Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L33 5.6025407
2R:R:F37 5.36406
3R:R:N44 7.975409
4R:R:R54 5.6675404
5R:R:Y64 7.2225418
6R:R:N66 7.2925409
7R:R:F74 6.76417
8R:R:W91 9.3025409
9R:R:F93 9.19407
10R:R:I101 6.635405
11R:R:L109 5.6825418
12R:R:F110 9.915407
13R:R:I119 3.92519
14R:R:R123 6.91419
15R:R:R137 9.2825407
16R:R:I169 3.402541
17R:R:F178 4.265614
18R:R:F180 5.8275406
19R:R:R190 4.6425405
20R:R:R201 4.81571715
21R:R:R205 8.09167615
22R:R:F206 7.3416
23R:R:F210 8.3375419
24R:R:M214 6.9325406
25R:R:Y221 5.09667608
26R:R:K227 2.895405
27R:R:I234 4.005404
28R:R:R238 1.655407
29R:R:V246 5.475408
30R:R:F250 6.648519
31R:R:W254 6.614519
32R:R:F255 7.16406
33R:R:N285 6.825434
34R:R:F292 5.88517
35R:R:N294 7.392519
36R:R:Y302 6.478519
37R:R:F309 7.106518
38L:L:W4 4.2075410
39L:L:Y6 5.988510
40L:L:?9 11.79610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:N285 R:R:V284 10.67974.43YesNo345
2L:L:M7 R:R:V284 25.45914.56NoNo005
3L:L:M7 R:R:R205 26.75427.44NoYes005
4L:L:?9 R:R:R205 26.090123.43YesYes105
5L:L:?9 R:R:L109 89.19773.64YesYes108
6R:R:F292 R:R:L109 14.20227.31YesYes178
7R:R:F292 R:R:L33 12.61333.65YesYes077
8R:R:N294 R:R:W254 49.44449.04YesYes199
9R:R:L109 R:R:W254 1005.69YesYes189
10R:R:D71 R:R:N44 15.563616.16NoYes099
11R:R:D71 R:R:S295 15.85995.89NoNo099
12R:R:F74 R:R:S295 16.59816.61YesNo079
13R:R:F74 R:R:L109 45.62826.09YesYes178
14R:R:N44 R:R:P299 12.72836.52YesNo099
15R:R:P299 R:R:V47 12.54955.3NoNo099
16R:R:Q258 R:R:R205 12.92757.01NoYes185
17R:R:F210 R:R:Q258 11.785710.54YesNo198
18R:R:F210 R:R:M214 14.13579.95YesYes096
19R:R:F250 R:R:M214 18.95327.46YesYes096
20R:R:F250 R:R:I116 65.57778.79YesNo198
21R:R:I116 R:R:Y302 65.25078.46NoYes189
22R:R:I119 R:R:Y302 35.69954.84YesYes199
23R:R:I119 R:R:Y64 17.36443.63YesYes198
24R:R:V303 R:R:Y64 14.720713.88NoYes178
25R:R:F250 R:R:W254 48.51987.02YesYes199
26R:R:N294 R:R:N298 48.65779.54YesNo199
27R:R:N298 R:R:Y302 48.47635.81NoYes199
28R:R:R123 R:R:Y302 44.92848.23YesYes199
29R:R:R123 R:R:Y64 18.95835.14YesYes198
30R:R:F309 R:R:V50 12.27366.55YesNo087
31R:R:V50 R:R:W49 11.39753.68NoNo074
32R:R:T60 R:R:Y64 23.44896.24NoYes078
33R:R:R137 R:R:T60 21.09383.88YesNo077
34R:R:R137 R:R:V59 11.936414.38YesNo076
35R:R:L115 R:R:L67 20.88434.15NoNo089
36R:R:I119 R:R:L67 22.0672.85YesNo099
37R:R:L115 R:R:N66 17.30575.49NoYes089
38R:R:I146 R:R:N66 11.23918.5NoYes079
39R:R:F74 R:R:N108 39.51573.62YesNo078
40R:R:I101 R:R:T77 32.27417.6YesNo057
41R:R:T77 R:R:V104 34.36874.76NoNo075
42R:R:N108 R:R:V104 37.47224.43NoNo085
43R:R:I101 R:R:W91 16.88175.87YesYes059
44R:R:F93 R:R:P92 13.55335.78YesNo073
45L:L:K5 R:R:E89 12.43458.1NoNo004
46R:R:E89 R:R:Y175 11.23664.49NoNo043
47R:R:I103 R:R:V160 10.12544.61NoNo054
48L:L:?9 R:R:F110 11.543118.15YesYes007
49R:R:P213 R:R:V113 12.11783.53NoNo097
50R:R:R123 R:R:Y221 34.18739.26YesYes098
51R:R:V246 R:R:Y221 29.76586.31YesYes088
52R:R:V246 R:R:Y302 35.16055.05YesYes089
53R:R:K227 R:R:L128 11.3774.23YesNo057
54R:R:K227 R:R:V127 43.97813.04YesNo058
55R:R:I224 R:R:V127 46.17499.22NoNo088
56R:R:I224 R:R:Y221 48.35633.63NoYes088
57R:R:L212 R:R:P213 10.30934.93NoNo059
58R:R:F178 R:R:R201 39.58214.28YesYes145
59R:R:F178 R:R:F180 12.80493.22YesYes046
60L:L:W4 R:R:F178 22.63154.01YesYes104
61R:R:I195 R:R:K269 11.23142.91NoNo014
62R:R:I195 R:R:L272 14.50361.43NoNo013
63R:R:L268 R:R:L272 15.58666.92NoNo033
64R:R:L198 R:R:L268 16.65944.15NoNo043
65L:L:W4 R:R:L198 17.70425.69YesNo004
66R:R:I228 R:R:I234 21.82692.94NoYes084
67R:R:I228 R:R:M233 24.06452.92NoNo083
68R:R:K231 R:R:M233 26.2975.76NoNo053
69R:R:K227 R:R:K231 28.52442.87YesNo055
70R:R:I234 R:R:P239 15.08343.39YesNo047
71R:R:P239 R:R:R238 10.56222.88NoYes077
72L:L:K5 R:R:V284 13.44354.55NoNo305
73L:L:?9 R:R:R201 49.88899.59YesYes105
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F74 R:R:L109 6.09 1 Yes Yes 7 8 2 1
R:R:F292 R:R:F74 10.72 1 Yes Yes 7 7 2 2
R:R:M85 R:R:N285 11.22 0 No Yes 6 4 2 1
R:R:E89 R:R:Y175 4.49 0 No No 4 3 1 2
L:L:K5 R:R:E89 8.1 3 No No 0 4 0 1
R:R:H102 R:R:L164 9 1 No No 6 5 1 1
L:L:Y6 R:R:H102 8.71 1 Yes No 0 6 0 1
R:R:D106 R:R:V160 7.3 0 No No 5 4 1 2
L:L:?9 R:R:D106 10.71 1 Yes No 0 5 0 1
R:R:L109 R:R:W254 5.69 1 Yes Yes 8 9 1 2
R:R:F292 R:R:L109 7.31 1 Yes Yes 7 8 2 1
L:L:?9 R:R:L109 3.64 1 Yes Yes 0 8 0 1
R:R:F110 R:R:F114 4.29 0 Yes No 7 6 1 2
R:R:F110 R:R:L156 15.83 0 Yes No 7 5 1 2
L:L:?9 R:R:F110 18.15 1 Yes Yes 0 7 0 1
R:R:R201 R:R:V160 3.92 1 Yes No 5 4 1 2
L:L:Y6 R:R:L164 4.69 1 Yes No 0 5 0 1
R:R:F178 R:R:T177 5.19 1 Yes No 4 3 1 1
L:L:W4 R:R:T177 3.64 1 Yes No 0 3 0 1
L:L:Y6 R:R:T177 6.24 1 Yes No 0 3 0 1
R:R:F178 R:R:M197 3.73 1 Yes No 4 1 1 2
R:R:F178 R:R:R201 4.28 1 Yes Yes 4 5 1 1
L:L:W4 R:R:F178 4.01 1 Yes Yes 0 4 0 1
L:L:Y6 R:R:F178 5.16 1 Yes Yes 0 4 0 1
R:R:L198 R:R:L268 4.15 0 No No 4 3 1 2
L:L:W4 R:R:L198 5.69 1 Yes No 0 4 0 1
R:R:R201 R:R:R205 6.4 1 Yes Yes 5 5 1 1
L:L:Y6 R:R:R201 5.14 1 Yes Yes 0 5 0 1
L:L:?9 R:R:R201 9.59 1 Yes Yes 0 5 0 1
R:R:Q258 R:R:R205 7.01 1 No Yes 8 5 2 1
L:L:M7 R:R:R205 7.44 0 No Yes 0 5 0 1
L:L:?9 R:R:R205 23.43 1 Yes Yes 0 5 0 1
R:R:D281 R:R:M271 4.16 0 No No 4 1 2 1
R:R:N285 R:R:V284 4.43 3 Yes No 4 5 1 1
L:L:K5 R:R:V284 4.55 3 No No 0 5 0 1
L:L:M7 R:R:V284 4.56 0 No No 0 5 0 1
L:L:K5 R:R:N285 8.39 3 No Yes 0 4 0 1
L:L:W4 R:R:M271 3.49 1 Yes No 0 1 0 1
R:R:N285 R:R:P29 3.26 3 Yes No 4 5 1 2
R:R:F178 R:R:F180 3.22 1 Yes Yes 4 6 1 2
R:R:P159 R:R:R201 2.88 0 No Yes 8 5 2 1
R:R:A261 R:R:R205 2.77 0 No Yes 5 5 2 1
R:R:G264 R:R:M271 1.75 0 No No 4 1 2 1
R:R:G202 R:R:R201 1.5 1 No Yes 4 5 2 1
R:R:G202 R:R:R205 1.5 1 No Yes 4 5 2 1
R:R:A153 R:R:F110 1.39 0 No Yes 8 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6OMM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 286
Number of Links 309
Number of Hubs 40
Number of Links mediated by Hubs 147
Number of Communities 4
Number of Nodes involved in Communities 38
Number of Links involved in Communities 52
Path Summary
Number Of Nodes in MetaPath 74
Number Of Links MetaPath 73
Number of Shortest Paths 76207
Length Of Smallest Path 3
Average Path Length 14.4822
Length of Longest Path 31
Minimum Path Strength 1.18333
Average Path Strength 6.24097
Maximum Path Strength 20.79
Minimum Path Correlation 0.7
Average Path Correlation 0.92827
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 47.3716
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.1309
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeQXV
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeQXV
NameD-methioninamide
Synonyms
Identifier
FormulaC5 H12 N2 O S
Molecular Weight148.227
SMILES
PubChem11571827
Formal Charge0
Total Atoms21
Total Chiral Atoms1
Total Bonds20
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25090
Sequence
>6OMM_nogp_Chain_R
GYTVLRILP LVVLGVTFV LGVLGNGLV IWVAGFRMT RTVTTICYL 
NLALADFSF TATLPFLIV SMAMGEKWP FGWFLCKLI HIVVDINLF 
GSVFLIGFI ALDRCICVL HPVWAQNHR TVSLAMKVI VGPWILALV 
LTLPVFLFL TTVTIPNGD TYCTFNFAS WGGTPEERL KVAITMLTA 
RGIIRFVIG FSLPMSIVA ICYGLIAAK IHKKGMIKS SRPLRVLTA 
VVASFFICW FPFQLVALL GTVWLKEML FYGKYKIID ILVNPTSSL 
AFFNSCLNP MLYVFVGQD FRERLIHSL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6OMMAPeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-Gi1/β1/γ23.172020-02-26doi.org/10.1038/s41467-020-14728-9
6OMM (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-3.172020-02-26doi.org/10.1038/s41467-020-14728-9
6LW5APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVm--2.82020-03-25doi.org/10.1038/s41467-020-15009-1
7T6SAPeptideFormylpeptideFPR2-ALXHomo sapiensPubChem 24776341-Gi1/β1/γ232022-03-30doi.org/10.1038/s41467-022-28586-0
7T6S (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensPubChem 24776341-32022-03-30doi.org/10.1038/s41467-022-28586-0
7T6UAPeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-Gi1/β1/γ22.92022-03-30doi.org/10.1038/s41467-022-28586-0
7T6U (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-2.92022-03-30doi.org/10.1038/s41467-022-28586-0
7T6VAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi1/β1/γ23.12022-03-30doi.org/10.1038/s41467-022-28586-0
7T6V (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-3.12022-03-30doi.org/10.1038/s41467-022-28586-0
7WVVAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi2/β1/γ22.92022-04-13doi.org/10.1038/s41467-022-29361-x
7WVV (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-2.92022-04-13doi.org/10.1038/s41467-022-29361-x
7WVWAPeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-Gi2/β1/γ23.12022-04-13doi.org/10.1038/s41467-022-29361-x
7WVW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-3.12022-04-13doi.org/10.1038/s41467-022-29361-x
7WVXAPeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-Gi2/β1/γ22.82022-04-13doi.org/10.1038/s41467-022-29361-x
7WVX (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-2.82022-04-13doi.org/10.1038/s41467-022-29361-x
7WVYAPeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-Gi2/β1/γ232022-04-13doi.org/10.1038/s41467-022-29361-x
7WVY (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-32022-04-13doi.org/10.1038/s41467-022-29361-x
8Y62APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-Gi1/β1/γ23.22025-02-05doi.org/10.1126/science.ado4188
8Y62 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-3.22025-02-05doi.org/10.1126/science.ado4188
8Y63APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-Gi1/β1/γ23.22025-02-05doi.org/10.1126/science.ado4188
8Y63 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-3.22025-02-05doi.org/10.1126/science.ado4188
9JHJAPeptideFormylpeptideFPR2-ALXHomo sapiensC18:0 Ceramide-Gi1/β1/γ23.22025-03-19doi.org/10.1126/science.ado4188
9JHJ (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC18:0 Ceramide-3.22025-03-19doi.org/10.1126/science.ado4188




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6OMM_nogp.zip



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