Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:H28 5.652558
2R:R:Y29 7.2675417
3R:R:L35 5.196506
4R:R:I53 3.6675403
5R:R:T73 4.0875406
6R:R:F76 11.66528
7R:R:F83 5.108508
8R:R:D91 7.11409
9R:R:Y98 6.29406
10R:R:Y110 4.0125415
11R:R:W117 7.1425409
12R:R:R120 5.552516
13R:R:E121 7.47515
14R:R:F125 6.51333615
15R:R:L136 4.275407
16R:R:E141 8.2825479
17R:R:Y143 8.795408
18R:R:W168 4.4475489
19R:R:L174 3.6475415
20R:R:L197 6.2775454
21R:R:H199 7.8925404
22R:R:Y202 7.572517
23R:R:Y221 5.6475439
24R:R:L254 4.6075408
25R:R:W269 5.028508
26R:R:C287 3.61443
27R:R:L290 4.4525443
28R:R:L297 4.125415
29R:R:Y311 4.86143739
30R:R:E317 4.9075427
31R:R:M318 5.838528
32L:L:?1 7.4411010
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H28 R:R:L197 41.80797.71YesYes584
2R:R:I25 R:R:L197 12.23052.85NoYes044
3R:R:L197 R:R:W117 58.83174.56YesYes049
4R:R:R120 R:R:W117 33.82345YesYes069
5L:L:?1 R:R:R120 37.1539.2YesYes106
6L:L:?1 R:R:K34 32.71587.48YesNo106
7R:R:E121 R:R:W117 33.520111.99YesYes059
8L:L:?1 R:R:E121 35.57069.04YesYes105
9L:L:?1 R:R:Y29 14.47887.11YesYes107
10R:R:F291 R:R:K34 32.32689.93NoNo016
11L:L:?1 R:R:L297 36.6196.29YesYes105
12R:R:L297 R:R:Y98 33.38175.86YesYes056
13R:R:L102 R:R:Y98 17.861111.72NoYes056
14R:R:F52 R:R:V298 23.781917.04NoNo065
15R:R:V298 R:R:Y98 24.22363.79NoYes056
16R:R:F52 R:R:I55 21.72482.51NoNo066
17R:R:I55 R:R:L302 20.88091.43NoNo066
18R:R:I59 R:R:L302 18.7381.43NoNo076
19L:L:?1 R:R:F125 10012.92YesYes105
20R:R:F125 R:R:S129 98.04183.96YesNo056
21R:R:S129 R:R:S171 97.62643.26NoNo068
22R:R:A130 R:R:S171 96.4993.42NoNo078
23R:R:A130 R:R:S90 40.19913.42NoNo878
24R:R:S131 R:R:S90 42.55293.26NoNo098
25R:R:D91 R:R:S131 42.17055.89YesNo099
26R:R:D91 R:R:S304 19.206211.78YesNo099
27R:R:I59 R:R:S304 18.42163.1NoNo079
28R:R:E62 R:R:F65 10.02843.5NoNo087
29R:R:E62 R:R:P308 11.62394.72NoNo089
30R:R:N63 R:R:P308 15.0268.15NoNo099
31R:R:D91 R:R:N63 56.74164.04YesNo099
32R:R:A88 R:R:N63 41.18813.13NoNo099
33R:R:F76 R:R:M318 18.93583.73YesYes288
34R:R:I70 R:R:M318 35.06962.92NoYes078
35R:R:G85 R:R:I70 38.1421.76NoNo057
36R:R:A88 R:R:G85 39.66511.95NoNo095
37R:R:F83 R:R:I138 20.84135.02YesNo088
38R:R:I138 R:R:Y311 22.46984.84NoYes089
39R:R:L135 R:R:Y311 73.35663.52NoYes099
40R:R:L135 R:R:L87 74.58965.54NoNo099
41R:R:L87 R:R:S134 54.86913NoNo098
42R:R:N86 R:R:S134 55.35044.47NoNo098
43R:R:N86 R:R:W168 56.17467.91NoYes099
44R:R:A130 R:R:W168 55.97023.89NoYes879
45R:R:D91 R:R:N307 23.48526.73YesNo099
46R:R:C206 R:R:F125 51.20994.19NoYes065
47R:R:C206 R:R:F210 49.79234.19NoNo067
48R:R:F210 R:R:W269 49.20558.02NoYes078
49R:R:V132 R:R:W269 26.77523.68NoYes078
50R:R:L213 R:R:V132 25.07424.47NoNo087
51R:R:L136 R:R:L213 19.89195.54YesNo078
52R:R:I217 R:R:L136 11.10965.71NoYes087
53R:R:A139 R:R:Y221 25.94455.34NoYes089
54R:R:Y221 R:R:Y311 44.21443.97YesYes399
55R:R:A139 R:R:L220 24.29621.58NoNo087
56R:R:L220 R:R:Y143 22.63472.34NoYes078
57R:R:I224 R:R:Y143 14.12948.46NoYes098
58R:R:I224 R:R:M146 12.37562.92NoNo098
59R:R:C184 R:R:H199 18.26992.95NoYes054
60R:R:C184 R:R:C191 21.26997.28NoNo059
61R:R:C191 R:R:H28 24.25664.42NoYes098
62R:R:F291 R:R:T193 26.39943.89NoNo015
63R:R:F265 R:R:W269 12.91628.02NoYes098
64R:R:V258 R:R:Y221 19.2265.05NoYes089
65R:R:L254 R:R:V258 17.70292.98YesNo088
66R:R:L254 R:R:Y225 12.52728.21YesNo086
67R:R:L290 R:R:T193 16.19312.95YesNo035
68R:R:F125 R:R:Y202 10.727211.35YesYes157
69R:R:L87 R:R:N307 22.39079.61NoNo099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K34 R:R:Y29 3.58 1 No Yes 6 7 1 1
R:R:L35 R:R:Y29 5.86 0 Yes Yes 6 7 2 1
R:R:P196 R:R:Y29 12.52 0 No Yes 3 7 2 1
L:L:?1 R:R:Y29 7.11 1 Yes Yes 0 7 0 1
R:R:F291 R:R:K34 9.93 0 No No 1 6 2 1
L:L:?1 R:R:K34 7.48 1 Yes No 0 6 0 1
R:R:L35 R:R:Y110 3.52 0 Yes Yes 6 5 2 2
R:R:L297 R:R:Y98 5.86 1 Yes Yes 5 6 1 2
R:R:N101 R:R:R120 4.82 1 No Yes 5 6 1 1
L:L:?1 R:R:N101 9.36 1 Yes No 0 5 0 1
R:R:L104 R:R:R120 4.86 0 No Yes 4 6 2 1
R:R:T109 R:R:Y110 3.75 1 No Yes 5 5 1 2
R:R:R120 R:R:T109 3.88 1 Yes No 6 5 1 1
L:L:?1 R:R:T109 5.58 1 Yes No 0 5 0 1
R:R:R120 R:R:W117 5 1 Yes Yes 6 9 1 2
R:R:E121 R:R:W117 11.99 1 Yes Yes 5 9 1 2
L:L:?1 R:R:R120 9.2 1 Yes Yes 0 6 0 1
R:R:E121 R:R:L195 7.95 1 Yes No 5 3 1 1
R:R:E121 R:R:Y198 6.73 1 Yes No 5 4 1 2
L:L:?1 R:R:E121 9.04 1 Yes Yes 0 5 0 1
R:R:M124 R:R:S123 3.07 0 No No 6 4 1 2
L:L:?1 R:R:M124 4.28 1 Yes No 0 6 0 1
R:R:F125 R:R:S129 3.96 1 Yes No 5 6 1 2
R:R:F125 R:R:L174 3.65 1 Yes Yes 5 5 1 2
R:R:F125 R:R:G175 3.01 1 Yes No 5 6 1 2
R:R:F125 R:R:Y202 11.35 1 Yes Yes 5 7 1 2
R:R:C206 R:R:F125 4.19 0 No Yes 6 5 2 1
L:L:?1 R:R:F125 12.92 1 Yes Yes 0 5 0 1
R:R:L174 R:R:Y202 5.86 1 Yes Yes 5 7 2 2
L:L:?1 R:R:L195 3.15 1 Yes No 0 3 0 1
R:R:Y198 R:R:Y202 9.93 0 No Yes 4 7 2 2
L:L:?1 R:R:L297 6.29 1 Yes Yes 0 5 0 1
R:R:L272 R:R:L297 2.77 1 No Yes 6 5 2 1
R:R:E121 R:R:G122 1.64 1 Yes No 5 6 1 2
R:R:A300 R:R:L272 1.58 1 No No 7 6 2 2
R:R:A300 R:R:L297 1.58 1 No Yes 7 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7WF7_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.98
Number of Linked Nodes 256
Number of Links 278
Number of Hubs 32
Number of Links mediated by Hubs 127
Number of Communities 8
Number of Nodes involved in Communities 45
Number of Links involved in Communities 55
Path Summary
Number Of Nodes in MetaPath 70
Number Of Links MetaPath 69
Number of Shortest Paths 37266
Length Of Smallest Path 3
Average Path Length 13.6295
Length of Longest Path 30
Minimum Path Strength 1.38
Average Path Strength 5.37367
Maximum Path Strength 23.885
Minimum Path Correlation 0.7
Average Path Correlation 0.932924
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 52.9832
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.5268
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeS1P
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeS1P
Name(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate
Synonymssphingosine 1-phosphate
Identifier
FormulaC18 H38 N O5 P
Molecular Weight379.472
SMILES
PubChem5283560
Formal Charge0
Total Atoms63
Total Chiral Atoms2
Total Bonds62
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21453
Sequence
>7WF7_nogp_Chain_R
DIIVRHYNY TGKLNKLTS VVFILICCF IILENIFVL LTIWKTKKF 
HRPMYYFIG NLALSDLLA GVAYTANLL LSGATTYKL TPAQWFLRE 
GSMFVALSA SVWSLLAIA IERYITMLK MKLHFRLFL LISACWVIS 
LILGGLPIM GWNCSALSS CSTVLPLYH KHYILFCTT VFTLLLLSI 
VILYCRIYS LVRTRSRRL TFLALLKTV IIVLSVFIA CWAPLFILL 
LLDVKVKTC DILFRAEYF LVLAVLNSG TNPIIYTLT NKEMRRAFI 
R


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
3V2WALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--3.352012-02-15doi.org/10.1126/science.1215904
3V2YALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--2.82012-02-15doi.org/10.1126/science.1215904
7EVYALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVY (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZALipidLysophospholipidS1P1Homo sapiensCenerimod-Gi1/β1/γ23.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZ (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCenerimod-3.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0ALipidLysophospholipidS1P1Homo sapiensOzanimod-Gi1/β1/γ23.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensOzanimod-3.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7ALipidLysophospholipidS1P1Homo sapiensSEW2871-Gi1/β1/γ23.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSEW2871-3.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EO2ALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO2 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.862022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.862022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ23.42022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-3.42022-01-05doi.org/10.1038/s41589-021-00930-3
7TD3ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ232022-02-09doi.org/10.1038/s41467-022-28417-2
7TD3 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-32022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.62022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.62022-02-09doi.org/10.1038/s41467-022-28417-2
7VIEALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ22.862022-09-28doi.org/10.1073/pnas.2117716119
7VIE (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-2.862022-09-28doi.org/10.1073/pnas.2117716119
7VIFALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.832022-09-28doi.org/10.1073/pnas.2117716119
7VIF (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.832022-09-28doi.org/10.1073/pnas.2117716119
7VIGALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.892022-09-28doi.org/10.1073/pnas.2117716119
7VIG (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.892022-09-28doi.org/10.1073/pnas.2117716119
7VIHALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.982022-09-28doi.org/10.1073/pnas.2117716119
7VIH (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.982022-09-28doi.org/10.1073/pnas.2117716119
8G94ALipidLysophospholipidS1P1Homo sapiens-CD69Gi1/β1/γ23.152023-04-19doi.org/10.7554/eLife.88204
8G94 (No Gprot) ALipidLysophospholipidS1P1Homo sapiens-CD693.152023-04-19doi.org/10.7554/eLife.88204
8YICALipidLysophospholipidS1P1Homo sapiensSAR247799-Gi1/β1/γ23.472024-12-11To be published
8YIC (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSAR247799-3.472024-12-11To be published




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Download 7WF7_nogp.zip



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