Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:W13 6.2875400
2L:L:W14 10.8575410
3L:L:Y17 10.525410
4L:L:R20 8.154510
5R:R:L52 4.302507
6R:R:Y64 7.344537
7R:R:D72 8.34429
8R:R:F75 4.796506
9R:R:Y99 11.215403
10R:R:F104 5.508505
11R:R:Y106 7.0225407
12R:R:F107 6.454566
13R:R:F112 5.635627
14R:R:E119 8.475439
15R:R:R120 6.125479
16R:R:R134 7.87333639
17R:R:S139 6.485439
18R:R:W147 7.22429
19R:R:R153 7.3675464
20R:R:E157 5.3725404
21R:R:L160 5.335483
22R:R:D177 7.0925414
23R:R:L198 5.17408
24R:R:F225 6.395408
25R:R:F232 5.26167655
26R:R:Q235 5.16333653
27R:R:F237 6.3275405
28R:R:L240 6.57514
29R:R:W241 8.766513
30R:R:F250 5.6675413
31R:R:C251 4.2225401
32R:R:F259 3.7825405
33R:R:I271 4.3408
34R:R:Y272 5.12833649
35R:R:F273 5.7975407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:P11 L:L:W13 16.94524.05NoYes000
2L:L:W13 L:L:W14 30.00399.37YesYes000
3L:L:W14 R:R:L240 19.005111.39YesYes104
4L:L:Q18 L:L:Y17 12.84499.02NoYes100
5L:L:Y17 R:R:F250 10.16326.19YesYes103
6L:L:Y17 R:R:H254 23.027618.51YesNo001
7L:L:R20 R:R:L240 16.58897.29YesYes104
8L:L:R20 R:R:Y99 13.570418.52YesYes003
9L:L:R20 R:R:E157 19.71115.82YesYes004
10R:R:D177 R:R:W241 14.334813.4YesYes143
11R:R:P100 R:R:Y99 11.5178.34NoYes043
12R:R:H254 R:R:I258 17.96225.3NoNo014
13R:R:I258 R:R:T34 21.88763.04NoNo045
14R:R:F259 R:R:T34 20.28113.89YesNo055
15R:R:I258 R:R:R79 27.063112.53NoNo046
16R:R:F75 R:R:R79 40.27728.55YesNo066
17R:R:F75 R:R:S265 31.48723.96YesNo069
18R:R:L76 R:R:S265 17.54763NoNo079
19R:R:L76 R:R:S38 15.85053NoNo075
20R:R:L80 R:R:S38 12.41746.01NoNo075
21R:R:F259 R:R:V37 10.37053.93YesNo057
22R:R:H254 R:R:Q235 17.33393.71NoYes013
23R:R:F232 R:R:Q235 23.38395.86YesYes553
24R:R:F232 R:R:Y106 44.28684.13YesYes057
25R:R:L110 R:R:Y106 10010.55NoYes077
26R:R:F225 R:R:L110 98.90536.09YesNo087
27R:R:F225 R:R:L113 57.87674.87YesNo088
28R:R:L113 R:R:Y272 56.59415.86NoYes089
29R:R:I65 R:R:Y272 39.21494.84NoYes489
30R:R:I65 R:R:L52 38.0362.85NoYes087
31R:R:L52 R:R:V48 15.28052.98YesNo079
32R:R:A69 R:R:V48 13.4153.39NoNo099
33R:R:A69 R:R:L49 11.53653.15NoNo097
34R:R:F236 R:R:Y99 19.21887.22NoYes043
35R:R:F232 R:R:F236 16.21975.36YesNo554
36R:R:D177 R:R:F237 25.40485.97YesYes045
37R:R:F237 R:R:G233 14.69753.01YesNo057
38R:R:F232 R:R:G233 15.72093.01YesNo057
39R:R:E157 R:R:R153 27.46478.14YesYes044
40R:R:F107 R:R:R153 19.71119.62YesYes664
41R:R:F107 R:R:Y106 37.09687.22YesYes067
42R:R:F237 R:R:T180 14.425411.67YesNo055
43R:R:F107 R:R:T180 13.24013.89YesNo665
44R:R:D72 R:R:S265 18.661711.78YesNo099
45R:R:F273 R:R:L52 13.3898.53YesYes077
46R:R:R153 R:R:S154 18.24073.95YesNo046
47R:R:F104 R:R:S154 17.91683.96YesNo056
48R:R:F104 R:R:W147 48.33537.02YesYes059
49R:R:N67 R:R:W147 38.69675.65NoYes299
50R:R:C143 R:R:N67 42.06511.02NoNo079
51R:R:C143 R:R:Y64 40.75664.03NoYes077
52R:R:E119 R:R:Y64 18.810713.47YesYes397
53R:R:E119 R:R:R134 14.658611.63YesYes399
54R:R:S139 R:R:Y64 17.800210.17YesYes397
55R:R:R134 R:R:S139 14.91775.27YesYes399
56R:R:F75 R:R:S105 41.54681.32YesNo068
57R:R:F104 R:R:S105 39.17611.32YesNo058
58R:R:F232 R:R:S261 10.62967.93YesNo057
59R:R:M102 R:R:R79 23.4816.2NoNo046
60R:R:G78 R:R:M102 21.84873.49NoNo054
61R:R:G78 R:R:L98 20.19043.42NoNo054
62R:R:I81 R:R:L98 15.403512.85NoNo054
63R:R:I81 R:R:L85 13.71942.85NoNo054
64R:R:I90 R:R:L85 10.286314.27NoNo054
65R:R:F107 R:R:L184 10.05968.53YesNo068
66R:R:F225 R:R:L191 38.13328.53YesNo088
67R:R:L191 R:R:S117 36.54624.5NoNo089
68R:R:R120 R:R:S117 29.03879.22YesNo799
69R:R:L198 R:R:R120 32.26454.86YesYes089
70R:R:L198 R:R:V124 17.04885.96YesNo088
71R:R:R201 R:R:V124 15.21572.62NoNo068
72R:R:L125 R:R:R201 13.35674.86NoNo076
73R:R:T221 R:R:Y272 11.82157.49NoYes089
74R:R:R134 R:R:W129 18.53226YesNo095
75R:R:H133 R:R:W129 12.40454.23NoNo055
76R:R:E157 R:R:S176 15.02142.87YesNo043
77R:R:L160 R:R:S176 13.18821.5YesNo033
78R:R:I271 R:R:Y272 14.94363.63YesYes089
79L:L:P11 R:R:S170 12.56643.56NoNo003
80R:R:F75 R:R:Y106 62.82556.19YesYes067
81R:R:F75 R:R:S261 10.73973.96YesNo067
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:P11 R:R:S170 3.56 0 No No 0 3 0 1
L:L:W13 R:R:H243 8.46 0 Yes No 0 1 0 1
L:L:W14 R:R:L240 11.39 1 Yes Yes 0 4 0 1
L:L:W14 R:R:W241 8.43 1 Yes Yes 0 3 0 1
L:L:M15 R:R:R246 3.72 1 No No 0 2 0 1
L:L:M15 R:R:F250 4.98 1 No Yes 0 3 0 1
L:L:Y17 R:R:F250 6.19 1 Yes Yes 0 3 0 1
L:L:Y17 R:R:H254 18.51 1 Yes No 0 1 0 1
L:L:Q18 R:R:L240 5.32 1 No Yes 0 4 0 1
L:L:R20 R:R:Y99 18.52 1 Yes Yes 0 3 0 1
L:L:R20 R:R:E157 5.82 1 Yes Yes 0 4 0 1
L:L:R20 R:R:C161 5.57 1 Yes No 0 4 0 1
L:L:R20 R:R:D177 3.57 1 Yes Yes 0 4 0 1
L:L:R20 R:R:L240 7.29 1 Yes Yes 0 4 0 1
L:L:Y21 R:R:P100 8.34 0 No No 0 4 0 1
L:L:Y21 R:R:W158 6.75 0 No No 0 4 0 1
R:R:P100 R:R:Y99 8.34 0 No Yes 4 3 1 1
R:R:M103 R:R:Y99 10.78 0 No Yes 2 3 2 1
R:R:F236 R:R:Y99 7.22 5 No Yes 4 3 2 1
R:R:E157 R:R:R153 8.14 0 Yes Yes 4 4 1 2
R:R:E157 R:R:F237 4.66 0 Yes Yes 4 5 1 2
R:R:C161 R:R:C173 7.28 0 No No 4 9 1 2
R:R:C173 R:R:W241 6.53 0 No Yes 9 3 2 1
R:R:Q174 R:R:W241 12.05 0 No Yes 3 3 2 1
R:R:D177 R:R:F237 5.97 1 Yes Yes 4 5 1 2
R:R:D177 R:R:L240 5.43 1 Yes Yes 4 4 1 1
R:R:D177 R:R:W241 13.4 1 Yes Yes 4 3 1 1
R:R:F236 R:R:Q235 3.51 5 No Yes 4 3 2 2
R:R:H254 R:R:Q235 3.71 0 No Yes 1 3 1 2
R:R:L240 R:R:W241 3.42 1 Yes Yes 4 3 1 1
R:R:C251 R:R:F250 4.19 0 Yes Yes 1 3 2 1
R:R:F250 R:R:L255 7.31 1 Yes No 3 2 1 2
R:R:H254 R:R:I258 5.3 0 No No 1 4 1 2
R:R:F163 R:R:W158 3.01 0 No No 4 4 2 1
R:R:D169 R:R:S170 2.94 0 No No 3 3 2 1
R:R:E157 R:R:S176 2.87 0 Yes No 4 3 1 2
R:R:L164 R:R:W158 2.28 0 No No 1 4 2 1
L:L:Y21 R:R:G162 1.45 0 No No 0 2 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8DWC_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.25
Number of Linked Nodes 237
Number of Links 261
Number of Hubs 35
Number of Links mediated by Hubs 128
Number of Communities 8
Number of Nodes involved in Communities 37
Number of Links involved in Communities 46
Path Summary
Number Of Nodes in MetaPath 82
Number Of Links MetaPath 81
Number of Shortest Paths 35308
Length Of Smallest Path 3
Average Path Length 12.4251
Length of Longest Path 27
Minimum Path Strength 1.3
Average Path Strength 6.13557
Maximum Path Strength 13.9233
Minimum Path Correlation 0.7
Average Path Correlation 0.917982
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.55556
Average % Of Corr. Nodes 47.1313
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.659
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • startle response   • multicellular organismal process   • system process   • nervous system process   • neuromuscular process   • response to external stimulus   • behavior   • locomotory behavior   • transmission of nerve impulse   • aggressive behavior   • trans-synaptic signaling   • synaptic signaling   • anterograde trans-synaptic signaling   • cell-cell signaling   • chemical synaptic transmission   • G protein-coupled opioid receptor signaling pathway   • behavioral defense response   • fear response   • behavioral fear response   • defense response   • response to stress   • multicellular organismal response to stress   • sensory perception   • sensory perception of pain   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to bacterium   • response to external biotic stimulus   • cellular anatomical structure   • extracellular region   • membrane-bounded organelle   • vesicle lumen   • intracellular anatomical structure   • chromaffin granule lumen   • intracellular vesicle   • membrane-enclosed lumen   • cytoplasmic vesicle lumen   • intracellular membrane-bounded organelle   • secretory granule lumen   • endomembrane system   • chromaffin granule   • intracellular organelle lumen
Gene OntologyCellular Component• cellular anatomical structure   • extracellular region   • membrane-bounded organelle   • vesicle lumen   • intracellular anatomical structure   • chromaffin granule lumen   • intracellular vesicle   • membrane-enclosed lumen   • cytoplasmic vesicle lumen   • intracellular membrane-bounded organelle   • secretory granule lumen   • endomembrane system   • chromaffin granule   • intracellular organelle lumen   • intracellular organelle   • cytoplasmic vesicle   • organelle lumen   • organelle   • secretory granule   • secretory vesicle   • cytoplasm   • vesicle   • somatodendritic compartment   • cell body   • neuronal cell body   • cell periphery   • plasma membrane   • membrane   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • axon   • synapse   • axon terminus   • presynapse   • distal axon   • cell junction   • neuron projection terminus   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular space   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • response to chloroquine   • cell surface receptor signaling pathway   • acute-phase response   • defense response   • response to stress   • inflammatory response   • acute inflammatory response   • cell surface
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ96LB2
Sequence
>8DWC_nogp_Chain_R
CYKQTLSLT VLTCIVSLV GLTGNAVVL WLLGCRMRR NAFSIYILN 
LAAADFLFL SGRLIYSLL SFISIPHTI SKILYPVMM FSYFAGLSF 
LSAVSTERC LSVLWPIWY RCHRPTHLS AVVCVLLWA LSLLRSILE 
WMLCGFLFS GADSAWCQT SDFITVAWL IFLCVVLCG SSLVLLIRI 
LCLTRLYVT ILLTVLVFL LCGLPFGIQ FFLFLWIHV DREVLFCHV 
HLVSIFLSA LNSSANPII YFFVGSF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8JGFAOrphanOrphanMRGPRX1Homo sapiensBAM8-22-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-1010.1038/s41467-023-40705-z
8JGF (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensBAM8-22-2.72024-01-1010.1038/s41467-023-40705-z
8JGGAOrphanOrphanMRGPRX1Homo sapiensBAM8-22-Gi1/β1/γ232024-01-1010.1038/s41467-023-40705-z
8JGG (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensBAM8-22-32024-01-1010.1038/s41467-023-40705-z
8JGBAOrphanOrphanMRGPRX1Homo sapiensConorfamide-Tx2-Gi1/β1/γ22.842024-01-1010.1038/s41467-023-40705-z
8JGB (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensConorfamide-Tx2-2.842024-01-1010.1038/s41467-023-40705-z
8HJ5AOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-chim(NtGi1-Gs-CtGq)/β1/γ232023-05-3110.1371/journal.pbio.3001975
8HJ5 (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-32023-05-3110.1371/journal.pbio.3001975
8DWHAOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-chim(NtGi2L-Gs-CtGq)/β1/γ23.252022-11-0210.1038/s41589-022-01173-6
8DWH (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-3.252022-11-0210.1038/s41589-022-01173-6
8DWGAOrphanOrphanMRGPRX1Homo sapiensProenkephalin-AML382chim(NtGi2L-Gs-CtGq)/β1/γ22.712022-11-0210.1038/s41589-022-01173-6
8DWG (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensProenkephalin-AML3822.712022-11-0210.1038/s41589-022-01173-6
8DWCAOrphanOrphanMRGPRX1Homo sapiensProenkephalin-A-chim(NtGi2L-Gs-CtGq)/β1/γ22.872022-11-0210.1038/s41589-022-01173-6
8DWC (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensProenkephalin-A-2.872022-11-0210.1038/s41589-022-01173-6




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8DWC_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.