Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:E40 5.81833626
2L:L:R42 9.334528
3L:L:Q44 5.2975405
4L:L:K63 4.1425415
5L:L:P67 4.46143716
6L:L:H68 4.3475418
7L:L:E73 6.655479
8L:L:L78 5.7425487
9L:L:L86 5.21409
10L:L:N87 4.65407
11L:L:S90 4.38408
12L:L:K94 6.5254106
13L:L:L101 5406
14N:N:I52 4.3375408
15N:N:E73 5.2725119
16N:N:L86 4.8375409
17N:N:N87 5.3825407
18N:N:S90 4.7825408
19R:R:Y55 5.79407
20R:R:Y86 5.184507
21R:R:L90 5.14754129
22R:R:D94 7.5154129
23R:R:T100 3.59254137
24R:R:W112 5.96659
25R:R:F114 3.485406
26R:R:N129 4.8025408
27R:R:F130 6.7725437
28R:R:Y131 8.83407
29R:R:I134 4.8275438
30R:R:Y145 5.93667668
31R:R:V149 5.6575467
32R:R:H150 6.53466
33R:R:R184 9.91405
34R:R:T186 4.1725454
35R:R:R212 7.9025425
36R:R:F220 6.825438
37R:R:L224 4.205437
38R:R:Y231 8.352509
39R:R:T234 3.63468
40R:R:M250 4.41405
41R:R:V256 3.6925448
42R:R:F260 5.428539
43R:R:W264 5.30167638
44R:R:Y267 4.57407
45R:R:L271 6.8575406
46R:R:D274 8.475424
47R:R:M277 3.74404
48R:R:R278 7.838524
49R:R:E284 6.67423
50R:R:R289 7.815423
51R:R:Y314 6.306549
52R:R:F316 4.415406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:E40 R:R:R208 28.119110.47YesNo064
2R:R:E198 R:R:R208 29.06210.47NoNo054
3R:R:E198 R:R:R184 29.281119.77NoYes055
4R:R:C196 R:R:R184 1002.79NoYes095
5R:R:C196 R:R:W112 51.84847.84NoYes599
6R:R:T186 R:R:W112 48.42644.85YesYes549
7R:R:T186 R:R:Y188 93.27553.75YesNo041
8R:R:C119 R:R:C196 47.89697.28NoNo599
9R:R:C119 R:R:T186 47.51673.38NoYes594
10L:L:E40 L:L:R42 10.35144.65YesYes268
11L:L:E40 R:R:R212 39.58763.49YesYes265
12L:L:E40 R:R:R278 12.94556.98YesYes264
13R:R:R208 R:R:Y197 25.391218.52NoNo043
14R:R:R278 R:R:Y197 26.37913.09YesNo043
15L:L:H68 L:L:L41 48.79363.86YesNo086
16L:L:L41 R:R:Y197 49.775519.93NoNo063
17L:L:R42 R:R:R289 15.222210.66YesYes283
18L:L:K63 L:L:Q44 20.35944.07YesYes055
19L:L:H68 L:L:K63 28.66875.24YesYes185
20R:R:E284 R:R:R289 11.03965.82YesYes233
21L:L:N87 L:L:S90 11.04794.47YesYes078
22L:L:S90 L:L:V93 21.73224.85YesNo088
23L:L:I97 L:L:V93 36.32543.07NoNo078
24L:L:I97 L:L:L101 38.3772.85NoYes076
25L:L:L101 N:N:V62 47.7052.98YesNo067
26N:N:V62 N:N:V74 48.71076.41NoNo078
27N:N:L86 N:N:V74 49.71392.98YesNo098
28N:N:I52 N:N:L86 78.61844.28YesYes089
29N:N:I52 N:N:L78 84.25434.28YesNo087
30N:N:L78 N:N:N80 85.16998.24NoNo075
31N:N:G81 N:N:N80 86.99411.7NoNo075
32N:N:G81 R:R:Y188 87.87425.79NoNo071
33L:L:L86 L:L:V93 14.27348.94YesNo098
34L:L:H68 L:L:P67 18.22254.58YesYes186
35N:N:L86 N:N:V93 30.24658.94YesNo098
36N:N:S90 N:N:V93 29.19826.46YesNo088
37N:N:N87 N:N:S90 20.72664.47YesYes078
38N:N:N87 N:N:T48 11.01485.85YesNo078
39R:R:R184 R:R:V180 73.95146.54YesNo054
40R:R:E127 R:R:V180 73.966812.84NoNo044
41R:R:E127 R:R:Y131 74.06168.98NoYes047
42R:R:F130 R:R:Y131 74.45259.28YesYes077
43R:R:F130 R:R:W264 49.43810.02YesYes378
44R:R:W264 R:R:Y267 49.47352.89YesYes087
45R:R:E300 R:R:Y267 18.11593.37NoYes057
46R:R:E300 R:R:I304 15.33714.1NoNo057
47R:R:I304 R:R:Y55 12.12588.46NoYes077
48R:R:L271 R:R:R212 57.125410.93YesYes065
49R:R:L271 R:R:Y267 51.64827.03YesYes067
50R:R:H306 R:R:W264 38.47657.41NoYes098
51R:R:H306 R:R:S307 27.93432.79NoNo098
52R:R:D94 R:R:S307 28.2984.42YesNo098
53R:R:D94 R:R:N66 25.15786.73YesNo099
54R:R:A91 R:R:N66 20.77993.13NoNo089
55R:R:A91 R:R:V69 20.04433.39NoNo088
56R:R:F316 R:R:V69 19.30873.93YesNo068
57R:R:A315 R:R:F316 21.79382.77NoYes076
58R:R:A315 R:R:F321 19.02218.32NoNo078
59R:R:F321 R:R:V72 10.57895.24NoNo087
60R:R:F130 R:R:I134 25.56066.28YesYes378
61R:R:F260 R:R:I134 24.89133.77YesYes398
62R:R:F260 R:R:M227 70.827911.2YesNo098
63R:R:L137 R:R:M227 33.31795.65NoNo088
64R:R:L137 R:R:Y314 30.64459.38NoYes089
65R:R:I140 R:R:Y314 16.12716.04NoYes499
66R:R:I140 R:R:Y86 16.25276.04NoYes097
67R:R:F260 R:R:W264 50.87713.01YesYes398
68R:R:L137 R:R:L90 14.96635.54NoYes089
69R:R:D94 R:R:L90 10.31716.79YesYes1299
70R:R:F97 R:R:H306 14.35759.05NoNo069
71R:R:M227 R:R:S141 43.79144.6NoNo089
72R:R:S141 R:R:Y231 25.767913.99NoYes099
73R:R:C230 R:R:S141 18.21543.44NoNo079
74R:R:C230 R:R:Y145 16.33686.72NoYes078
75R:R:I253 R:R:Y231 21.22539.67NoYes079
76R:R:I253 R:R:L235 15.12987.14NoNo074
77R:R:L235 R:R:M250 12.822.83NoYes045
78L:L:P67 R:R:T204 12.96211.75YesNo063
79R:R:M200 R:R:T204 10.82523.01NoNo053
80R:R:V252 R:R:V256 11.20781.6NoYes078
81R:R:D274 R:R:R212 17.739210.72YesYes245
82R:R:D274 R:R:R278 12.3778.34YesYes244
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:S36 R:R:S43 6.52 0 No No 4 5 0 1
L:L:V37 R:R:G111 3.68 0 No No 1 4 0 1
L:L:V37 R:R:S193 3.23 0 No No 1 3 0 1
L:L:E40 R:R:R208 10.47 2 Yes No 6 4 0 1
L:L:E40 R:R:R212 3.49 2 Yes Yes 6 5 0 1
L:L:E40 R:R:D274 6.5 2 Yes Yes 6 4 0 1
L:L:E40 R:R:R278 6.98 2 Yes Yes 6 4 0 1
L:L:L41 R:R:Y197 19.93 0 No No 6 3 0 1
L:L:R42 R:R:D274 8.34 2 Yes Yes 8 4 0 1
L:L:R42 R:R:R278 17.06 2 Yes Yes 8 4 0 1
L:L:R42 R:R:R289 10.66 2 Yes Yes 8 3 0 1
L:L:R42 R:R:D293 5.96 2 Yes No 8 4 0 1
L:L:Q44 R:R:N191 10.56 0 Yes No 5 2 0 1
L:L:L46 R:R:E284 3.98 2 No Yes 5 3 0 1
L:L:L46 R:R:R289 3.64 2 No Yes 5 3 0 1
L:L:L49 R:R:A36 4.73 0 No No 5 5 0 1
L:L:P67 R:R:R185 2.88 1 Yes No 6 4 0 1
L:L:P67 R:R:V187 3.53 1 Yes No 6 3 0 1
L:L:P67 R:R:D199 11.27 1 Yes No 6 4 0 1
L:L:K83 R:R:P38 3.35 0 No No 4 7 0 1
L:L:K83 R:R:E40 5.4 0 No No 4 4 0 1
N:N:G81 R:R:Y188 5.79 0 No No 7 1 0 1
R:R:C39 R:R:R289 11.14 0 No Yes 8 3 2 1
R:R:R185 R:R:V187 3.92 1 No No 4 3 1 1
R:R:D199 R:R:R185 19.06 1 No No 4 4 1 1
R:R:T186 R:R:Y188 3.75 5 Yes No 4 1 2 1
R:R:P194 R:R:Y188 11.13 0 No No 5 1 2 1
R:R:N191 R:R:S190 5.96 0 No No 2 2 1 2
R:R:P194 R:R:S193 3.56 0 No No 5 3 2 1
R:R:R208 R:R:Y197 18.52 0 No No 4 3 1 1
R:R:R278 R:R:Y197 3.09 2 Yes No 4 3 1 1
R:R:E198 R:R:R208 10.47 0 No No 5 4 2 1
R:R:M200 R:R:T204 3.01 0 No No 5 3 2 1
R:R:M200 R:R:W207 6.98 0 No No 5 3 2 2
R:R:N203 R:R:N206 10.9 0 No No 4 1 1 2
R:R:M209 R:R:T275 7.53 0 No No 3 4 2 2
R:R:M209 R:R:R278 3.72 0 No Yes 3 4 2 1
R:R:L271 R:R:R212 10.93 0 Yes Yes 6 5 2 1
R:R:D274 R:R:R212 10.72 2 Yes Yes 4 5 1 1
R:R:R212 R:R:T275 6.47 2 Yes No 5 4 1 2
R:R:D274 R:R:R278 8.34 2 Yes Yes 4 4 1 1
R:R:E284 R:R:M277 5.41 2 Yes Yes 3 4 1 2
R:R:E284 R:R:Q280 11.47 2 Yes No 3 2 1 2
R:R:E284 R:R:R289 5.82 2 Yes Yes 3 3 1 1
R:R:N203 R:R:W207 2.26 0 No No 4 3 1 2
R:R:A37 R:R:P38 1.87 0 No No 7 7 2 1
R:R:G201 R:R:T204 1.82 0 No No 4 3 2 1
L:L:C85 R:R:A36 1.81 0 No No 9 5 0 1
L:L:A70 R:R:A205 1.79 0 No No 3 1 0 1
R:R:P41 R:R:V192 1.77 0 No No 4 5 2 1
L:L:P67 R:R:T204 1.75 1 Yes No 6 3 0 1
L:L:A35 R:R:S193 1.71 0 No No 3 3 0 1
L:L:A38 R:R:V192 1.7 0 No No 2 5 0 1
L:L:I75 R:R:P38 1.69 0 No No 9 7 0 1
R:R:N191 R:R:P41 1.63 0 No No 2 4 1 2
L:L:A70 R:R:N203 1.56 0 No No 3 4 0 1
R:R:A205 R:R:N206 1.56 0 No No 1 1 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XWV_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.77
Number of Linked Nodes 394
Number of Links 430
Number of Hubs 52
Number of Links mediated by Hubs 186
Number of Communities 13
Number of Nodes involved in Communities 57
Number of Links involved in Communities 69
Path Summary
Number Of Nodes in MetaPath 83
Number Of Links MetaPath 82
Number of Shortest Paths 167684
Length Of Smallest Path 3
Average Path Length 19.8152
Length of Longest Path 43
Minimum Path Strength 1.225
Average Path Strength 6.15767
Maximum Path Strength 19.225
Minimum Path Correlation 0.7
Average Path Correlation 0.952343
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 50.2526
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.3255
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like   • Interleukin 8-like chemokines
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like   • Interleukin 8-like chemokines
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainL
ProteinCXCL1
UniProtP09341
Sequence
>8XWV_nogp_Chain_L
ASVATELRC QCLQTLQGI HPKNIQSVN VKSPGPHCA QTEVIATLK 
NGRKACLNP ASPIVKKII EKMLN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainN
ProteinCXCL1
UniProtP09341
Sequence
>8XWV_nogp_Chain_N
CQCLQTLQG IHPKNIQSV NVKSPGPHC AQTEVIATL KNGRKACLN 
PASPIVKKI IEKMLNS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP25025
Sequence
>8XWV_nogp_Chain_R
DAAPCEPES LEINKYFVV IIYALVFLL SLLGNSLVM LVILYSRVG 
RSVTDVYLL NLALADLLF ALTLPIWAA SKVNGWIFG TFLCKVVSL 
LKEVNFYSG ILLLACISV DRYLAIVHA TRTLTQKRY LVKFICLSI 
WGLSLLLAL PVLLFRRTV YSSNVSPAC YEDMGNNTA NWRMLLRIL 
PQSFGFIVP LLIMLFCYG FTLRTLFKA HMGQKHRAM RVIFAVVLI 
FLLCWLPYN LVLLADTLM RTQVIQETC ERRNHIDRA LDATEILGI 
LHSCLNPLI YAFIGQKFR HGLLKILA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6LFLAProteinChemokineCXCR2Homo sapiens-PubChem 153466996-3.22020-09-02doi.org/10.1038/s41586-020-2492-5
6LFMAProteinChemokineCXCR2Homo sapiensCXCL8-Gi1/β1/γ23.52020-09-02doi.org/10.1038/s41586-020-2492-5
6LFM (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL8-3.52020-09-02doi.org/10.1038/s41586-020-2492-5
6LFOAProteinChemokineCXCR2Homo sapiensCXCL8-Gi1/β1/γ23.42020-09-02doi.org/10.1038/s41586-020-2492-5
6LFO (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL8-3.42020-09-02doi.org/10.1038/s41586-020-2492-5
8XVUAProteinChemokineCXCR2Homo sapiensCXCL2--3.092025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWAAProteinChemokineCXCR2Homo sapiensCXCL1--3.482025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWFAProteinChemokineCXCR2Homo sapiensCXCL3--3.652025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWMAProteinChemokineCXCR2Homo sapiensCXCL6--3.712025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWNAProteinChemokineCXCR2Homo sapiensCXCL8--3.292025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWSAProteinChemokineCXCR2Homo sapiensCXCL5--3.062025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWVAProteinChemokineCXCR2Homo sapiensCXCL1-Go/β1/γ23.072025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XWV (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL1-3.072025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XX3AProteinChemokineCXCR2Homo sapiensCXCL3-Go/β1/γ23.382025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XX3 (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL3-3.382025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XX6AProteinChemokineCXCR2Homo sapiensCXCL8-Go/β1/γ22.992025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XX6 (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL8-2.992025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XX7AProteinChemokineCXCR2Homo sapiensCXCL5-Go/β1/γ23.322025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XX7 (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL5-3.322025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XXHAProteinChemokineCXCR2Homo sapiensCXCL2-Go/β1/γ22.82025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XXH (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL2-2.82025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XXRAProteinChemokineCXCR2Homo sapiens--Go/β1/γ23.172025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XXR (No Gprot) AProteinChemokineCXCR2Homo sapiens--3.172025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XXXAProteinChemokineCXCR2Homo sapiensCXCL6-Go/β1/γ23.172025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XXX (No Gprot) AProteinChemokineCXCR2Homo sapiensCXCL6-3.172025-01-15doi.org/10.1016/j.molcel.2025.01.024




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XWV_nogp.zip



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