Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 4.77857720
2R:R:P29 3.864545
3R:R:L30 3.79445
4R:R:W49 7.9675404
5R:R:M55 2.415405
6R:R:L67 4.10667619
7R:R:D71 7.048519
8R:R:W91 10.292529
9R:R:F93 8.735427
10R:R:C98 5.025429
11R:R:K99 7.1675477
12R:R:I107 3.6775405
13R:R:L115 2.67408
14R:R:I119 4.1419
15R:R:R123 6.1375419
16R:R:L128 3.21407
17R:R:L156 3.09405
18R:R:V160 4.17484
19R:R:F163 7.2375425
20R:R:T174 3.84405
21R:R:Y175 10.365423
22R:R:C176 4.7775429
23R:R:F178 5.16524
24R:R:F180 5.405426
25R:R:I195 1.855401
26R:R:R201 4.645425
27R:R:R205 5.518525
28R:R:Y221 5.105818
29R:R:I224 3.1825418
30R:R:R238 3.1675407
31R:R:W254 4.93167609
32R:R:F255 7.5025406
33R:R:F257 3.8525407
34R:R:Q258 6.38408
35R:R:I280 4.035404
36R:R:I282 7.512532
37R:R:F292 5.4325407
38R:R:L301 2.5825418
39R:R:Y302 4.96833619
40R:R:F309 6.298558
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F257 77.3053.21YesYes007
2R:R:F257 R:R:S288 11.34752.64YesNo076
3R:R:N285 R:R:S288 13.93132.98NoNo046
4R:R:M85 R:R:N285 12.891611.22NoNo064
5L:L:?1 R:R:R201 24.31464.27YesYes205
6R:R:F178 R:R:R201 44.65578.55YesYes245
7R:R:F178 R:R:L198 30.74493.65YesNo044
8R:R:L198 R:R:L268 29.00872.77NoNo043
9R:R:L268 R:R:L272 11.31664.15NoNo033
10R:R:F257 R:R:W254 75.22564.01YesYes079
11R:R:N294 R:R:W254 99.75297.91NoYes099
12R:R:N294 R:R:N298 10012.26NoNo099
13R:R:I116 R:R:N298 56.74435.66NoNo089
14R:R:I116 R:R:Y302 31.71268.46NoYes189
15R:R:V246 R:R:Y302 11.28235.05NoYes189
16R:R:L301 R:R:V246 12.79212.98YesNo188
17R:R:D71 R:R:N298 43.47185.39YesNo099
18R:R:D71 R:R:N44 24.60635.39YesNo099
19R:R:N44 R:R:P299 15.47886.52NoNo099
20R:R:M300 R:R:P299 14.54893.35NoNo079
21R:R:F304 R:R:M300 12.92938.71NoNo077
22R:R:F304 R:R:F309 12.4496.43NoYes078
23R:R:F309 R:R:V50 14.16129.18YesNo087
24R:R:R123 R:R:Y302 17.17396.17YesYes199
25R:R:R123 R:R:Y64 24.19115.14YesNo098
26R:R:V303 R:R:Y64 21.88526.31NoNo078
27R:R:F309 R:R:V303 18.2969.18YesNo587
28R:R:D71 R:R:L67 35.36016.79YesYes199
29R:R:L115 R:R:L67 53.35762.77YesYes089
30R:R:L115 R:R:W150 35.6933.42YesNo089
31R:R:L69 R:R:W150 32.53612.28NoNo069
32R:R:I48 R:R:L69 30.94741.43NoNo076
33R:R:I116 R:R:L67 24.79845.71NoYes189
34R:R:I48 R:R:L65 27.74942.85NoNo075
35R:R:A51 R:R:F309 14.07892.77NoYes078
36R:R:G52 R:R:L65 26.14015.13NoNo045
37R:R:A51 R:R:T61 12.41461.68NoNo077
38R:R:G52 R:R:R57 24.52391.5NoNo046
39R:R:R57 R:R:V139 22.90091.31NoNo063
40R:R:I62 R:R:V139 21.2711.54NoNo073
41R:R:A142 R:R:I62 17.99061.62NoNo077
42R:R:A142 R:R:V59 16.34015.09NoNo076
43R:R:I119 R:R:L67 13.05292.85YesYes199
44R:R:C63 R:R:I119 15.25244.91NoYes079
45R:R:I146 R:R:L115 11.55682.85NoYes078
46R:R:C63 R:R:F118 13.20392.79NoNo077
47L:L:?1 R:R:F110 22.50285.35YesNo007
48R:R:D106 R:R:F110 14.13728.36NoNo057
49L:L:?1 R:R:Y175 38.79835.15YesYes203
50R:R:C176 R:R:Y175 37.24055.38YesYes293
51R:R:C176 R:R:F93 20.2934.19YesYes297
52R:R:F93 R:R:W91 15.406814.03YesYes279
53R:R:T174 R:R:W91 18.75586.06YesYes059
54R:R:C176 R:R:C98 15.88373.64YesYes299
55R:R:C98 R:R:W91 17.36956.53YesYes299
56R:R:T166 R:R:W91 10.589220.62NoYes059
57R:R:V113 R:R:W254 19.29793.68NoYes079
58R:R:P213 R:R:V113 18.18963.53NoNo097
59R:R:Y221 R:R:Y302 13.85242.98YesYes189
60R:R:L212 R:R:P213 16.28183.28NoNo059
61R:R:I216 R:R:L212 15.78772.85NoNo065
62R:R:C220 R:R:I216 15.34161.64NoNo076
63R:R:C124 R:R:C220 15.00537.28NoNo087
64R:R:C124 R:R:L128 20.54353.17NoYes087
65R:R:R137 R:R:V59 14.67599.15NoNo076
66R:R:C126 R:R:R137 11.68036.96NoNo687
67R:R:A133 R:R:C126 10.20833.61NoNo058
68R:R:I224 R:R:Y221 12.34943.63YesYes188
69R:R:F118 R:R:V145 17.53422.62NoNo075
70R:R:L141 R:R:V145 10.70242.98NoNo035
71R:R:I195 R:R:L268 17.15681.43YesNo013
72R:R:I195 R:R:L191 11.50191.43YesNo011
73R:R:Q258 R:R:R205 29.39647.01YesYes085
74R:R:F210 R:R:Q258 18.584210.54NoYes098
75R:R:F210 R:R:F255 16.84117.5NoYes096
76R:R:K227 R:R:L128 15.57494.23NoYes057
77R:R:K227 R:R:K231 14.6451.44NoNo055
78R:R:K231 R:R:M233 13.62594.32NoNo053
79R:R:I228 R:R:M233 10.52744.37NoNo083
80R:R:F255 R:R:L259 14.38088.53YesNo065
81R:R:L259 R:R:L263 13.24162.77NoNo055
82R:R:I280 R:R:L263 12.16422.85YesNo045
83R:R:Q258 R:R:W254 39.89293.29YesYes089
84R:R:R201 R:R:R205 21.95044.26YesYes255
85R:R:L67 R:R:Y302 12.373.52YesYes199
86R:R:C124 R:R:I224 10.91171.64NoYes088
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:E89 3.49 2 Yes No 0 4 0 1
L:L:?1 R:R:F110 5.35 2 Yes No 0 7 0 1
L:L:?1 R:R:Y175 5.15 2 Yes Yes 0 3 0 1
L:L:?1 R:R:R201 4.27 2 Yes Yes 0 5 0 1
L:L:?1 R:R:R205 10.67 2 Yes Yes 0 5 0 1
L:L:?1 R:R:F257 3.21 2 Yes Yes 0 7 0 1
R:R:E89 R:R:Y175 24.69 2 No Yes 4 3 1 1
R:R:D106 R:R:F110 8.36 8 No No 5 7 2 1
R:R:C176 R:R:Y175 5.38 2 Yes Yes 9 3 2 1
R:R:T177 R:R:Y175 6.24 0 No Yes 3 3 2 1
R:R:F178 R:R:R201 8.55 2 Yes Yes 4 5 2 1
R:R:R201 R:R:R205 4.26 2 Yes Yes 5 5 1 1
R:R:Q258 R:R:R205 7.01 0 Yes Yes 8 5 2 1
R:R:A261 R:R:R205 4.15 0 No Yes 5 5 2 1
R:R:F257 R:R:W254 4.01 0 Yes Yes 7 9 1 2
R:R:Q258 R:R:W254 3.29 0 Yes Yes 8 9 2 2
R:R:A291 R:R:F257 5.55 0 No Yes 8 7 2 1
R:R:F257 R:R:S288 2.64 0 Yes No 7 6 1 2
R:R:F110 R:R:L156 2.44 0 No Yes 7 5 1 2
R:R:G202 R:R:R201 1.5 2 No Yes 4 5 2 1
R:R:G202 R:R:R205 1.5 2 No Yes 4 5 2 1
L:L:?1 R:R:V284 1.31 2 Yes No 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8Y62_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.77
Number of Linked Nodes 275
Number of Links 310
Number of Hubs 40
Number of Links mediated by Hubs 150
Number of Communities 8
Number of Nodes involved in Communities 54
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 87
Number Of Links MetaPath 86
Number of Shortest Paths 57486
Length Of Smallest Path 3
Average Path Length 14.5216
Length of Longest Path 36
Minimum Path Strength 1.405
Average Path Strength 5.22807
Maximum Path Strength 17.325
Minimum Path Correlation 0.7
Average Path Correlation 0.931517
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 49.1232
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.6287
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development
Gene OntologyBiological Process• multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • nucleoplasm   • Golgi apparatus   • endomembrane system   • ciliary basal body   • molecular transducer activity   • signaling receptor activity   • amide binding   • amyloid-beta binding   • peptide binding   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • complement receptor activity   • immune receptor activity   • cargo receptor activity   • scavenger receptor binding   • peptide receptor activity   • N-formyl peptide receptor activity   • G protein-coupled peptide receptor activity   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • reactive oxygen species metabolic process   • regulation of superoxide metabolic process   • positive regulation of reactive oxygen species metabolic process   • superoxide metabolic process   • superoxide anion generation   • positive regulation of superoxide anion generation   • regulation of superoxide anion generation   • regulation of reactive oxygen species metabolic process   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of signal transduction   • intracellular signal transduction   • positive regulation of response to stimulus   • positive regulation of ERK1 and ERK2 cascade   • regulation of intracellular signal transduction   • intracellular signaling cassette   • regulation of signaling   • positive regulation of MAPK cascade   • positive regulation of intracellular signal transduction   • regulation of MAPK cascade   • regulation of response to stimulus   • MAPK cascade   • regulation of cell communication   • ERK1 and ERK2 cascade   • regulation of ERK1 and ERK2 cascade   • positive regulation of signaling   • immune response-regulating cell surface receptor signaling pathway   • complement receptor mediated signaling pathway   • immune response-activating signaling pathway   • immune response-regulating signaling pathway   • positive regulation of immune response   • regulation of immune system process   • positive regulation of immune system process   • cell surface receptor signaling pathway   • immune response-activating cell surface receptor signaling pathway   • immune response   • regulation of immune response   • activation of immune response   • regulation of defense response   • regulation of response to external stimulus   • negative regulation of inflammatory response   • defense response   • negative regulation of response to stimulus   • negative regulation of biological process   • response to external stimulus   • regulation of inflammatory response   • response to stress   • negative regulation of response to external stimulus   • regulation of response to stress   • negative regulation of defense response   • inflammatory response   • positive chemotaxis   • chemotaxis   • taxis   • locomotion   • import into cell   • positive regulation of cellular component organization   • transport   • vesicle-mediated transport   • positive regulation of endocytosis   • phagocytosis   • regulation of endocytosis   • regulation of transport   • regulation of phagocytosis   • regulation of vesicle-mediated transport   • establishment of localization   • positive regulation of phagocytosis   • positive regulation of transport   • endocytosis   • regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction   • positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction   • phosphatidylinositol 3-kinase/protein kinase B signal transduction   • calcium-mediated signaling   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to bacterium   • response to external biotic stimulus   • multicellular organismal process   • cellular developmental process   • astrocyte differentiation   • cell development   • astrocyte activation   • glial cell development   • multicellular organism development   • neurogenesis   • astrocyte development   • gliogenesis   • cell differentiation   • anatomical structure development   • system development   • developmental process   • cell activation   • nervous system development   • central nervous system development   • glial cell differentiation   • glial cell activation   • neuroinflammatory response   • positive regulation of monocyte chemotaxis   • positive regulation of locomotion   • regulation of cell motility   • positive regulation of chemotaxis   • positive regulation of cell migration   • regulation of monocyte chemotaxis   • positive regulation of response to external stimulus   • positive regulation of cell motility   • regulation of cell migration   • myeloid leukocyte migration   • positive regulation of mononuclear cell migration   • regulation of mononuclear cell migration   • cell chemotaxis   • regulation of leukocyte chemotaxis   • regulation of leukocyte migration   • positive regulation of leukocyte migration   • positive regulation of leukocyte chemotaxis   • regulation of chemotaxis   • monocyte chemotaxis   • regulation of locomotion   • leukocyte chemotaxis   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell adhesion   • positive regulation of response to biotic stimulus   • regulation of response to biotic stimulus   • innate immune response   • positive regulation of innate immune response   • regulation of innate immune response   • defense response to symbiont   • positive regulation of defense response   • cellular response to amyloid-beta   • response to amyloid-beta   • myeloid leukocyte activation   • leukocyte activation   • macrophage activation   • leukocyte activation involved in inflammatory response   • microglial cell activation   • receptor-mediated endocytosis   • tertiary granule membrane   • intracellular vesicle   • tertiary granule   • cytoplasmic vesicle membrane   • vesicle membrane   • cytoplasmic vesicle   • secretory granule   • secretory vesicle   • secretory granule membrane   • specific granule membrane   • specific granule   • ficolin-1-rich granule membrane   • ficolin-1-rich granule
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code16C
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code16C
NameN-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE
SynonymsC16-CERAMIDE; N-PALMITOYL-D-ERYTHRO-SPHINGOSINE; (2S,3R,4E)-2-PALMITOYLAMINOOCTADEC-4-ENE-1,3-DIOL; (2S,3R,4E)-2-PALMITOYLAMINO-1,3-OCTADEC-4-ENEDIOL
Identifier
FormulaC34 H67 N O3
Molecular Weight537.901
SMILES
PubChem5283564
Formal Charge0
Total Atoms105
Total Chiral Atoms2
Total Bonds104
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25090
Sequence
>8Y62_nogp_Chain_R
VLRILPLVV LGVTFVLGV LGNGLVIWV AGFRMTRTV TTICYLNLA 
LADFSFTAT LPFLIVSMA MGEKWPFGW FLCKLIHIV VDINLFGSV 
FLIGFIALD RCICVLHPV WAQNHRTVS LAMKVIVGP WILALVLTL 
PVFLFLTTV TIPNTYCTF NFASWGGTP EERLKVAIT MLTARGIIR 
FVIGFSLPM SIVAICYGL IAAKIHKKG MIKSSRPLR VLTAVVASF 
FICWFPFQL VALLGTVWL KEMLFYGKY KIIDILVNP TSSLAFFNS 
CLNPMLYVF VGQDFRERL IHSL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8Y63APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-Gi1/β1/γ23.22025-02-05To be published
8Y63 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC20:0 Ceramide-3.22025-02-05To be published
8Y62APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-Gi1/β1/γ23.22025-02-05To be published
8Y62 (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensC16:0 Ceramide-3.22025-02-05To be published
7WVYAPeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-Gi2/β1/γ232022-04-1310.1038/s41467-022-29361-x
7WVY (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensAmyloid-β42-32022-04-1310.1038/s41467-022-29361-x
7WVXAPeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-Gi2/β1/γ22.82022-04-1310.1038/s41467-022-29361-x
7WVX (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensHumanin-2.82022-04-1310.1038/s41467-022-29361-x
7WVWAPeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-Gi2/β1/γ23.12022-04-1310.1038/s41467-022-29361-x
7WVW (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMYFINILTL-3.12022-04-1310.1038/s41467-022-29361-x
7WVVAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi2/β1/γ22.92022-04-1310.1038/s41467-022-29361-x
7WVV (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-2.92022-04-1310.1038/s41467-022-29361-x
7T6VAPeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-Gi1/β1/γ23.12022-03-3010.1038/s41467-022-28586-0
7T6V (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensfMLFII-3.12022-03-3010.1038/s41467-022-28586-0
7T6UAPeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-Gi1/β1/γ22.92022-03-3010.1038/s41467-022-28586-0
7T6U (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensCGEN-855A-2.92022-03-3010.1038/s41467-022-28586-0
7T6SAPeptideFormylpeptideFPR2-ALXHomo sapiensPubChem 24776341-Gi1/β1/γ232022-03-3010.1038/s41467-022-28586-0
7T6S (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensPubChem 24776341-32022-03-3010.1038/s41467-022-28586-0
6LW5APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVm--2.82020-03-2510.1038/s41467-020-15009-1
6OMMAPeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-Gi1/β1/γ23.172020-02-2610.1038/s41467-020-14728-9
6OMM (No Gprot) APeptideFormylpeptideFPR2-ALXHomo sapiensWKYMVX-3.172020-02-2610.1038/s41467-020-14728-9




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