Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.245600
2R:R:M55 3.755405
3R:R:I62 5.0075407
4R:R:Y64 6.17518
5R:R:D71 7.314559
6R:R:F74 9.6527
7R:R:L78 8.7475408
8R:R:F80 10.3325486
9R:R:W91 11.202589
10R:R:W95 9.045494
11R:R:I119 5.2419
12R:R:R123 9.225419
13R:R:W132 6.8475405
14R:R:R137 10.62477
15R:R:I169 5.524531
16R:R:Y175 11.2825433
17R:R:F180 5.7565116
18R:R:R201 5.9654105
19R:R:R205 8.7525405
20R:R:F210 7.985449
21R:R:P213 5.0975409
22R:R:I216 3.825406
23R:R:Y221 7.15857718
24R:R:R238 2.8725407
25R:R:F250 6.46409
26R:R:W254 5.816529
27R:R:F255 7.855446
28R:R:F257 5.205627
29R:R:Q258 7.3175408
30R:R:F273 5.8925405
31R:R:F292 7.035427
32R:R:F293 5.24415
33R:R:N298 8.25459
34R:R:L301 4.708518
35R:R:Y302 6.6719
36R:R:F309 7.1775408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F110 70.31283.01YesNo007
2R:R:F110 R:R:L156 66.09313.4NoNo075
3R:R:I204 R:R:L156 64.647812.85NoNo045
4R:R:I204 R:R:I208 63.19162.94NoNo045
5R:R:I208 R:R:V207 61.72439.22NoNo054
6R:R:I203 R:R:V207 60.2461.54NoNo044
7R:R:I203 R:R:T265 58.75673.04NoNo044
8R:R:T199 R:R:T265 57.25633.14NoNo034
9R:R:L268 R:R:T199 55.71745.9NoNo033
10R:R:L268 R:R:M271 54.19492.83NoNo031
11R:R:D281 R:R:M271 23.40456.93NoNo041
12R:R:D281 R:R:K278 21.66142.77NoNo041
13R:R:I282 R:R:K278 19.90732.91NoNo021
14R:R:I282 R:R:L283 18.14225.71NoNo026
15R:R:L25 R:R:L283 16.3662.77NoNo036
16R:R:L25 R:R:P286 10.97143.28NoNo036
17L:L:?1 R:R:F257 97.2534.01YesYes007
18R:R:F257 R:R:S288 31.37516.61YesNo076
19R:R:F292 R:R:S288 30.07346.61YesNo076
20R:R:F292 R:R:L33 11.67746.09YesNo077
21R:R:F257 R:R:W254 88.75284.01YesYes279
22R:R:L109 R:R:W254 44.9066.83NoYes289
23R:R:F74 R:R:L109 41.40887.31YesNo278
24R:R:F74 R:R:L78 19.708817.05YesYes078
25R:R:F292 R:R:F74 25.594411.79YesYes277
26R:R:F250 R:R:W254 75.79024.01YesYes099
27R:R:F250 R:R:I116 86.29828.79YesNo098
28R:R:I116 R:R:Y302 10010.88NoYes089
29R:R:L301 R:R:Y302 23.49275.86YesYes189
30R:R:L297 R:R:L301 18.85934.15NoYes168
31R:R:F293 R:R:L297 17.07216.09YesNo156
32R:R:N294 R:R:W254 14.42449.04NoYes099
33R:R:N294 R:R:N298 14.209310.9NoYes099
34R:R:D71 R:R:N298 21.47396.73YesYes599
35R:R:D71 R:R:N44 22.53855.39YesNo099
36R:R:N44 R:R:P299 20.50866.52NoNo099
37R:R:Y302 R:R:Y64 71.39394.96YesYes198
38R:R:T60 R:R:Y64 44.88947.49NoYes078
39R:R:R137 R:R:T60 43.21253.88YesNo077
40R:R:R137 R:R:V59 24.298120.92YesNo076
41R:R:A142 R:R:V59 22.49995.09NoNo076
42R:R:A142 R:R:I62 20.68514.87NoYes077
43R:R:I62 R:R:R57 11.44576.26YesNo076
44R:R:V303 R:R:Y64 40.62557.57NoYes078
45R:R:F309 R:R:V303 36.78647.87YesNo087
46R:R:F309 R:R:V50 42.74379.18YesNo087
47R:R:R312 R:R:V50 36.21272.62NoNo057
48R:R:M55 R:R:R312 29.99064.96YesNo055
49R:R:D308 R:R:M55 23.5815.54NoYes065
50R:R:L67 R:R:N298 15.38426.87NoYes599
51R:R:L115 R:R:L67 21.69455.54NoNo089
52R:R:L115 R:R:W150 14.19273.42NoNo089
53R:R:F74 R:R:S295 30.32716.61YesNo079
54R:R:F74 R:R:V105 71.17885.24YesNo076
55R:R:T77 R:R:V105 68.94487.93NoNo076
56R:R:T77 R:R:V104 17.64027.93NoNo075
57R:R:N108 R:R:V104 15.15254.43NoNo085
58R:R:I101 R:R:T77 50.67579.12NoNo057
59R:R:F80 R:R:I101 48.342423.86YesNo065
60R:R:F80 R:R:W91 36.4836.01YesYes869
61L:L:?1 R:R:Y175 19.86327.72YesYes003
62R:R:C98 R:R:W91 24.849722.2NoYes099
63R:R:C98 R:R:H102 19.90735.9NoNo096
64R:R:H102 R:R:L164 17.43623.86NoNo065
65R:R:K99 R:R:L164 15.14155.64NoNo075
66R:R:K99 R:R:W95 10.121922.05NoYes974
67L:L:?1 R:R:R205 14.887715.01YesYes005
68R:R:R201 R:R:R205 14.20937.46YesYes055
69R:R:D106 R:R:R201 10.34814.76NoYes1055
70R:R:F250 R:R:P213 28.46824.33YesYes099
71R:R:L212 R:R:P213 23.95064.93NoYes059
72R:R:I216 R:R:L212 22.42264.28YesNo065
73R:R:Y221 R:R:Y302 16.02963.97YesYes189
74R:R:C126 R:R:R137 16.97286.96NoYes787
75R:R:I216 R:R:L121 17.77262.85YesNo067
76R:R:C220 R:R:L121 16.20063.17NoNo077
77R:R:C124 R:R:C220 14.61757.28NoNo087
78R:R:A133 R:R:C126 15.17463.61NoNo058
79R:R:A133 R:R:W132 13.31571.3NoYes055
80R:R:C124 R:R:L128 13.02333.17NoNo087
81R:R:L272 R:R:M271 31.78881.41NoNo031
82R:R:F273 R:R:L272 30.10098.53YesNo053
83R:R:F273 R:R:L191 19.73632.44YesNo051
84R:R:A194 R:R:L191 18.10361.58NoNo031
85R:R:A194 R:R:F180 16.31098.32NoYes036
86R:R:I169 R:R:Y175 11.04863.63YesYes313
87R:R:Q258 R:R:R205 17.12177.01YesYes085
88R:R:F257 R:R:Q258 26.53765.86YesYes078
89R:R:F206 R:R:Q258 18.41255.86NoYes068
90R:R:F206 R:R:L262 13.20549.74NoNo065
91R:R:F210 R:R:Q258 17.55210.54YesYes098
92R:R:F210 R:R:M214 15.78697.46YesNo496
93R:R:F250 R:R:M214 23.32738.71YesNo096
94R:R:F210 R:R:F255 12.75869.65YesYes496
95R:R:F257 R:R:T287 11.31895.19YesNo077
96R:R:D308 R:R:E311 21.95382.6NoNo064
97R:R:E311 R:R:Q307 20.31552.55NoNo045
98R:R:Q307 R:R:R238 18.65524.67NoYes057
99R:R:L262 R:R:V266 10.58522.98NoNo054
100R:R:F304 R:R:P299 15.92484.33NoNo079
101R:R:F255 R:R:L259 16.67492.44YesNo065
102R:R:L259 R:R:L263 12.52142.77NoNo055
103R:R:D71 R:R:S295 29.56598.83YesNo099
104R:R:F304 R:R:F309 15.17467.5NoYes078
105R:R:I116 R:R:N298 24.20988.5NoYes089
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y175 7.72 0 Yes Yes 0 3 0 1
L:L:?1 R:R:T177 9.71 0 Yes No 0 3 0 1
L:L:?1 R:R:F178 4.01 0 Yes No 0 4 0 1
L:L:?1 R:R:R205 15.01 0 Yes Yes 0 5 0 1
L:L:?1 R:R:F257 4.01 0 Yes Yes 0 7 0 1
R:R:D173 R:R:K90 15.21 3 No No 3 4 2 2
R:R:K90 R:R:Y175 11.94 3 No Yes 4 3 2 1
R:R:F110 R:R:F114 4.29 0 No No 7 6 1 2
R:R:F110 R:R:L156 13.4 0 No No 7 5 1 2
R:R:D173 R:R:I169 9.8 3 No Yes 3 1 2 2
R:R:I169 R:R:Y175 3.63 3 Yes Yes 1 3 2 1
R:R:D173 R:R:Y175 21.84 3 No Yes 3 3 2 1
R:R:F178 R:R:L198 3.65 0 No No 4 4 1 2
R:R:F178 R:R:R201 6.41 0 No Yes 4 5 1 2
R:R:R201 R:R:R205 7.46 10 Yes Yes 5 5 2 1
R:R:Q258 R:R:R205 7.01 0 Yes Yes 8 5 2 1
R:R:A261 R:R:R205 5.53 0 No Yes 5 5 2 1
R:R:F257 R:R:W254 4.01 2 Yes Yes 7 9 1 2
R:R:A291 R:R:W254 5.19 2 No Yes 8 9 2 2
R:R:F257 R:R:Q258 5.86 2 Yes Yes 7 8 1 2
R:R:F257 R:R:T287 5.19 2 Yes No 7 7 1 2
R:R:F257 R:R:S288 6.61 2 Yes No 7 6 1 2
R:R:A291 R:R:F257 5.55 2 No Yes 8 7 2 1
R:R:T177 R:R:V167 3.17 0 No No 3 1 1 2
L:L:?1 R:R:F110 3.01 0 Yes No 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8Y63_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.42
Number of Linked Nodes 278
Number of Links 306
Number of Hubs 36
Number of Links mediated by Hubs 137
Number of Communities 11
Number of Nodes involved in Communities 49
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 106
Number Of Links MetaPath 105
Number of Shortest Paths 50960
Length Of Smallest Path 3
Average Path Length 14.7014
Length of Longest Path 38
Minimum Path Strength 1.44
Average Path Strength 6.54547
Maximum Path Strength 21.12
Minimum Path Correlation 0.7
Average Path Correlation 0.932123
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.77778
Average % Of Corr. Nodes 51.9837
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.9429
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25090
Sequence
>8Y63_nogp_Chain_R
VLRILPLVV LGVTFVLGV LGNGLVIWV AGFRMTRTV TTICYLNLA 
LADFSFTAT LPFLIVSMA MGEKWPFGW FLCKLIHIV VDINLFGSV 
FLIGFIALD RCICVLHPV WAQNHRTVS LAMKVIVGP WILALVLTL 
PVFLFLTTV TIPNGDTYC TFNFASWGT PEERLKVAI TMLTARIIR 
FVIGFSLPM SIVAICYGL IAAKIHKKG MIKSSRPLR VLTAVVASF 
FICWFPFQL VALLGTVWL KEMLFYGYK IIDILVNPT SSLAFFNSC 
LNPMLYVFV GQDFRERLI HSL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6OMMAPeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-Gi1/β1/γ23.172020-02-26doi.org/10.1038/s41467-020-14728-9
6OMM (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-3.172020-02-26doi.org/10.1038/s41467-020-14728-9
6LW5APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVm--2.82020-03-25doi.org/10.1038/s41467-020-15009-1
7T6SAPeptideFormylpeptideFPR2-ALXHomo sapiensTC-FPR 43-Gi1/β1/γ232022-03-30doi.org/10.1038/s41467-022-28586-0
7T6S (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensTC-FPR 43-32022-03-30doi.org/10.1038/s41467-022-28586-0
7T6UAPeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-Gi1/β1/γ22.92022-03-30doi.org/10.1038/s41467-022-28586-0
7T6U (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-2.92022-03-30doi.org/10.1038/s41467-022-28586-0
7T6VAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi1/β1/γ23.12022-03-30doi.org/10.1038/s41467-022-28586-0
7T6V (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-3.12022-03-30doi.org/10.1038/s41467-022-28586-0
7WVVAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi2/β1/γ22.92022-04-13doi.org/10.1038/s41467-022-29361-x
7WVV (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-2.92022-04-13doi.org/10.1038/s41467-022-29361-x
7WVWAPeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-Gi2/β1/γ23.12022-04-13doi.org/10.1038/s41467-022-29361-x
7WVW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-3.12022-04-13doi.org/10.1038/s41467-022-29361-x
7WVXAPeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-Gi2/β1/γ22.82022-04-13doi.org/10.1038/s41467-022-29361-x
7WVX (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-2.82022-04-13doi.org/10.1038/s41467-022-29361-x
7WVYAPeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-Gi2/β1/γ232022-04-13doi.org/10.1038/s41467-022-29361-x
7WVY (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-32022-04-13doi.org/10.1038/s41467-022-29361-x
8Y62APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-Gi1/β1/γ23.22025-02-05doi.org/10.1126/science.ado4188
8Y62 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-3.22025-02-05doi.org/10.1126/science.ado4188
8Y63APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-Gi1/β1/γ23.22025-02-05doi.org/10.1126/science.ado4188
8Y63 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-3.22025-02-05doi.org/10.1126/science.ado4188
9JHJAPeptideFormylpeptideFPR2-ALXHomo sapiensC18:0 Ceramide-Gi1/β1/γ23.22025-03-19doi.org/10.1126/science.ado4188
9JHJ (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC18:0 Ceramide-3.22025-03-19doi.org/10.1126/science.ado4188
8ZBWAPeptideFormylpeptideFPR2-ALXHomo sapiensQuin-C1-Gi2/β1/γ22.582025-09-10doi.org/10.1038/s41401-025-01525-7
8ZBW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensQuin-C1-2.582025-09-10doi.org/10.1038/s41401-025-01525-7




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8Y63_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.