Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.2225820
2L:L:F3 5.785400
3R:R:L33 5.0475437
4R:R:F37 5.405406
5R:R:V47 6.93459
6R:R:I48 3.2225407
7R:R:L67 4.5125419
8R:R:D71 4.79519
9R:R:F74 6.59857737
10R:R:L78 3.854538
11R:R:W91 7.422589
12R:R:F93 6.1575407
13R:R:W95 5.5625404
14R:R:I101 6.255405
15R:R:D106 8.532525
16R:R:F110 9.7775427
17R:R:F114 3.55506
18R:R:I116 7.215418
19R:R:R123 7.025419
20R:R:W132 6.19405
21R:R:R137 9.615477
22R:R:I169 3.8625441
23R:R:Y175 5.565443
24R:R:F180 4.41406
25R:R:R201 6.264525
26R:R:R205 7.95167625
27R:R:F206 7.43426
28R:R:F210 8.56429
29R:R:M214 4.445406
30R:R:Y221 6.422518
31R:R:V246 5.475418
32R:R:W254 6.495609
33R:R:F255 8.4625406
34R:R:Q258 7.845428
35R:R:L268 5.062503
36R:R:F292 7.445437
37R:R:N298 5.8675419
38R:R:Y302 6.66619
39R:R:F309 8.2325458
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:L2 36.1143.77YesNo000
2L:L:I4 L:L:L2 41.1014.28NoNo000
3L:L:?1 R:R:R205 39.941322.03YesYes205
4L:L:F3 R:R:R205 47.64633.21YesYes005
5L:L:F3 L:L:I5 15.71257.54YesNo000
6L:L:F3 R:R:G264 28.2444.52YesNo004
7L:L:I4 R:R:H102 46.78465.3NoNo006
8L:L:?1 R:R:R201 17.449711.02YesYes205
9R:R:F178 R:R:R201 30.12798.55NoYes045
10L:L:I5 R:R:L268 11.85775.71NoYes003
11R:R:G264 R:R:I280 24.73763.53NoNo044
12R:R:I279 R:R:I280 22.69331.47NoNo034
13R:R:I279 R:R:I282 18.57732.94NoNo032
14R:R:I282 R:R:Y22 14.6174.84NoNo022
15L:L:?1 R:R:L109 51.00618.79YesNo008
16R:R:F74 R:R:L109 50.13988.53YesNo078
17R:R:F74 R:R:L78 30.77884.87YesYes378
18R:R:L33 R:R:L78 18.36644.15YesYes378
19R:R:L33 R:R:M85 21.59784.24YesNo076
20R:R:M85 R:R:N285 19.20985.61NoNo064
21R:R:N285 R:R:P29 16.496313.03NoNo045
22R:R:L28 R:R:P29 11.03273.28NoNo055
23R:R:F292 R:R:F74 19.452716.08YesYes377
24R:R:F292 R:R:L33 16.63846.09YesYes377
25R:R:I82 R:R:L33 11.03275.71NoYes077
26R:R:L78 R:R:T36 11.6562.95YesNo387
27L:L:?1 R:R:W254 94.34396.2YesYes009
28R:R:N294 R:R:W254 16.62016.78NoYes099
29R:R:N294 R:R:N298 14.40166.81NoYes099
30R:R:D71 R:R:N44 10.69816.73YesNo199
31R:R:F250 R:R:W254 84.97510.02NoYes099
32R:R:F250 R:R:I116 99.03293.77NoYes098
33R:R:I116 R:R:Y302 10010.88YesYes189
34R:R:R123 R:R:Y302 45.08416.17YesYes199
35R:R:R123 R:R:Y64 50.56614.12YesNo098
36R:R:V303 R:R:Y64 49.42028.83NoNo078
37R:R:V303 R:R:V47 21.107411.22NoYes579
38R:R:A68 R:R:V47 11.34443.39NoYes089
39R:R:F309 R:R:V303 26.95157.87YesNo587
40R:R:F309 R:R:V50 25.104313.11YesNo087
41R:R:R312 R:R:V50 18.99892.62NoNo057
42R:R:M55 R:R:R312 17.44512.48NoNo055
43R:R:M55 R:R:T61 15.88673.01NoNo057
44R:R:T58 R:R:T61 14.31916.28NoNo077
45R:R:T58 R:R:T60 11.15643.14NoNo077
46R:R:I116 R:R:L67 19.2745.71YesYes189
47R:R:L115 R:R:L67 23.0054.15NoYes089
48R:R:L115 R:R:N66 20.74535.49NoNo089
49R:R:I146 R:R:N66 13.911211.33NoNo079
50R:R:F74 R:R:N108 15.77213.62YesNo078
51R:R:C98 R:R:H102 33.35017.37NoNo096
52R:R:C98 R:R:W91 25.631413.06NoYes899
53R:R:N108 R:R:V104 13.16864.43NoNo085
54R:R:T77 R:R:V104 10.59274.76NoNo075
55R:R:S84 R:R:W91 18.43974.94NoYes059
56R:R:E89 R:R:S84 16.79424.31NoNo045
57R:R:E89 R:R:Y175 13.47573.37NoYes043
58R:R:H102 R:R:L164 12.61865.14NoNo065
59R:R:K99 R:R:L164 11.09697.05NoNo075
60L:L:?1 R:R:F110 20.965316.57YesYes207
61R:R:F110 R:R:F114 12.38943.22YesYes076
62R:R:Y221 R:R:Y302 45.88175.96YesYes189
63R:R:L243 R:R:Y221 50.40567.03NoYes088
64R:R:I224 R:R:L243 47.88472.85NoNo088
65R:R:I224 R:R:V127 46.523412.29NoNo088
66R:R:K227 R:R:V127 45.32254.55NoNo058
67R:R:K227 R:R:L128 29.59162.82NoNo057
68R:R:L128 R:R:L223 28.11116.92NoNo073
69R:R:C124 R:R:L223 25.1184.76NoNo083
70R:R:C124 R:R:C220 23.60547.28NoNo087
71R:R:C220 R:R:L121 17.46343.17NoNo077
72R:R:I125 R:R:L121 15.9052.85NoNo057
73R:R:I125 R:R:W132 14.33743.52NoYes055
74R:R:F178 R:R:M197 27.37774.98NoNo041
75R:R:F180 R:R:M197 16.39093.73YesNo061
76R:R:F180 R:R:R190 11.6244.28YesNo065
77R:R:G184 R:R:R190 10.1161.5NoNo035
78R:R:Q258 R:R:R205 33.46018.18YesYes285
79R:R:F210 R:R:Q258 24.150916.4YesYes298
80R:R:F210 R:R:F255 29.07378.57YesYes096
81R:R:F255 R:R:L259 30.74214.87YesNo065
82R:R:L259 R:R:L263 28.21192.77NoNo055
83R:R:L263 R:R:W267 25.67266.83NoNo053
84R:R:W267 R:R:Y277 20.566525.08NoNo033
85R:R:K276 R:R:Y277 15.42383.58NoNo013
86R:R:K276 R:R:Y274 12.83867.17NoNo015
87R:R:Q258 R:R:W254 28.71613.29YesYes089
88R:R:F250 R:R:M214 18.8113.73NoYes096
89R:R:K227 R:R:K231 16.08387.18NoNo055
90R:R:K231 R:R:M233 12.93952.88NoNo053
91R:R:I228 R:R:M233 11.35354.37NoNo083
92L:L:I4 R:R:F178 15.56585.02NoNo004
93R:R:R201 R:R:R205 13.00364.26YesYes255
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D106 14.77 2 Yes Yes 0 5 0 1
L:L:?1 R:R:L109 8.79 2 Yes No 0 8 0 1
L:L:?1 R:R:F110 16.57 2 Yes Yes 0 7 0 1
L:L:?1 R:R:R201 11.02 2 Yes Yes 0 5 0 1
L:L:?1 R:R:R205 22.03 2 Yes Yes 0 5 0 1
L:L:?1 R:R:W254 6.2 2 Yes Yes 0 9 0 1
L:L:?1 R:R:F257 6.63 2 Yes No 0 7 0 1
L:L:L2 R:R:V105 5.96 0 No No 0 6 0 1
L:L:F3 R:R:R205 3.21 0 Yes Yes 0 5 0 1
L:L:F3 R:R:G264 4.52 0 Yes No 0 4 0 1
L:L:F3 R:R:V284 7.87 0 Yes No 0 5 0 1
L:L:I4 R:R:H102 5.3 0 No No 0 6 0 1
L:L:I4 R:R:F178 5.02 0 No No 0 4 0 1
L:L:I5 R:R:T177 7.6 0 No No 0 3 0 1
L:L:I5 R:R:L268 5.71 0 No Yes 0 3 0 1
R:R:F74 R:R:V105 5.24 3 Yes No 7 6 2 1
R:R:F74 R:R:L109 8.53 3 Yes No 7 8 2 1
R:R:C98 R:R:H102 7.37 8 No No 9 6 2 1
R:R:H102 R:R:L164 5.14 0 No No 6 5 1 2
R:R:D106 R:R:F110 8.36 2 Yes Yes 5 7 1 1
R:R:D106 R:R:T157 10.12 2 Yes No 5 7 1 2
R:R:D106 R:R:V160 5.84 2 Yes No 5 4 1 2
R:R:D106 R:R:R201 3.57 2 Yes Yes 5 5 1 1
R:R:F110 R:R:F114 3.22 2 Yes Yes 7 6 1 2
R:R:F110 R:R:L156 10.96 2 Yes No 7 5 1 2
R:R:V113 R:R:W254 4.9 0 No Yes 7 9 2 1
R:R:R201 R:R:V160 3.92 2 Yes No 5 4 1 2
R:R:F178 R:R:M197 4.98 0 No No 4 1 1 2
R:R:F178 R:R:R201 8.55 0 No Yes 4 5 1 1
R:R:I195 R:R:L268 4.28 0 No Yes 1 3 2 1
R:R:L198 R:R:L268 5.54 0 No Yes 4 3 2 1
R:R:R201 R:R:R205 4.26 2 Yes Yes 5 5 1 1
R:R:G202 R:R:R205 4.5 0 No Yes 4 5 2 1
R:R:Q258 R:R:R205 8.18 2 Yes Yes 8 5 2 1
R:R:A261 R:R:R205 5.53 0 No Yes 5 5 2 1
R:R:F250 R:R:W254 10.02 0 No Yes 9 9 2 1
R:R:Q258 R:R:W254 3.29 2 Yes Yes 8 9 2 1
R:R:A291 R:R:W254 7.78 0 No Yes 8 9 2 1
R:R:N294 R:R:W254 6.78 0 No Yes 9 9 2 1
R:R:F257 R:R:T287 9.08 0 No No 7 7 1 2
R:R:A291 R:R:F257 5.55 0 No No 8 7 2 1
R:R:G264 R:R:M271 3.49 0 No No 4 1 1 2
R:R:G264 R:R:I280 3.53 0 No No 4 4 1 2
R:R:L268 R:R:M271 4.24 0 Yes No 3 1 1 2
R:R:L268 R:R:L272 5.54 0 Yes No 3 3 1 2
R:R:L81 R:R:V105 2.98 0 No No 6 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7WVV_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.21
Number of Linked Nodes 287
Number of Links 318
Number of Hubs 39
Number of Links mediated by Hubs 139
Number of Communities 8
Number of Nodes involved in Communities 44
Number of Links involved in Communities 57
Path Summary
Number Of Nodes in MetaPath 94
Number Of Links MetaPath 93
Number of Shortest Paths 56681
Length Of Smallest Path 3
Average Path Length 13.5166
Length of Longest Path 31
Minimum Path Strength 1.305
Average Path Strength 6.49008
Maximum Path Strength 19.3
Minimum Path Correlation 0.7
Average Path Correlation 0.932445
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 53.1169
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.2098
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeFME
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeFME
NameN-Formylmethionine
Synonyms
  • N-Formylmethionine
  • Formyl-methionine
  • (2S)-2-(formylamino)-4-(methylthio)butanoic acid
  • L-N-Formylmethionine
  • N-formyl-L-methionine
Identifier
FormulaC6 H11 N O3 S
Molecular Weight177.221
SMILES
PubChem439750
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds21
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25090
Sequence
>7WVV_nogp_Chain_R
SAGYTVLRI LPLVVLGVT FVLGVLGNG LVIWVAGFR MTRTVTTIC 
YLNLALADF SFTATLPFL IVSMAMGEK WPFGWFLCK LIHIVVDIN 
LFGSVFLIG FIALDRCIC VLHPVWAQN HRTVSLAMK VIVGPWILA 
LVLTLPVFL FLTTVTIPN GDTYCTFNF ASWGGTPEE RLKVAITML 
TARGIIRFV IGFLLPMSI VAICYGLIA AKIHKKGMI KSSRPLRVL 
TAVVASFFI CWFPFQLVA LLGTVWLKE MLFYGKYKI IDILVNPTS 
SLAFFNSCL NPMLYVFVG QDFRERLIH S


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8Y63APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-Gi1/β1/γ23.22025-02-05To be published
8Y63 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-3.22025-02-05To be published
8Y62APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-Gi1/β1/γ23.22025-02-05To be published
8Y62 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-3.22025-02-05To be published
7WVYAPeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-Gi2/β1/γ232022-04-1310.1038/s41467-022-29361-x
7WVY (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-32022-04-1310.1038/s41467-022-29361-x
7WVXAPeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-Gi2/β1/γ22.82022-04-1310.1038/s41467-022-29361-x
7WVX (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-2.82022-04-1310.1038/s41467-022-29361-x
7WVWAPeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-Gi2/β1/γ23.12022-04-1310.1038/s41467-022-29361-x
7WVW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-3.12022-04-1310.1038/s41467-022-29361-x
7WVVAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi2/β1/γ22.92022-04-1310.1038/s41467-022-29361-x
7WVV (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-2.92022-04-1310.1038/s41467-022-29361-x
7T6VAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi1/β1/γ23.12022-03-3010.1038/s41467-022-28586-0
7T6V (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-3.12022-03-3010.1038/s41467-022-28586-0
7T6UAPeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-Gi1/β1/γ22.92022-03-3010.1038/s41467-022-28586-0
7T6U (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-2.92022-03-3010.1038/s41467-022-28586-0
7T6SAPeptideFormylpeptideFPR2-ALXHomo sapiensPubChem 24776341-Gi1/β1/γ232022-03-3010.1038/s41467-022-28586-0
7T6S (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensPubChem 24776341-32022-03-3010.1038/s41467-022-28586-0
6LW5APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVm--2.82020-03-2510.1038/s41467-020-15009-1
6OMMAPeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-Gi1/β1/γ23.172020-02-2610.1038/s41467-020-14728-9
6OMM (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-3.172020-02-2610.1038/s41467-020-14728-9




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7WVV_nogp.zip



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