Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.28167600
2R:R:I14 2.92504
3R:R:F40 6.745417
4R:R:P49 4.306567
5R:R:Y53 6.55467
6R:R:F55 6.96667606
7R:R:N56 7.0575459
8R:R:L57 5.8575419
9R:R:D61 8.2125419
10R:R:F62 4.13407
11R:R:L64 6.06407
12R:R:R71 6.385426
13R:R:Y74 7.976525
14R:R:Y75 8.15667625
15R:R:R79 7.065425
16R:R:W81 7.226528
17R:R:M97 7.2025476
18R:R:N98 6.27408
19R:R:Y114 8.29639
20R:R:V118 6.555437
21R:R:H119 4.8537
22R:R:V136 5.2457
23R:R:W140 5.955459
24R:R:Y149 6.15487
25R:R:E166 7.46524
26R:R:F168 8.106544
27R:R:F181 7.6975445
28R:R:Q182 6.3975405
29R:R:F185 6.748508
30R:R:L189 4.6575406
31R:R:Y233 10.4125409
32R:R:L234 3.195405
33R:R:R240 8.384545
34R:R:L244 6.4975445
35R:R:T246 3.95403
36R:R:D253 4.8725402
37R:R:H257 8.29504
38R:R:H261 9.5405
39R:R:Y268 7.135407
40R:R:D274 7.064519
41R:R:Y278 5.86125819
42R:R:Y279 5.86517
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R71 83.3589.74YesYes006
2R:R:R71 R:R:Y74 28.47538.23YesYes265
3R:R:H257 R:R:R79 15.24317.9YesYes045
4R:R:H257 R:R:I9 14.27387.95YesNo044
5R:R:R71 R:R:Y75 49.86135.14YesYes265
6R:R:H261 R:R:Y75 19.09389.8YesYes055
7R:R:M18 R:R:Y75 18.485619.16NoYes055
8R:R:I14 R:R:M18 10.1574.37YesNo045
9R:R:H261 R:R:I14 10.81083.98YesYes054
10L:L:?1 R:R:Y268 10010.58YesYes007
11R:R:L64 R:R:Y268 83.16047.03YesYes077
12R:R:L64 R:R:S271 61.43617.51YesNo079
13R:R:D61 R:R:S271 61.45137.36YesNo099
14R:R:D61 R:R:N33 24.73118.08YesNo099
15R:R:L64 R:R:N98 29.67276.87YesYes078
16R:R:L63 R:R:N98 20.72459.61NoYes078
17R:R:I66 R:R:L63 20.23424.28NoNo057
18R:R:F62 R:R:I66 20.19615.02YesNo075
19R:R:F62 R:R:N33 21.24153.62YesNo079
20R:R:D61 R:R:L57 22.63285.43YesYes199
21R:R:L57 R:R:Y278 22.01327.03YesYes199
22R:R:L54 R:R:Y278 36.78874.69NoYes189
23R:R:F40 R:R:L54 42.95434.87YesNo178
24R:R:F40 R:R:Y279 10.263410.32YesYes177
25R:R:D274 R:R:D61 25.293611.98YesYes199
26R:R:D274 R:R:Y278 61.0185.75YesYes199
27R:R:T267 R:R:Y268 25.46476.24NoYes087
28R:R:T267 R:R:Y233 25.42678.74NoYes089
29R:R:N270 R:R:Y233 43.414313.96NoYes099
30R:R:D274 R:R:N270 42.97346.73YesNo099
31R:R:F62 R:R:L37 36.53024.87YesNo078
32R:R:F55 R:R:L37 34.76263.65YesNo068
33R:R:F55 R:R:N56 41.66193.62YesYes069
34R:R:N56 R:R:V136 27.247510.35YesYes597
35R:R:V136 R:R:V52 25.01624.81YesNo077
36R:R:A132 R:R:V52 23.48045.09NoNo087
37R:R:A132 R:R:P49 12.63543.74NoYes687
38R:R:W81 R:R:Y74 14.24347.72YesYes285
39L:L:?1 R:R:S167 28.79466.02YesNo004
40R:R:L92 R:R:S167 20.39384.5NoNo064
41R:R:H155 R:R:L92 15.69167.71NoNo046
42R:R:H155 R:R:R89 12.26293.39NoNo046
43R:R:N56 R:R:W140 12.53663.39YesYes599
44R:R:G101 R:R:W140 10.0432.81NoYes079
45R:R:E184 R:R:I103 16.0685.47NoNo058
46R:R:R113 R:R:Y278 56.66938.23NoYes199
47R:R:I222 R:R:R113 62.51572.51NoNo079
48R:R:I199 R:R:I222 57.5745.89NoNo087
49R:R:I199 R:R:V117 56.01937.68NoNo088
50R:R:V117 R:R:V118 36.32113.21NoYes087
51R:R:V118 R:R:Y114 17.155112.62YesYes379
52R:R:H119 R:R:V118 15.44465.54YesYes377
53R:R:F168 R:R:S167 18.41333.96YesNo044
54R:R:F168 R:R:H177 13.82529.05YesNo045
55L:L:?1 R:R:L264 15.33814.16YesNo006
56R:R:F168 R:R:L264 13.25886.09YesNo046
57R:R:E184 R:R:F181 14.8633.5NoYes055
58R:R:F168 R:R:F181 10.396517.15YesYes445
59R:R:F168 R:R:R240 15.18614.28YesYes445
60R:R:F181 R:R:Q182 10.50675.86YesYes055
61R:R:F229 R:R:Y233 15.12159.28NoYes099
62R:R:F185 R:R:F229 13.74545.36YesNo089
63R:R:F185 R:R:L234 10.11143.65YesYes085
64R:R:L203 R:R:V117 19.32952.98NoNo088
65R:R:F285 R:R:F40 13.61235.36NoYes197
66R:R:F285 R:R:S282 12.255311.89NoNo098
67R:R:P283 R:R:S282 10.49531.78NoNo058
68R:R:F243 R:R:R240 14.51711.76NoYes445
69R:R:F243 R:R:V256 13.33872.62NoNo043
70R:R:I103 R:R:Y233 17.05259.67NoYes089
71R:R:F40 R:R:F55 24.38516.43YesYes076
72R:R:F181 R:R:R240 10.67024.28YesYes455
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:R71 9.74 0 Yes Yes 0 6 0 1
L:L:?1 R:R:L95 8.32 0 Yes No 0 6 0 1
L:L:?1 R:R:R99 4.87 0 Yes No 0 8 0 1
L:L:?1 R:R:S167 6.02 0 Yes No 0 4 0 1
L:L:?1 R:R:L264 4.16 0 Yes No 0 6 0 1
L:L:?1 R:R:Y268 10.58 0 Yes Yes 0 7 0 1
R:R:L64 R:R:Y268 7.03 0 Yes Yes 7 7 2 1
R:R:L68 R:R:Y268 4.69 0 No Yes 8 7 2 1
R:R:R71 R:R:Y74 8.23 2 Yes Yes 6 5 1 2
R:R:R71 R:R:Y75 5.14 2 Yes Yes 6 5 1 2
R:R:Y74 R:R:Y75 7.94 2 Yes Yes 5 5 2 2
R:R:L92 R:R:S167 4.5 0 No No 6 4 2 1
R:R:E184 R:R:R99 4.65 0 No No 5 8 2 1
R:R:F168 R:R:S167 3.96 4 Yes No 4 4 2 1
R:R:F168 R:R:L264 6.09 4 Yes No 4 6 2 1
R:R:T267 R:R:Y268 6.24 0 No Yes 8 7 2 1
R:R:L260 R:R:L264 2.77 0 No No 4 6 2 1
R:R:L22 R:R:R71 2.43 0 No Yes 7 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8Z8A_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 263
Number of Links 296
Number of Hubs 42
Number of Links mediated by Hubs 153
Number of Communities 8
Number of Nodes involved in Communities 45
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 73
Number Of Links MetaPath 72
Number of Shortest Paths 57698
Length Of Smallest Path 3
Average Path Length 13.1821
Length of Longest Path 24
Minimum Path Strength 1.49
Average Path Strength 6.49011
Maximum Path Strength 14.48
Minimum Path Correlation 0.7
Average Path Correlation 0.92285
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 47.2814
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.2729
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code2OP
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code2OP
NameL-Lactic acid
Synonyms(S)-(+)-lactic acid
Identifier
FormulaC3 H6 O3
Molecular Weight90.078
SMILES
PubChem107689
Formal Charge0
Total Atoms12
Total Chiral Atoms1
Total Bonds11
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9BXC0
Sequence
>8Z8A_nogp_Chain_R
CCRIEGDTI SQVMPPLLI VAFVLGALG NGVALCGFC FHMKTWKPS 
TVYLFNLAV ADFLLMICL PFRTDYYLR RRHWAFGDI PCRVGLFTL 
AMNRAGSIV FLTVVAADR YFKVVHPHH AVNTISTRV AAGIVCTLW 
ALVILGTVY LLLENHLCV QETAVSCES FIMESANGW HDIMFQLEF 
FMPLGIILF CSFKIVWSL RRRQQLARQ ARMKKATRF IMVVAIVFI 
TCYLPSVSA RLYFLWTVP SSACDPSVH GALHITLSF TYMNSMLDP 
LVYYFSSPS FP


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9IZDAAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiensCHBA-Gi1/β1/γ23.162025-04-02doi.org/10.1371/journal.pbio.3003126
9IZD (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiensCHBA-3.162025-04-02doi.org/10.1371/journal.pbio.3003126
9J8ZAAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiens--Gi1/β1/γ23.362025-04-02doi.org/10.1371/journal.pbio.3003126
9J8Z (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiens--3.362025-04-02doi.org/10.1371/journal.pbio.3003126
8Z8AAAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiensLactate-Gi1/β1/γ22.822025-10-29To be published
8Z8A (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiensLactate-2.822025-10-29To be published
8Z8BAAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiens--Gi1/β1/γ22.652025-10-29To be published
8Z8B (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiens--2.652025-10-29To be published
8Z87AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiensCHBA-Gi1/β1/γ22.732025-11-05To be published
8Z87 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiensCHBA-2.732025-11-05To be published
9KT9AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiens3,5-DHBA-Gi1/β1/γ22.72025-12-1010.1021/acs.jmedchem.4c02567
9KT9 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA1Homo sapiens3,5-DHBA-2.72025-12-1010.1021/acs.jmedchem.4c02567




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8Z8A_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.