Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.676431410
2R:R:H28 4.458518
3R:R:Y29 5.04417
4R:R:F52 6.5325406
5R:R:F76 6.786508
6R:R:Y81 8.824539
7R:R:F83 5.62508
8R:R:D91 4.88333629
9R:R:Y98 7.214516
10R:R:W117 4.57833619
11R:R:F118 5.265406
12R:R:R120 6.536516
13R:R:E121 4.862515
14R:R:R142 5.0075449
15R:R:R159 3.758565
16R:R:L160 4.7175407
17R:R:W168 4.88559
18R:R:V194 5.348514
19R:R:L195 5.052513
20R:R:L197 5.09414
21R:R:Y198 7.46414
22R:R:Y202 9.7725417
23R:R:F210 6.1725417
24R:R:Y221 4.26509
25R:R:W269 7.06618
26R:R:L290 5.214513
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:K34 11.53423.12YesNo006
2R:R:K34 R:R:Y29 10.27795.97NoYes067
3L:L:?1 R:R:E121 37.37556.84YesYes105
4R:R:E121 R:R:W117 22.43053.27YesYes159
5R:R:L197 R:R:W117 16.3644.56YesYes149
6R:R:H28 R:R:L197 16.91736.43YesYes184
7L:L:?1 R:R:V194 30.2744.39YesYes104
8R:R:L290 R:R:V194 30.88597.45YesYes134
9R:R:L290 R:R:T193 14.52192.95YesNo035
10L:L:?1 R:R:M124 23.00985.21YesNo006
11R:R:M124 R:R:Y98 23.26375.99NoYes066
12R:R:V298 R:R:Y98 36.47075.05NoYes056
13R:R:F52 R:R:V298 30.521414.42YesNo065
14R:R:F52 R:R:L102 15.42023.65YesNo065
15R:R:L102 R:R:S49 12.36094.5NoNo055
16L:L:?1 R:R:L297 52.49635.1YesNo105
17R:R:L297 R:R:Y98 19.83347.03NoYes156
18R:R:L297 R:R:V301 31.62792.98NoNo157
19R:R:S304 R:R:V301 35.59853.23NoNo097
20R:R:D91 R:R:S304 24.82595.89YesNo099
21R:R:D91 R:R:N63 11.29349.42YesNo099
22L:L:?1 R:R:W269 94.38917.55YesYes108
23R:R:F265 R:R:W269 96.10755.01NoYes098
24R:R:F265 R:R:L135 1006.09NoNo099
25R:R:L135 R:R:Y311 99.52483.52NoNo099
26R:R:R142 R:R:Y311 77.45886.17YesNo499
27R:R:R142 R:R:Y221 67.49985.14YesYes099
28R:R:V261 R:R:Y221 20.6475.05NoYes089
29R:R:I310 R:R:V261 15.69361.54NoNo088
30R:R:I310 R:R:V264 14.00124.61NoNo087
31R:R:T306 R:R:V264 10.57741.59NoNo057
32R:R:M80 R:R:R142 33.56774.96NoYes089
33R:R:I84 R:R:M80 35.35772.92NoNo088
34R:R:I70 R:R:I84 33.79552.94NoNo078
35R:R:I70 R:R:Y81 32.34393.63NoYes079
36R:R:F76 R:R:Y81 22.664818.57YesYes089
37R:R:F76 R:R:T73 14.2037.78YesNo086
38R:R:I325 R:R:T73 12.4651.52NoNo066
39R:R:I138 R:R:Y311 21.64299.67NoNo489
40R:R:F83 R:R:I138 30.9513.77YesNo088
41R:R:F83 R:R:L160 20.47788.53YesYes087
42R:R:F83 R:R:L163 17.0934.87YesNo086
43R:R:S131 R:R:S304 13.81891.63NoNo099
44R:R:S131 R:R:S90 13.14851.63NoNo098
45R:R:A130 R:R:S90 12.79053.42NoNo078
46R:R:N86 R:R:W168 14.18346.78NoYes099
47R:R:I164 R:R:L160 14.29414.28NoYes077
48R:R:E121 R:R:Y198 13.1946.73YesYes154
49R:R:F118 R:R:Y198 15.9935.16YesYes064
50L:L:?1 R:R:L195 15.89534.08YesYes103
51R:R:L195 R:R:Y198 15.41378.21YesYes134
52L:L:?1 R:R:F125 18.362327.83YesNo105
53R:R:F125 R:R:Y202 15.283510.32NoYes157
54L:L:?1 R:R:V132 13.79295.49YesNo007
55R:R:L213 R:R:V132 12.11352.98NoNo087
56R:R:I217 R:R:Y221 43.50062.42NoYes089
57R:R:I217 R:R:L136 42.04264.28NoNo087
58R:R:I140 R:R:L136 39.08745.71NoNo067
59R:R:I140 R:R:L220 37.59032.85NoNo067
60R:R:L220 R:R:Y143 36.08023.52NoNo078
61R:R:R223 R:R:Y143 33.020912.35NoNo058
62R:R:L163 R:R:R159 15.42022.43NoYes065
63R:R:R223 R:R:S226 15.34863.95NoNo053
64R:R:R229 R:R:S226 13.65622.64NoNo053
65R:R:R229 R:R:Y225 10.336511.32NoNo056
66R:R:L227 R:R:R223 17.23628.5NoNo065
67R:R:L227 R:R:R231 15.556917.01NoNo067
68R:R:W182 R:R:Y202 10.46026.75NoYes057
69R:R:P178 R:R:Y198 12.70599.74NoYes054
70R:R:R231 R:R:R234 12.29581.07NoNo074
71R:R:L275 R:R:L290 10.92892.77NoYes043
72R:R:G176 R:R:P178 12.25672.03NoNo045
73R:R:I164 R:R:N86 13.24617.08NoNo079
74R:R:I138 R:R:R142 10.58393.76NoYes489
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K34 3.12 1 Yes No 0 6 0 1
L:L:?1 R:R:E121 6.84 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M124 5.21 1 Yes No 0 6 0 1
L:L:?1 R:R:F125 27.83 1 Yes No 0 5 0 1
L:L:?1 R:R:L128 8.16 1 Yes No 0 6 0 1
L:L:?1 R:R:S129 7.75 1 Yes No 0 6 0 1
L:L:?1 R:R:V132 5.49 1 Yes No 0 7 0 1
L:L:?1 R:R:V194 4.39 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L195 4.08 1 Yes Yes 0 3 0 1
L:L:?1 R:R:F210 3.59 1 Yes Yes 0 7 0 1
L:L:?1 R:R:W269 7.55 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L272 12.24 1 Yes No 0 6 0 1
L:L:?1 R:R:L276 6.12 1 Yes No 0 6 0 1
L:L:?1 R:R:L297 5.1 1 Yes No 0 5 0 1
R:R:K34 R:R:Y29 5.97 0 No Yes 6 7 1 2
R:R:W117 R:R:Y29 4.82 1 Yes Yes 9 7 2 2
R:R:M124 R:R:Y98 5.99 0 No Yes 6 6 1 2
R:R:L297 R:R:Y98 7.03 1 No Yes 5 6 1 2
R:R:V301 R:R:Y98 12.62 1 No Yes 7 6 2 2
R:R:N101 R:R:R120 15.67 0 No Yes 5 6 2 2
R:R:M124 R:R:N101 4.21 0 No No 6 5 1 2
R:R:R120 R:R:W117 6 1 Yes Yes 6 9 2 2
R:R:E121 R:R:W117 3.27 1 Yes Yes 5 9 1 2
R:R:E121 R:R:R120 3.49 1 Yes Yes 5 6 1 2
R:R:E121 R:R:L195 3.98 1 Yes Yes 5 3 1 1
R:R:E121 R:R:Y198 6.73 1 Yes Yes 5 4 1 2
R:R:F125 R:R:Y202 10.32 1 No Yes 5 7 1 2
R:R:C206 R:R:F125 4.19 1 No No 6 5 2 1
R:R:L128 R:R:W269 3.42 1 No Yes 6 8 1 1
R:R:L174 R:R:S129 6.01 0 No No 5 6 2 1
R:R:L213 R:R:V132 2.98 0 No No 8 7 2 1
R:R:C206 R:R:L174 3.17 1 No No 6 5 2 2
R:R:L195 R:R:S192 6.01 1 Yes No 3 4 1 2
R:R:D279 R:R:S192 5.89 1 No No 4 4 2 2
R:R:L195 R:R:V194 2.98 1 Yes Yes 3 4 1 1
R:R:D279 R:R:V194 10.22 1 No Yes 4 4 2 1
R:R:L290 R:R:V194 7.45 1 Yes Yes 3 4 2 1
R:R:L195 R:R:Y198 8.21 1 Yes Yes 3 4 1 2
R:R:C206 R:R:Y202 6.72 1 No Yes 6 7 2 2
R:R:I203 R:R:L276 7.14 0 No No 6 6 2 1
R:R:F210 R:R:L214 3.65 1 Yes No 7 5 1 2
R:R:F210 R:R:W269 11.02 1 Yes Yes 7 8 1 1
R:R:F210 R:R:F273 6.43 1 Yes No 7 6 1 2
R:R:F265 R:R:L214 4.87 0 No No 9 5 2 2
R:R:F265 R:R:W269 5.01 0 No Yes 9 8 2 1
R:R:A300 R:R:W269 5.19 0 No Yes 7 8 2 1
R:R:N303 R:R:W269 10.17 0 No Yes 9 8 2 1
R:R:D279 R:R:L290 8.14 1 No Yes 4 3 2 2
R:R:L297 R:R:V301 2.98 1 No No 5 7 1 2
R:R:A293 R:R:V194 1.7 0 No Yes 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EVZ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.95
Number of Linked Nodes 259
Number of Links 279
Number of Hubs 26
Number of Links mediated by Hubs 111
Number of Communities 6
Number of Nodes involved in Communities 39
Number of Links involved in Communities 50
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 36451
Length Of Smallest Path 3
Average Path Length 12.1388
Length of Longest Path 28
Minimum Path Strength 1.325
Average Path Strength 5.52702
Maximum Path Strength 20.035
Minimum Path Correlation 0.7
Average Path Correlation 0.931836
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 59.3476
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 35.858
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJER
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJER
NameCenerimod
SynonymsCenerimod
Identifier
FormulaC25 H31 N3 O5
Molecular Weight453.531
SMILES
PubChem49871973
Formal Charge0
Total Atoms64
Total Chiral Atoms1
Total Bonds67
Total Aromatic Bonds17

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21453
Sequence
>7EVZ_nogp_Chain_R
YDIIVRHYN YTGKLTSVV FILICCFII LENIFVLLT IWKTKKFHR 
PMYYFIGNL ALSDLLAGV AYTANLLLS GATTYKLTP AQWFLREGS 
MFVALSASV FSLLAIAIE RYITMLKMK LHNGSNNFR LFLLISACW 
VISLILGGL PIMGWNCIS ALSSCSTVL PLYHKHYIL FCTTVFTLL 
LLSIVILYC RIYSLVRTR SRRLTFRKN ISEKSLALL KTVIIVLSV 
FIACWAPLF ILLLLDVGC KVKTCDILF RAEYFLVLA VLNSGTNPI 
IYTLTNKEM RRAFIRI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8G94ALipidLysophospholipidS1P1Homo sapiens-CD69Gi1/β1/γ23.152023-04-19doi.org/10.7554/eLife.88204
8G94 (No Gprot) ALipidLysophospholipidS1P1Homo sapiens-CD693.152023-04-19doi.org/10.7554/eLife.88204
7EVYALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVY (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZALipidLysophospholipidS1P1Homo sapiensCenerimod-Gi1/β1/γ23.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZ (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCenerimod-3.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0ALipidLysophospholipidS1P1Homo sapiensOzanimod-Gi1/β1/γ23.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensOzanimod-3.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7ALipidLysophospholipidS1P1Homo sapiensSEW2871-Gi1/β1/γ23.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSEW2871-3.272021-09-29doi.org/10.1038/s41422-021-00566-x
7TD3ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ232022-02-09doi.org/10.1038/s41467-022-28417-2
7TD3 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-32022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.62022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.62022-02-09doi.org/10.1038/s41467-022-28417-2
7EO2ALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO2 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4ALipidLysophospholipidS1P1Homo sapiensBAF312-Gi1/β1/γ22.862022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensBAF312-2.862022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ23.42022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-3.42022-01-05doi.org/10.1038/s41589-021-00930-3
7VIEALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ22.862022-09-28doi.org/10.1073/pnas.2117716119
7VIE (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-2.862022-09-28doi.org/10.1073/pnas.2117716119
7VIFALipidLysophospholipidS1P1Homo sapiensS-FTY720-P-Gi1/β1/γ22.832022-09-28doi.org/10.1073/pnas.2117716119
7VIF (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS-FTY720-P-2.832022-09-28doi.org/10.1073/pnas.2117716119
7VIGALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.892022-09-28doi.org/10.1073/pnas.2117716119
7VIG (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.892022-09-28doi.org/10.1073/pnas.2117716119
7VIHALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.982022-09-28doi.org/10.1073/pnas.2117716119
7VIH (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.982022-09-28doi.org/10.1073/pnas.2117716119
3V2WALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--3.352012-02-15doi.org/10.1126/science.1215904
3V2YALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--2.82012-02-15doi.org/10.1126/science.1215904
8YICALipidLysophospholipidS1P1Homo sapiensSAR247799-Gi1/β1/γ23.472024-12-11To be published
8YIC (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSAR247799-3.472024-12-11To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EVZ_nogp.zip



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