
105R:R:I96 R:R:Y97 10.25596.04YesYes457
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D138 17.06 2 Yes No 0 6 0 1
L:L:?1 R:R:Y139 7.69 2 Yes Yes 0 5 0 1
L:L:?1 R:R:M142 7.72 2 Yes No 0 7 0 1
L:L:?1 R:R:S211 5.74 2 Yes No 0 4 0 1
L:L:?1 R:R:W287 2.49 2 Yes Yes 0 8 0 1
L:L:?1 R:R:I290 3.12 2 Yes No 0 6 0 1
L:L:?1 R:R:H291 5.62 2 Yes Yes 0 8 0 1
L:L:?1 R:R:I294 7.8 2 Yes No 0 5 0 1
L:L:?1 R:R:E297 5.79 2 Yes Yes 0 5 0 1
L:L:?1 R:R:H304 15.45 2 Yes No 0 1 0 1
L:L:?1 R:R:Y312 3.84 2 Yes Yes 0 4 0 1
L:L:?1 R:R:Y320 3.84 2 Yes Yes 0 6 0 1
R:R:T111 R:R:V108 3.17 0 No Yes 7 7 2 1
R:R:N141 R:R:V108 5.91 0 No Yes 8 7 2 1
R:R:S323 R:R:V108 6.46 0 No Yes 8 7 2 1
R:R:M112 R:R:Y320 19.16 1 Yes Yes 7 6 2 1
R:R:Q115 R:R:Y312 5.64 0 No Yes 7 4 2 1
R:R:Q115 R:R:Y320 10.15 0 No Yes 7 6 2 1
R:R:I135 R:R:Y139 3.63 0 No Yes 4 5 2 1
R:R:F143 R:R:Y139 5.16 0 Yes Yes 6 5 2 1
R:R:A193 R:R:Y139 2.67 0 No Yes 5 5 2 1
R:R:F143 R:R:M142 6.22 0 Yes No 6 7 2 1
R:R:M142 R:R:W287 3.49 2 No Yes 7 8 1 1
R:R:L212 R:R:S211 6.01 0 No No 4 4 2 1
R:R:I294 R:R:K227 7.27 2 No No 5 4 1 2
R:R:F231 R:R:H291 6.79 0 No Yes 5 8 2 1
R:R:F235 R:R:H291 5.66 0 No Yes 8 8 2 1
R:R:F283 R:R:W287 8.02 0 No Yes 9 8 2 1
R:R:H291 R:R:W287 3.17 2 Yes Yes 8 8 1 1
R:R:N322 R:R:W287 5.65 0 Yes Yes 9 8 2 1
R:R:C315 R:R:I290 4.91 0 No No 7 6 2 1
R:R:E297 R:R:F293 11.66 2 Yes No 5 5 1 2
R:R:E297 R:R:I294 4.1 2 Yes No 5 5 1 1
R:R:E297 R:R:T302 2.82 2 Yes No 5 1 1 2
R:R:E297 R:R:H304 4.92 2 Yes No 5 1 1 1
R:R:A308 R:R:H304 4.39 0 No No 3 1 2 1
R:R:Y312 R:R:Y313 6.95 0 Yes Yes 4 4 1 2
R:R:I316 R:R:Y312 8.46 0 No Yes 5 4 2 1
R:R:I316 R:R:Y320 4.84 0 No Yes 5 6 2 1
L:L:?1 R:R:V108 1.63 2 Yes Yes 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8VVE_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.35
Number of Linked Nodes 266
Number of Links 295
Number of Hubs 39
Number of Links mediated by Hubs 145
Number of Communities 11
Number of Nodes involved in Communities 52
Number of Links involved in Communities 63
Path Summary
Number Of Nodes in MetaPath 106
Number Of Links MetaPath 105
Number of Shortest Paths 52227
Length Of Smallest Path 3
Average Path Length 12.3101
Length of Longest Path 26
Minimum Path Strength 1.37
Average Path Strength 4.94697
Maximum Path Strength 20.315
Minimum Path Correlation 0.7
Average Path Correlation 0.924665
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 50.4074
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.1683
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1A
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1A
Name6-AMINO HEXANOIC ACID
Synonyms
Identifier
FormulaC33 H40 N4 O6
Molecular Weight588.694
SMILES
PubChem5327090
Formal Charge0
Total Atoms83
Total Chiral Atoms4
Total Bonds86
Total Aromatic Bonds18

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41145
Sequence
>8VVE_nogp_Chain_R
AIPVIITAV YSVVFVVGL VGNSLVMFV IIRYTKMKT ATNIYIFNL 
ALADALVTT TMPFQSTVY LMNSWPFGD VLCKIVISI DYYNMFTSI 
FTLTMMSVD RYIAVCHPV KALDFRTPL KAKIINICI WLLSSSVGI 
SAIVLGGTK VREDVDVIE CSLQFPDDD YSWWDLFMK ICVFIFAFV 
IPVLIIIVC YTLMILRLK SVRLLSGSR EKDRNLRRI TRLVLVVVA 
VFVVCWTPI HIFILVEAL GSTSHSTAA LSSYYFCIA LGYTNSSLN 
PILYAFLDE NFKRCFR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6B73APeptideOpioidκHomo sapiensMP1104--3.12018-01-17doi.org/10.1016/j.cell.2017.12.011
8F7WAPeptideOpioidκHomo sapiensDynorphin-Gi1/β1/γ23.192022-12-14doi.org/10.1016/j.cell.2022.12.026
8F7W (No Gprot) APeptideOpioidκHomo sapiensDynorphin-3.192022-12-14doi.org/10.1016/j.cell.2022.12.026
4DJHAPeptideOpioidκHomo sapiensJDTic--2.92012-03-21doi.org/10.1038/nature10939
6VI4APeptideOpioidκHomo sapiensJDTic--3.32020-03-18doi.org/10.1038/s41467-020-14889-7
7YITAPeptideOpioidκHomo sapiensNalfurafine--3.32023-04-12doi.org/10.1038/s41467-023-37041-7
8FEGAPeptideOpioidκHomo sapiens(DNCP)-β-Naloxamine-Gi1/β1/γ22.542023-12-06doi.org/10.1038/s41467-023-43718-w
8FEG (No Gprot) APeptideOpioidκHomo sapiens(DNCP)-β-Naloxamine-2.542023-12-06doi.org/10.1038/s41467-023-43718-w
8DZPAPeptideOpioidκHomo sapiensmomSalB-Gi1/β1/γ22.712023-05-03doi.org/10.1038/s41586-023-06030-7
8DZP (No Gprot) APeptideOpioidκHomo sapiensmomSalB-2.712023-05-03doi.org/10.1038/s41586-023-06030-7
8DZQAPeptideOpioidκHomo sapiensmomSalB-Go/β1/γ22.822023-05-03doi.org/10.1038/s41586-023-06030-7
8DZQ (No Gprot) APeptideOpioidκHomo sapiensmomSalB-2.822023-05-03doi.org/10.1038/s41586-023-06030-7
8DZRAPeptideOpioidκHomo sapiensGR89,696-chim(NtGi2-Gt3)/β1/γ22.612023-05-03doi.org/10.1038/s41586-023-06030-7
8DZR (No Gprot) APeptideOpioidκHomo sapiensGR89,696-2.612023-05-03doi.org/10.1038/s41586-023-06030-7
8DZSAPeptideOpioidκHomo sapiensGR89,696-chim(NtGi2-Gz)/β1/γ22.652023-05-03doi.org/10.1038/s41586-023-06030-7
8DZS (No Gprot) APeptideOpioidκHomo sapiensGR89,696-2.652023-05-03doi.org/10.1038/s41586-023-06030-7
7Y1FAPeptideOpioidκHomo sapiensDynorphin-Gi1/β1/γ23.32023-05-24doi.org/10.1093/procel/pwac033
7Y1F (No Gprot) APeptideOpioidκHomo sapiensDynorphin-3.32023-05-24doi.org/10.1093/procel/pwac033
9MQKAPeptideOpioidκHomo sapiensIsoquinuclidine--3.182025-02-12doi.org/10.1101/2025.01.09.632033
9MQLAPeptideOpioidκHomo sapiensIsoquinuclidine--2.962025-02-12doi.org/10.1101/2025.01.09.632033
8VVEAPeptideOpioidκHomo sapiensnorBNI-Gi1/β1/γ23.32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVE (No Gprot) APeptideOpioidκHomo sapiensnorBNI-3.32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVFAPeptideOpioidκHomo sapiensJDTic-Gi1/β1/γ232025-01-15doi.org/10.1038/s41589-024-01812-0
8VVF (No Gprot) APeptideOpioidκHomo sapiensJDTic-32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVGAPeptideOpioidκHomo sapiensGB18-Gi1/β1/γ23.32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVG (No Gprot) APeptideOpioidκHomo sapiensGB18-3.32025-01-15doi.org/10.1038/s41589-024-01812-0
9D61APeptideOpioidκHomo sapiensJDTic-Gi1/β1/γ23.582025-01-15doi.org/10.1038/s41589-024-01812-0
9D61 (No Gprot) APeptideOpioidκHomo sapiensJDTic-3.582025-01-15doi.org/10.1038/s41589-024-01812-0




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8VVE_nogp.zip



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