Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V41 5.53407
2R:R:D42 3.4675499
3R:R:S44 5497
4R:R:P52 3.78518
5R:R:L55 3.9225406
6R:R:L62 5.665405
7R:R:D63 9.8925499
8R:R:I64 4.875416
9R:R:N67 4.0925409
10R:R:F77 4.02714717
11R:R:F80 5.722517
12R:R:E85 4.6954168
13R:R:L86 3.985408
14R:R:N91 4.5025409
15R:R:L93 5.925419
16R:R:I96 4.47619
17R:R:H97 9.9554188
18R:R:L110 3.805419
19R:R:Q113 6.234579
20R:R:L117 4.9875418
21R:R:V120 3.325617
22R:R:L131 3.6519
23R:R:L134 4.4975419
24R:R:R135 8.2875479
25R:R:L136 4.55409
26R:R:D137 7.825479
27R:R:D147 3.0825413
28R:R:S148 4.685418
29R:R:F149 4.00143719
30R:R:L155 3.6519
31R:R:H157 5.3075409
32R:R:L158 4.086509
33R:R:W159 6.612579
34R:R:D161 7.9375479
35R:R:P169 4.4575409
36R:R:L176 4.7025419
37R:R:L179 4.706519
38R:R:L182 4.706508
39R:R:L184 4.1725409
40R:R:N187 4.81254199
41R:R:I192 3.864518
42R:R:F195 6.0475452
43R:R:F197 4.16125819
44R:R:L203 4.428519
45R:R:L206 3.81509
46R:R:L208 3.8275409
47R:R:H209 9.3449
48R:R:L216 3.63667616
49R:R:H219 7.385455
50R:R:C220 5.345415
51R:R:F221 4.43619
52R:R:L224 4.165419
53R:R:L230 4.052509
54R:R:Y234 8.0125446
55R:R:F240 5.18571719
56R:R:I244 3.48418
57R:R:L253 4.6375409
58R:R:F255 4.984509
59R:R:H256 14.446549
60R:R:N258 4.8125419
61R:R:I260 3.74419
62R:R:V262 2.715405
63R:R:F268 3.75429719
64R:R:I277 2.932518
65R:R:H278 4.575448
66R:R:V287 3.35519
67R:R:F292 4.22833619
68R:R:H293 12.478567
69R:R:L298 4.7925419
70R:R:I303 4.235418
71R:R:F312 6.08618
72R:R:L324 3.46409
73R:R:L326 3.626517
74R:R:I334 4.994517
75R:R:L350 4.36167619
76R:R:I355 7.525418
77R:R:F361 3.375416
78R:R:E369 5.894217
79R:R:I370 4.28417
80R:R:L372 3.354518
81R:R:N375 5.595419
82R:R:I377 5.702517
83R:R:Y378 9.4554221
84R:R:I380 3.202517
85R:R:T384 4.79418
86R:R:F385 5.428519
87R:R:Q386 3.81404
88R:R:L388 3.515418
89R:R:L394 4.588517
90R:R:L396 4.9425409
91R:R:S397 4.98588
92R:R:N399 5.585419
93R:R:I401 4.10571718
94R:R:I404 3.382517
95R:R:H405 5.575406
96R:R:L418 3.805419
97R:R:D419 9.755489
98R:R:S421 5.0775487
99R:R:F422 8.5275484
100R:R:N423 4.8675419
101R:R:L425 4.482519
102R:R:F428 3.386514
103R:R:L433 2.58333619
104R:R:L436 3.8175418
105R:R:N437 3.3675405
106R:R:L439 4.27333618
107R:R:L441 3.6775418
108R:R:N444 4.8419
109R:R:F456 4.19505
110R:R:L462 4.758507
111R:R:V464 4.3585107
112R:R:Y466 5.9456106
113R:R:Y468 8.06833639
114R:R:F473 3.88508
115R:R:F529 5.88254118
116R:R:Y534 5.192504
117R:R:L535 5.99439
118R:R:F549 5.0825255
119R:R:F555 4.0565265
120R:R:N556 5.645409
121R:R:I560 3.65404
122R:R:K574 6.33427
123R:R:F576 4.026526
124R:R:L579 4.3407
125R:R:N584 4.945409
126R:R:M587 4.6765156
127R:R:T595 3.8725257
128R:R:F605 5.85167639
129R:R:W612 4.991676279
130R:R:E613 6.9875439
131R:R:F627 4.502505
132R:R:E630 6.46254288
133R:R:E642 9.35833628
134R:R:R643 7.91167628
135R:R:F662 6.69424
136R:R:Y687 8.135125
137R:R:P691 4.972539
138R:R:L694 4.574507
139R:R:P695 3.82754129
140R:R:F696 3.9275407
141R:R:P697 5.212507
142R:R:F706 8.1665125
143R:R:M721 3.8754147
144R:R:Y725 5.864148
145R:R:M745 6.42427
146R:R:I746 4.13407
147R:R:H748 8.24429
148R:R:I753 4.37254149
149R:R:N756 5.025409
150R:R:F759 6.9185139
151R:R:F760 5.9525408
152R:R:P779 3.72754118
153R:R:F790 5.4225155
154R:R:P791 4.06254159
155R:R:L792 5.18754139
156R:R:Y801 7.39833629
157R:R:N805 7.152528
158R:R:K807 6.36426
159R:R:F808 6.55407
160H:H:?2 11.578560
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:G45 R:R:N67 80.73231.7NoYes089
2R:R:G45 R:R:S44 80.22561.86NoYes087
3R:R:D63 R:R:S44 77.18028.83YesYes997
4R:R:D63 R:R:Q87 76.67922.19YesNo098
5R:R:Q87 R:R:T111 73.13174.25NoNo089
6R:R:R135 R:R:T111 40.62937.76YesNo799
7R:R:R135 R:R:W159 24.886410YesYes799
8R:R:L88 R:R:N91 82.04034.12NoYes099
9R:R:L112 R:R:L88 87.82934.15NoNo099
10R:R:L110 R:R:L112 13.2654.15YesNo099
11R:R:Q113 R:R:T111 31.99569.92YesNo799
12R:R:L112 R:R:L136 75.05854.15NoYes099
13R:R:L110 R:R:L134 16.96144.15YesYes199
14R:R:L134 R:R:L136 13.3116.92YesYes099
15R:R:L134 R:R:L158 30.69244.15YesYes099
16R:R:N114 R:R:Q113 15.2376.6NoYes099
17R:R:D137 R:R:Q113 15.23733.92YesYes799
18R:R:D137 R:R:R135 15.236210.72YesYes799
19R:R:A138 R:R:N114 14.7293.13NoNo099
20R:R:L136 R:R:L160 62.07584.15YesNo099
21R:R:L158 R:R:L160 13.3816.92YesNo099
22R:R:D137 R:R:D161 29.457413.31YesYes799
23R:R:D161 R:R:W159 14.73253.35YesYes799
24R:R:A138 R:R:D162 14.22143.09NoNo099
25R:R:D161 R:R:D162 42.66649.31YesNo099
26R:R:L158 R:R:L182 47.31514.15YesYes098
27R:R:L160 R:R:L184 49.04344.15NoYes099
28R:R:L182 R:R:L184 13.45415.54YesYes089
29R:R:D162 R:R:L186 54.8566.79NoNo099
30R:R:L182 R:R:L206 61.65314.15YesYes089
31R:R:L184 R:R:L208 35.85834.15YesYes099
32R:R:L206 R:R:L208 13.51515.54YesYes099
33R:R:H209 R:R:N210 32.50797.65YesNo099
34R:R:L186 R:R:N210 52.82454.12NoNo099
35R:R:L206 R:R:L230 76.41774.15YesYes099
36R:R:H207 R:R:H209 26.41288.36NoYes499
37R:R:H207 R:R:V205 24.38232.77NoNo099
38R:R:T229 R:R:V205 20.31874.76NoNo099
39R:R:L208 R:R:L232 13.50692.77YesNo099
40R:R:L230 R:R:L232 13.57635.54YesNo099
41R:R:N210 R:R:Y234 18.285915.12NoYes096
42R:R:L216 R:R:P241 11.88054.93YesNo169
43R:R:L230 R:R:L253 91.63364.15YesYes099
44R:R:E252 R:R:T229 18.28695.64NoNo099
45R:R:E252 R:R:K251 16.25514.05NoNo099
46R:R:H256 R:R:Y234 10.15873.27YesYes496
47R:R:F255 R:R:L253 30.72836.09YesYes099
48R:R:L253 R:R:L274 61.24322.77YesNo099
49R:R:F268 R:R:L274 30.56383.65YesNo199
50R:R:K251 R:R:R275 12.19142.48NoNo095
51R:R:F255 R:R:I277 35.2532.51YesYes098
52R:R:I277 R:R:L274 30.71782.85YesNo189
53R:R:F292 R:R:I277 65.61182.51YesYes198
54R:R:F268 R:R:F292 42.97734.29YesYes199
55R:R:F292 R:R:I303 81.40263.77YesYes198
56R:R:F292 R:R:L301 27.36819.74YesNo199
57R:R:L301 R:R:L324 27.34454.15NoYes099
58R:R:I303 R:R:L326 81.75614.28YesYes187
59R:R:L326 R:R:L350 79.72714.15YesYes179
60R:R:L324 R:R:L348 27.29154.15YesNo099
61R:R:F361 R:R:L348 27.27362.44YesNo069
62R:R:L350 R:R:L372 79.80574.15YesYes198
63R:R:F361 R:R:F385 27.08223.22YesYes169
64R:R:I370 R:R:L372 25.94792.85YesYes178
65R:R:F385 R:R:L394 25.70724.87YesYes197
66R:R:I370 R:R:L394 25.85952.85YesYes177
67R:R:L372 R:R:L396 52.5974.15YesYes089
68R:R:L394 R:R:L396 25.8648.3YesYes079
69R:R:L394 R:R:L418 77.34174.15YesYes179
70R:R:L396 R:R:V420 26.29554.47YesNo096
71R:R:F428 R:R:V420 26.18462.62YesNo046
72R:R:L418 R:R:L439 75.23544.15YesYes198
73R:R:F428 R:R:L439 25.2832.44YesYes148
74R:R:L439 R:R:L462 1004.15YesYes087
75R:R:L462 R:R:V464 97.94944.47YesYes077
76R:R:P465 R:R:V464 48.45853.53NoYes1097
77R:R:P465 R:R:Y466 48.32626.95NoYes1096
78R:R:Q469 R:R:V464 48.45858.6NoYes1097
79R:R:Q469 R:R:Y466 48.32625.64NoYes1096
80R:R:I610 R:R:Y466 95.31534.84NoYes076
81R:R:I610 R:R:Y468 95.04782.42NoYes079
82R:R:P691 R:R:Y468 86.95414.17YesYes399
83R:R:P691 R:R:S690 82.15975.34YesNo098
84R:R:L692 R:R:S690 77.8694.5NoNo078
85R:R:L692 R:R:L694 76.79582.77NoYes077
86R:R:F790 R:R:L694 44.37946.09YesYes057
87R:R:F790 R:R:P791 13.54554.33YesYes1559
88R:R:I548 R:R:P791 10.03663.39NoYes079
89R:R:F790 R:R:M587 30.04087.46YesYes1556
90R:R:A794 R:R:M587 17.33433.22NoYes086
91R:R:A794 R:R:N584 17.06384.69NoYes089
92R:R:L694 R:R:P695 17.32563.28YesYes079
93R:R:P695 R:R:V626 12.44953.53YesNo1296
94R:R:G677 R:R:V626 12.18073.68NoNo086
95R:R:F623 R:R:G677 11.63943.01NoNo048
96R:R:F623 R:R:F627 11.37465.36NoYes045
97R:R:F627 R:R:F670 21.12525.36YesNo053
98R:R:F670 R:R:L579 18.95977.31NoYes037
99R:R:M587 R:R:S628 12.46584.6YesNo068
100R:R:F586 R:R:S628 12.19442.64NoNo068
101R:R:F586 R:R:F627 11.38116.43NoYes065
102R:R:L579 R:R:L635 13.00295.54YesNo075
103R:R:F576 R:R:L635 11.9212.44YesNo065
104R:R:F696 R:R:L694 14.08584.87YesYes077
105R:R:F696 R:R:P697 13.28784.33YesYes077
106R:R:N67 R:R:N91 85.24234.09YesYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9KB6
Class A
SubFamily Orphan
Type Orphan
SubType LGR4
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.53
Date 2025-10-15
D.O.I. doi.org/10.1038/s41467-025-64129-z
Net Summary
Imin 2.42
Number of Linked Nodes 713
Number of Links 915
Number of Hubs 160
Number of Links mediated by Hubs 563
Number of Communities 28
Number of Nodes involved in Communities 230
Number of Links involved in Communities 328
Path Summary
Number Of Nodes in MetaPath 107
Number Of Links MetaPath 106
Number of Shortest Paths 15506749
Length Of Smallest Path 3
Average Path Length 47.7951
Length of Longest Path 67
Minimum Path Strength 1.07
Average Path Strength 4.36695
Maximum Path Strength 27.905
Minimum Path Correlation 0.78
Average Path Correlation 0.999864
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 39.5655
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 64.697
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• multicellular organismal process   • tissue remodeling   • bone remodeling   • developmental process   • epithelium development   • cell population proliferation   • tube development   • morphogenesis of an epithelium   • tissue development   • renal system development   • epithelial cell proliferation involved in renal tubule morphogenesis   • tissue morphogenesis   • anatomical structure morphogenesis   • multicellular organism development   • tube morphogenesis   • anatomical structure development   • renal tubule development   • cellular process   • epithelial tube morphogenesis   • epithelial cell proliferation   • renal tubule morphogenesis   • system development   • cellular developmental process   • ossification   • cell differentiation   • osteoblast differentiation   • cellular response to stimulus   • positive regulation of response to biotic stimulus   • regulation of cellular process   • pattern recognition receptor signaling pathway   • response to stimulus   • toll-like receptor signaling pathway   • negative regulation of biological process   • regulation of signal transduction   • response to biotic stimulus   • cell communication   • immune response-activating signaling pathway   • positive regulation of immune response   • regulation of immune system process   • signal transduction   • positive regulation of immune system process   • innate immune response-activating signaling pathway   • regulation of biological process   • immune response   • response to other organism   • regulation of innate immune response   • response to external stimulus   • regulation of response to stimulus   • defense response to other organism   • regulation of pattern recognition receptor signaling pathway   • positive regulation of defense response   • activation of innate immune response   • regulation of immune response   • regulation of toll-like receptor signaling pathway   • activation of immune response   • regulation of defense response   • regulation of response to biotic stimulus   • biological process involved in interspecies interaction between organisms   • regulation of response to external stimulus   • signaling   • negative regulation of signaling   • positive regulation of biological process   • negative regulation of cell communication   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • immune response-regulating signaling pathway   • regulation of response to stress   • response to stress   • innate immune response   • negative regulation of cellular process   • response to external biotic stimulus   • regulation of signaling   • positive regulation of innate immune response   • defense response   • negative regulation of response to stimulus   • biological regulation   • defense response to symbiont   • negative regulation of signal transduction   • negative regulation of toll-like receptor signaling pathway   • negative regulation of immune system process   • immune system process   • regulation of cell communication   • spermatogenesis   • sexual reproduction   • reproductive process   • multicellular organismal reproductive process   • developmental process involved in reproduction   • male gamete generation   • gamete generation   • bone mineralization   • animal organ development   • biomineral tissue development   • mesonephric epithelium development   • kidney epithelium development   • branching morphogenesis of an epithelial tube   • nephron tubule morphogenesis   • regulation of kidney development   • regulation of branching involved in ureteric bud morphogenesis   • positive regulation of developmental process   • animal organ morphogenesis   • nephron development   • regulation of morphogenesis of a branching structure   • regulation of animal organ morphogenesis   • positive regulation of multicellular organismal process   • mesonephric tubule development   • regulation of developmental process   • nephron morphogenesis   • nephron epithelium morphogenesis   • nephron tubule development   • ureteric bud morphogenesis   • positive regulation of morphogenesis of an epithelium   • branching involved in ureteric bud morphogenesis   • regulation of morphogenesis of an epithelium   • regulation of multicellular organismal process   • regulation of anatomical structure morphogenesis   • nephron epithelium development   • ureteric bud development   • mesonephros development   • kidney morphogenesis   • morphogenesis of a branching structure   • positive regulation of branching involved in ureteric bud morphogenesis   • mesonephric tubule morphogenesis   • kidney development   • morphogenesis of a branching epithelium   • digestive system development   • digestive tract development   • epidermis development   • molting cycle process   • hair cycle   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • hair cycle process   • genitalia development   • reproductive system development   • sex differentiation   • male sex differentiation   • male genitalia development   • reproductive structure development   • multicellular organismal-level homeostasis   • homeostatic process   • homeostasis of number of cells   • intestinal stem cell homeostasis   • regulation of biosynthetic process   • rhythmic process   • circadian regulation of gene expression   • circadian rhythm   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • cytokine production   • regulation of cytokine production   • negative regulation of macromolecule metabolic process   • negative regulation of metabolic process   • negative regulation of cytokine production   • negative regulation of gene expression   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • negative regulation of multicellular organismal process   • metanephric tubule morphogenesis   • metanephric epithelium development   • metanephros development   • metanephros morphogenesis   • metanephric nephron tubule morphogenesis   • metanephric nephron development   • metanephric nephron epithelium development   • metanephric nephron tubule development   • metanephric nephron morphogenesis   • metanephric tubule development   • cell surface receptor signaling pathway   • Wnt signaling pathway   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of canonical Wnt signaling pathway   • canonical Wnt signaling pathway   • positive regulation of Wnt signaling pathway   • positive regulation of cellular process   • positive regulation of canonical Wnt signaling pathway   • regulation of Wnt signaling pathway   • positive regulation of signaling   • negative regulation of cold-induced thermogenesis   • adaptive thermogenesis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • metanephric glomerulus development   • glomerulus development   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNAG
PDB ResiduesH:H:?1 H:H:?2 H:H:?3 H:H:?4
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetylchitosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0



This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9KB6AOrphanOrphanLGR4Homo sapiens---3.532025-10-15doi.org/10.1038/s41467-025-64129-z
9KB7AOrphanOrphanLGR4Homo sapiensR-spondin-2--3.972025-10-15doi.org/10.1038/s41467-025-64129-z
9KB8AOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF3; ZNRF33.252025-10-15doi.org/10.1038/s41467-025-64129-z
9KB9AOrphanOrphanLGR4; LGR4Homo sapiensR-spondin-2-ZNRF3; ZNRF33.592025-10-15doi.org/10.1038/s41467-025-64129-z
8WVUAOrphanOrphanLGR4Homo sapiensR-spondin-1-RNF433.612024-10-30To be published
8WVVAOrphanOrphanLGR4Homo sapiens---3.352024-10-30To be published
8WVWAOrphanOrphanLGR4Homo sapiens---3.532024-10-30To be published
8WVXAOrphanOrphanLGR4Homo sapiensNorrin--3.322024-10-30To be published
8WVYAOrphanOrphanLGR4Homo sapiensNorrin--3.292024-10-30To be published
8XFPAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF3; ZNRF33.212024-12-04doi.org/10.1038/s41467-024-55431-3
8XFSAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF3; ZNRF33.22024-12-04doi.org/10.1038/s41467-024-55431-3
8XFTAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.242024-12-04doi.org/10.1038/s41467-024-55431-3
8Y69AOrphanOrphanLGR4; LGR4Homo sapiensR-spondin-2-ZNRF33.382024-12-04doi.org/10.1038/s41467-024-55431-3
8XT9AOrphanOrphanLGR4Homo sapiens---3.12025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XUMAOrphanOrphanLGR4Homo sapiensR-spondin-2--2.92025-01-15doi.org/10.1016/j.molcel.2025.01.024
9KGKAOrphanOrphanLGR4Homo sapiensNB18--2.632025-07-16To be published
9KHHAOrphanOrphanLGR4Homo sapiensNorrin--3.652025-07-16To be published
9S37AOrphanOrphanLGR4Homo sapiensNB21--3.942025-07-30To be published
9S38AOrphanOrphanLGR4Homo sapiensNB21--3.942025-09-03To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KB6.zip



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