Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.5421030
2R:R:L33 5.5825407
3R:R:V47 4.2825429
4R:R:V50 4.41427
5R:R:G52 1.6675404
6R:R:C63 2.3525407
7R:R:D71 4.98509
8R:R:F74 9.2125457
9R:R:L78 5.404558
10R:R:F93 4.0625487
11R:R:N108 5.695408
12R:R:I116 6.124518
13R:R:R123 5.88419
14R:R:L128 3.5625407
15R:R:R137 7.1325407
16R:R:W150 2.8325409
17R:R:L164 5.0625405
18R:R:Y175 9.7375433
19R:R:I208 2.99405
20R:R:P213 3.44409
21R:R:C220 3.08407
22R:R:Y221 5.98857718
23R:R:F250 3.845419
24R:R:W254 5.00286719
25R:R:F255 6.515406
26R:R:F257 4.646517
27R:R:Q258 7.535418
28R:R:F273 4.7925405
29R:R:I282 3.21442
30R:R:F292 4.63833657
31R:R:N298 7.2175419
32R:R:L301 2.5825498
33R:R:Y302 6.774519
34R:R:F304 3.5825407
35R:R:F309 6.046528
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R205 96.5269.41YesNo005
2R:R:Q258 R:R:R205 1004.67YesNo085
3R:R:Q258 R:R:W254 88.26444.38YesYes189
4R:R:L109 R:R:W254 56.70743.42NoYes089
5R:R:F292 R:R:L109 55.36592.44YesNo078
6R:R:F292 R:R:L33 61.83274.87YesYes077
7R:R:L33 R:R:S289 40.14717.51YesNo075
8R:R:P29 R:R:S289 34.52223.56NoNo055
9R:R:L28 R:R:P29 28.86024.93NoNo055
10R:R:L25 R:R:L28 14.54345.54NoNo035
11R:R:F257 R:R:Q258 26.8485.86YesYes178
12R:R:F257 R:R:S288 27.13026.61YesNo076
13R:R:F292 R:R:S288 25.88582.64YesNo076
14R:R:I282 R:R:L25 11.65232.85YesNo023
15R:R:I27 R:R:L28 11.65232.85NoNo065
16R:R:L33 R:R:M85 11.17594.24YesNo076
17R:R:F292 R:R:L78 17.87863.65YesYes578
18R:R:L78 R:R:T75 17.24952.95YesNo087
19R:R:G40 R:R:T75 13.01691.82NoNo087
20R:R:G40 R:R:L39 10.1861.71NoNo085
21R:R:F250 R:R:W254 48.29314.01YesYes199
22R:R:F250 R:R:I116 99.22753.77YesYes198
23R:R:I116 R:R:Y302 94.338110.88YesYes189
24R:R:R123 R:R:Y302 96.06356.17YesYes199
25R:R:R123 R:R:Y64 68.03595.14YesNo098
26R:R:V303 R:R:Y64 65.17257.57NoNo078
27R:R:F309 R:R:V303 34.36497.87YesNo287
28R:R:F304 R:R:F309 10.57916.43YesYes078
29R:R:N294 R:R:W254 51.23979.04NoYes099
30R:R:N294 R:R:N298 50.9769.54NoYes099
31R:R:N298 R:R:Y302 72.57388.14YesYes199
32R:R:D71 R:R:N298 29.97962.69YesYes099
33R:R:V303 R:R:V47 29.27656.41NoYes279
34R:R:A51 R:R:V47 28.33751.7NoYes079
35R:R:A51 R:R:G52 22.74491.95NoYes074
36R:R:I119 R:R:Y302 25.82573.63NoYes199
37R:R:C63 R:R:I119 33.27783.27YesNo079
38R:R:C63 R:R:V59 11.08341.71YesNo076
39R:R:C63 R:R:F118 18.76212.79YesNo077
40R:R:F118 R:R:I146 13.90975.02NoNo077
41R:R:F292 R:R:F74 35.798911.79YesYes577
42R:R:F74 R:R:V105 29.01752.62YesNo076
43R:R:T77 R:R:V105 27.42624.76NoNo076
44R:R:T77 R:R:V104 13.43797.93NoNo075
45R:R:N108 R:R:V104 12.14734.43YesNo085
46R:R:F74 R:R:S295 25.43716.61YesNo079
47R:R:D71 R:R:S295 26.08014.42YesNo099
48R:R:I101 R:R:T77 14.46487.6NoNo057
49R:R:F80 R:R:I101 12.68856.28NoNo065
50R:R:F80 R:R:F93 10.89832.14NoYes067
51L:L:?1 R:R:Y175 19.506914.67YesYes303
52R:R:D173 R:R:Y175 11.14353.45NoYes033
53L:L:?1 R:R:R201 25.5255.79YesNo005
54R:R:F178 R:R:R201 19.09524.28NoNo045
55R:R:F178 R:R:L164 17.19864.87NoYes045
56R:R:F114 R:R:P213 11.3842.89NoYes069
57R:R:P213 R:R:V113 21.95863.53YesNo097
58R:R:R123 R:R:Y221 48.63087.2YesYes198
59R:R:A120 R:R:Y221 62.60994NoYes098
60R:R:V246 R:R:Y302 47.34945.05NoYes089
61R:R:V246 R:R:Y221 40.077710.09NoYes088
62R:R:A120 R:R:C220 59.61241.81NoYes097
63R:R:C124 R:R:C220 49.88447.28NoYes087
64R:R:C124 R:R:L128 46.62323.17NoYes087
65R:R:K227 R:R:L128 13.4985.64NoYes057
66R:R:H129 R:R:L128 23.53591.29NoYes067
67R:R:H129 R:R:P130 20.20081.53NoNo068
68R:R:P130 R:R:V131 16.85631.77NoNo085
69R:R:N135 R:R:V131 13.50261.48NoNo045
70R:R:H136 R:R:N135 10.13975.1NoNo034
71R:R:F210 R:R:Q258 31.339615.23NoYes098
72R:R:F210 R:R:F255 51.46176.43NoYes096
73R:R:F255 R:R:L259 68.31342.44YesNo065
74R:R:L259 R:R:L263 66.04682.77NoNo055
75R:R:L263 R:R:W267 63.77097.97NoNo053
76R:R:W267 R:R:Y277 52.25288.68NoNo033
77R:R:K276 R:R:Y277 49.921415.53NoNo013
78R:R:E270 R:R:K276 47.58078.1NoNo021
79R:R:E270 R:R:K269 45.23084.05NoNo024
80R:R:F273 R:R:K269 35.8963.72YesNo054
81R:R:F273 R:R:L272 29.04069.74YesNo053
82R:R:L268 R:R:L272 26.61212.77NoNo033
83R:R:L198 R:R:L268 24.1652.77NoNo043
84R:R:L198 R:R:M197 21.95394.24NoNo041
85R:R:F180 R:R:M197 19.48844.98NoNo061
86R:R:F163 R:R:F180 14.788631.08NoNo056
87L:L:?1 R:R:N179 26.19118.18YesNo003
88R:R:A181 R:R:N179 24.31771.56NoNo053
89R:R:A181 R:R:R190 22.15282.77NoNo055
90R:R:P187 R:R:R190 15.602712.97NoNo055
91R:R:P187 R:R:T186 13.40091.75NoNo056
92R:R:V266 R:R:W267 10.04263.68NoNo043
93R:R:F210 R:R:M214 22.77272.49NoNo096
94R:R:F251 R:R:M214 22.82828.71NoNo066
95R:R:F251 R:R:F255 21.926212.86NoYes066
96R:R:K227 R:R:K231 10.13975.75NoNo055
97R:R:F309 R:R:G306 23.52211.51YesNo088
98R:R:G306 R:R:V305 19.57171.84NoNo087
99R:R:R238 R:R:V305 15.82021.31NoNo077
100R:R:F250 R:R:M214 45.49454.98YesNo096
101R:R:F250 R:R:V113 14.87192.62YesNo197
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:E89 8.68 3 Yes No 0 4 0 1
L:L:?1 R:R:D106 4.04 3 Yes No 0 5 0 1
L:L:?1 R:R:F110 2.9 3 Yes No 0 7 0 1
L:L:?1 R:R:P170 2.94 3 Yes No 0 3 0 1
L:L:?1 R:R:Y175 14.67 3 Yes Yes 0 3 0 1
L:L:?1 R:R:T177 7.03 3 Yes No 0 3 0 1
L:L:?1 R:R:N179 8.18 3 Yes No 0 3 0 1
L:L:?1 R:R:R201 5.79 3 Yes No 0 5 0 1
L:L:?1 R:R:R205 9.41 3 Yes No 0 5 0 1
R:R:D106 R:R:F110 14.33 3 No No 5 7 1 1
R:R:D106 R:R:T157 8.67 3 No No 5 7 1 2
R:R:F110 R:R:L156 8.53 3 No No 7 5 1 2
R:R:I169 R:R:P170 3.39 0 No No 1 3 2 1
R:R:I169 R:R:Y175 12.09 0 No Yes 1 3 2 1
R:R:D173 R:R:Y175 3.45 0 No Yes 3 3 2 1
R:R:T177 R:R:Y175 8.74 3 No Yes 3 3 1 1
R:R:F178 R:R:R201 4.28 0 No No 4 5 2 1
R:R:G202 R:R:R201 3 0 No No 4 5 2 1
R:R:Q258 R:R:R205 4.67 1 Yes No 8 5 2 1
R:R:A261 R:R:R205 4.15 0 No No 5 5 2 1
L:L:?1 R:R:V167 1.78 3 Yes No 0 1 0 1
R:R:E89 R:R:G88 1.64 0 No No 4 3 1 2
R:R:T165 R:R:V167 1.59 0 No No 4 1 2 1
R:R:A181 R:R:N179 1.56 0 No No 5 3 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JHJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 273
Number of Links 301
Number of Hubs 35
Number of Links mediated by Hubs 140
Number of Communities 9
Number of Nodes involved in Communities 43
Number of Links involved in Communities 50
Path Summary
Number Of Nodes in MetaPath 102
Number Of Links MetaPath 101
Number of Shortest Paths 67095
Length Of Smallest Path 3
Average Path Length 14.4599
Length of Longest Path 36
Minimum Path Strength 1.315
Average Path Strength 5.47726
Maximum Path Strength 18.03
Minimum Path Correlation 0.7
Average Path Correlation 0.93057
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 46.8262
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.2079
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code18C
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code18C
NameN-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE
SynonymsC18-CERAMIDE; N-STEAROYL-D-ERYTHRO-SPHINGOSINE; (2S,3R,4E)-2-STEAROYLAMINOOCTADEC-4-ENE-1,3-DIOL; (2S,3R,4E)-2-STEAROYLAMINO-1,3-OCTADEC-4-ENEDIOL
Identifier
FormulaC36 H71 N O3
Molecular Weight565.954
SMILES
PubChem5283565
Formal Charge0
Total Atoms111
Total Chiral Atoms2
Total Bonds110
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25090
Sequence
>9JHJ_nogp_Chain_R
VLRILPLVV LGVTFVLGV LGNGLVIWV AGFRMTRTV TTICYLNLA 
LADFSFTAT LPFLIVSMA MGEKWPFGW FLCKLIHIV VDINLFGSV 
FLIGFIALD RCICVLHPV WAQNHRTVS LAMKVIVGP WILALVLTL 
PVFLFLTTV TIPNGDTYT FNFASWGGT PEERLKVAI TMLTARGII 
RFVIGFSLP MSIVAICYG LIAAKIHKK GMIKSSRPL RVLTAVVAS 
FFICWFPFQ LVALLGTVW LKEMLFYGK YKIIDILVN PTSSLAFFN 
SCLNPMLYV FVGQDFRER LIHSL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6OMMAPeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-Gi1/β1/γ23.172020-02-26doi.org/10.1038/s41467-020-14728-9
6OMM (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-3.172020-02-26doi.org/10.1038/s41467-020-14728-9
6LW5APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVm--2.82020-03-25doi.org/10.1038/s41467-020-15009-1
7T6SAPeptideFormylpeptideFPR2-ALXHomo sapiensTC-FPR 43-Gi1/β1/γ232022-03-30doi.org/10.1038/s41467-022-28586-0
7T6S (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensTC-FPR 43-32022-03-30doi.org/10.1038/s41467-022-28586-0
7T6UAPeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-Gi1/β1/γ22.92022-03-30doi.org/10.1038/s41467-022-28586-0
7T6U (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-2.92022-03-30doi.org/10.1038/s41467-022-28586-0
7T6VAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi1/β1/γ23.12022-03-30doi.org/10.1038/s41467-022-28586-0
7T6V (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-3.12022-03-30doi.org/10.1038/s41467-022-28586-0
7WVVAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi2/β1/γ22.92022-04-13doi.org/10.1038/s41467-022-29361-x
7WVV (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-2.92022-04-13doi.org/10.1038/s41467-022-29361-x
7WVWAPeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-Gi2/β1/γ23.12022-04-13doi.org/10.1038/s41467-022-29361-x
7WVW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-3.12022-04-13doi.org/10.1038/s41467-022-29361-x
7WVXAPeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-Gi2/β1/γ22.82022-04-13doi.org/10.1038/s41467-022-29361-x
7WVX (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-2.82022-04-13doi.org/10.1038/s41467-022-29361-x
7WVYAPeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-Gi2/β1/γ232022-04-13doi.org/10.1038/s41467-022-29361-x
7WVY (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-32022-04-13doi.org/10.1038/s41467-022-29361-x
8Y62APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-Gi1/β1/γ23.22025-02-05doi.org/10.1126/science.ado4188
8Y62 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-3.22025-02-05doi.org/10.1126/science.ado4188
8Y63APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-Gi1/β1/γ23.22025-02-05doi.org/10.1126/science.ado4188
8Y63 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-3.22025-02-05doi.org/10.1126/science.ado4188
9JHJAPeptideFormylpeptideFPR2-ALXHomo sapiensC18:0 Ceramide-Gi1/β1/γ23.22025-03-19doi.org/10.1126/science.ado4188
9JHJ (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC18:0 Ceramide-3.22025-03-19doi.org/10.1126/science.ado4188
8ZBWAPeptideFormylpeptideFPR2-ALXHomo sapiensQuin-C1-Gi2/β1/γ22.582025-09-10doi.org/10.1038/s41401-025-01525-7
8ZBW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensQuin-C1-2.582025-09-10doi.org/10.1038/s41401-025-01525-7




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