Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:R17 6.7325440
2R:R:G41 1.88409
3R:R:L52 6.336527
4R:R:Y64 5.145607
5R:R:D72 8.985419
6R:R:F75 4.17333616
7R:R:L76 4.0375417
8R:R:R79 7.3975416
9R:R:Y99 6.4475403
10R:R:Y106 6.74667617
11R:R:F107 7.045406
12R:R:F112 8.96457
13R:R:Y130 6.8375437
14R:R:R134 6.718539
15R:R:W147 5.866559
16R:R:I218 5.0825408
17R:R:L230 2.776505
18R:R:F236 7.282544
19R:R:F237 8.52505
20R:R:I271 5.5475418
21R:R:Y272 7.56419
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F236 R:R:Y99 10.33843.09YesYes043
2R:R:M103 R:R:Y99 13.52424.79NoYes023
3R:R:M102 R:R:M103 14.34675.78NoNo042
4R:R:F75 R:R:M102 15.954.98YesNo064
5R:R:F75 R:R:R79 26.09066.41YesYes166
6R:R:R79 R:R:T34 18.72987.76YesNo165
7R:R:F259 R:R:T34 17.34512.59NoNo055
8R:R:F259 R:R:L33 11.60854.87NoNo056
9R:R:F236 R:R:F237 13.89916.08YesYes045
10R:R:F107 R:R:F237 25.08074.29YesYes065
11R:R:F107 R:R:Y106 77.855310.32YesYes067
12R:R:F75 R:R:Y106 76.89743.09YesYes167
13R:R:F75 R:R:S265 1002.64YesNo169
14R:R:L76 R:R:S265 27.60026.01YesNo179
15R:R:L76 R:R:S38 21.74913YesNo075
16R:R:L42 R:R:S38 19.87511.5NoNo075
17R:R:F73 R:R:L42 12.170710.96NoNo077
18R:R:D72 R:R:S265 72.347710.31YesNo199
19R:R:D72 R:R:N45 20.426914.81YesNo099
20R:R:N45 R:R:P269 16.8876.52NoNo099
21R:R:G41 R:R:L76 24.33111.71YesYes097
22R:R:G41 R:R:G44 19.97922.11YesNo098
23R:R:G44 R:R:T43 17.55341.82NoNo085
24R:R:A46 R:R:T43 15.10671.68NoNo065
25R:R:A46 R:R:W50 12.63925.19NoNo065
26R:R:P269 R:R:V48 15.55447.07NoNo099
27R:R:F273 R:R:V48 11.723114.42NoNo279
28R:R:F273 R:R:L52 12.19168.53NoYes277
29R:R:D72 R:R:N268 71.86885.39YesNo199
30R:R:L113 R:R:N268 69.57832.75NoNo189
31R:R:L113 R:R:Y272 69.43265.86NoYes189
32R:R:I65 R:R:Y272 73.33684.84NoYes089
33R:R:I65 R:R:V116 69.95313.07NoNo088
34R:R:V116 R:R:Y64 68.80796.31NoYes087
35R:R:E119 R:R:Y64 28.11048.98NoYes097
36R:R:E119 R:R:Y130 12.10836.73NoYes097
37R:R:V142 R:R:Y64 11.38993.79NoYes067
38R:R:C143 R:R:Y64 37.57424.03NoYes077
39R:R:C143 R:R:F112 19.87514.19NoYes577
40R:R:C143 R:R:N67 15.8987.87NoNo579
41R:R:N67 R:R:W147 13.97194.52NoYes599
42R:R:F112 R:R:W147 14.128111.02YesYes579
43R:R:F73 R:R:S77 10.19263.96NoNo075
44R:R:A108 R:R:W147 12.12913.89NoYes079
45R:R:F107 R:R:L184 67.40246.09YesNo068
46R:R:L184 R:R:L230 66.25722.77NoYes085
47R:R:F225 R:R:L230 51.94174.87NoYes085
48R:R:F225 R:R:L191 49.776218.27NoNo088
49R:R:L191 R:R:S114 11.82724.5NoNo088
50R:R:L191 R:R:S117 39.17754.5NoNo089
51R:R:S117 R:R:S195 34.33633.26NoNo098
52R:R:I218 R:R:S195 25.79914.64YesNo088
53R:R:E119 R:R:L122 15.63773.98NoNo096
54R:R:L122 R:R:W126 13.97192.28NoNo066
55R:R:L125 R:R:W126 11.94176.83NoNo076
56R:R:I218 R:R:L199 17.47018.56YesNo085
57R:R:I271 R:R:Y272 10.91113.3YesYes189
58R:R:L230 R:R:P231 11.79591.64YesNo059
59R:R:G41 R:R:S266 11.42111.86YesNo097
60L:L:R17 R:R:F236 11.35874.28YesYes404
61R:R:D72 R:R:L76 16.33525.43YesYes197
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:F15 R:R:F236 3.22 4 No Yes 0 4 0 1
L:L:R17 R:R:L160 7.29 4 Yes No 0 3 0 1
L:L:R17 R:R:F236 4.28 4 Yes Yes 0 4 0 1
L:L:R17 R:R:L240 12.15 4 Yes No 0 4 0 1
R:R:F236 R:R:Y99 3.09 4 Yes Yes 4 3 1 2
R:R:C161 R:R:L160 3.17 0 No No 4 3 2 1
R:R:D177 R:R:F237 13.14 0 No Yes 4 5 2 2
R:R:D177 R:R:L240 2.71 0 No No 4 4 2 1
R:R:F236 R:R:F237 16.08 4 Yes Yes 4 5 1 2
R:R:F236 R:R:L240 9.74 4 Yes No 4 4 1 1
L:L:R14 R:R:W241 2 0 No No 0 3 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8JGB_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.64
Number of Linked Nodes 203
Number of Links 219
Number of Hubs 21
Number of Links mediated by Hubs 84
Number of Communities 7
Number of Nodes involved in Communities 41
Number of Links involved in Communities 50
Path Summary
Number Of Nodes in MetaPath 62
Number Of Links MetaPath 61
Number of Shortest Paths 18878
Length Of Smallest Path 3
Average Path Length 12.8719
Length of Longest Path 31
Minimum Path Strength 1.38
Average Path Strength 5.52758
Maximum Path Strength 14.61
Minimum Path Correlation 0.7
Average Path Correlation 0.908617
Maximum Path Correlation 0.98
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 46.4331
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 35.7521
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ96LB2
Sequence
>8JGB_nogp_Chain_R
LSLTVLTCI VSLVGLTGN AVVLWLLGC RMRRNAFSI YILNLAAAD 
FLFLSGRLI YSLLSKILY PVMMFSYFA GLSFLSAVS TERCLSVLW 
PIWYRCHRP THLSAVVCV LLWALSLLR SILEWMLCG QTSDFITVA 
WLIFLCVVL CGSSLVLLI RILCLTRLY VTILLTVLV FLLCGLPFG 
IQFFLFLWF CHVHLVSIF LSALNSSAN PIIYFFVGS F


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8DWGAOrphanOrphanMRGPRX1Homo sapiensProenkephalin-AML382chim(NtGi2L-Gs-CtGq)/β1/γ22.712022-11-02doi.org/10.1038/s41589-022-01173-6
8DWG (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensProenkephalin-AML3822.712022-11-02doi.org/10.1038/s41589-022-01173-6
8JGBAOrphanOrphanMRGPRX1Homo sapiensConorfamide-Tx2-Gi1/β1/γ22.842024-01-10doi.org/10.1038/s41467-023-40705-z
8JGB (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensConorfamide-Tx2-2.842024-01-10doi.org/10.1038/s41467-023-40705-z
8JGFAOrphanOrphanMRGPRX1Homo sapiensBAM8-22-chim(NtGi1-Gs-CtGq)/β1/γ22.72024-01-10doi.org/10.1038/s41467-023-40705-z
8JGF (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensBAM8-22-2.72024-01-10doi.org/10.1038/s41467-023-40705-z
8JGGAOrphanOrphanMRGPRX1Homo sapiensBAM8-22-Gi1/β1/γ232024-01-10doi.org/10.1038/s41467-023-40705-z
8JGG (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensBAM8-22-32024-01-10doi.org/10.1038/s41467-023-40705-z
8DWCAOrphanOrphanMRGPRX1Homo sapiensProenkephalin-A-chim(NtGi2L-Gs-CtGq)/β1/γ22.872022-11-02doi.org/10.1038/s41589-022-01173-6
8DWC (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensProenkephalin-A-2.872022-11-02doi.org/10.1038/s41589-022-01173-6
8DWHAOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-chim(NtGi2L-Gs-CtGq)/β1/γ23.252022-11-02doi.org/10.1038/s41589-022-01173-6
8DWH (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-3.252022-11-02doi.org/10.1038/s41589-022-01173-6
8HJ5AOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-chim(NtGi1-Gs-CtGq)/β1/γ232023-05-31doi.org/10.1371/journal.pbio.3001975
8HJ5 (No Gprot) AOrphanOrphanMRGPRX1Homo sapiensPubChem 139030531-32023-05-31doi.org/10.1371/journal.pbio.3001975




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8JGB_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.