Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.987691310
2R:R:H28 5.766518
3R:R:Y29 7.3325407
4R:R:F52 3.352506
5R:R:E62 2.8175448
6R:R:I70 2.6725407
7R:R:F76 7.952528
8R:R:R78 5.385427
9R:R:M80 4.9875408
10R:R:Y81 10.844529
11R:R:F83 4.888508
12R:R:L87 4.645409
13R:R:D91 5.48559
14R:R:Y98 5.3825406
15R:R:L102 4.325405
16R:R:W117 7.10333619
17R:R:F118 5.87416
18R:R:R120 6.9275406
19R:R:M124 3.3375416
20R:R:S129 3.34406
21R:R:F133 6.0175405
22R:R:I138 3.19468
23R:R:L160 4.96507
24R:R:W168 4.28833679
25R:R:P178 5.2175415
26R:R:V194 4.514534
27R:R:L197 5.87414
28R:R:Y198 3.534514
29R:R:Y202 5.87667617
30R:R:C206 3.9175416
31R:R:Y221 3.396509
32R:R:Y225 7.3725406
33R:R:W269 7.088518
34R:R:L276 5.035416
35R:R:L278 3.43434
36R:R:L290 4.65167633
37R:R:Y311 3.57469
38R:R:E317 5.435427
39R:R:M318 7.435428
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:E121 35.096112YesNo105
2R:R:E121 R:R:W117 30.502414.17NoYes159
3R:R:L197 R:R:W117 18.986.83YesYes149
4L:L:?1 R:R:N101 12.48156.69YesNo105
5R:R:N101 R:R:R120 16.389512.05NoYes056
6R:R:W117 R:R:Y29 11.02056.75YesYes097
7L:L:?1 R:R:M124 26.15963.94YesYes106
8R:R:M124 R:R:Y98 26.89023.59YesYes066
9R:R:F52 R:R:Y98 21.45835.16YesYes066
10R:R:F52 R:R:L102 10.34822.44YesYes065
11L:L:?1 R:R:S129 84.5743.14YesYes006
12R:R:S129 R:R:S171 95.72893.26YesNo068
13R:R:S171 R:R:W168 95.2362.47NoYes789
14R:R:S90 R:R:W168 99.80282.47NoYes089
15R:R:S131 R:R:S90 99.86553.26NoNo098
16R:R:D91 R:R:S131 99.91932.94YesNo099
17R:R:D91 R:R:L87 1004.07YesYes099
18R:R:I138 R:R:L87 75.92882.85YesYes089
19R:R:I138 R:R:R142 36.78122.51YesNo689
20R:R:M80 R:R:R142 44.49422.48YesNo089
21R:R:M80 R:R:R78 28.12713.72YesYes087
22R:R:R78 R:R:Y81 20.548610.29YesYes279
23R:R:M318 R:R:Y81 10.48279.58YesYes289
24R:R:M318 R:R:T312 16.66746.02YesNo087
25R:R:L313 R:R:T312 14.61482.95NoNo067
26R:R:I309 R:R:L313 12.55322.85NoNo066
27R:R:E62 R:R:I309 10.48272.73YesNo086
28R:R:I84 R:R:M80 20.21242.92NoYes088
29R:R:I70 R:R:I84 19.26682.94YesNo078
30R:R:G85 R:R:I70 10.22271.76NoYes057
31R:R:F83 R:R:I138 19.02483.77YesYes088
32R:R:F83 R:R:L163 13.97844.87YesNo086
33R:R:L135 R:R:L87 24.19224.15NoYes099
34R:R:L174 R:R:S129 13.53473NoYes056
35R:R:L135 R:R:Y311 23.84263.52NoYes099
36R:R:I138 R:R:Y311 26.88123.63YesYes689
37R:R:Y221 R:R:Y311 57.02951.99YesYes099
38R:R:I217 R:R:Y221 30.96852.42NoYes089
39R:R:I217 R:R:L136 29.20724.28NoNo087
40R:R:I140 R:R:L136 25.65775.71NoNo067
41R:R:I140 R:R:L220 22.07232.85NoNo067
42R:R:L220 R:R:Y143 20.266210.55NoNo078
43R:R:L147 R:R:Y143 16.62713.52NoNo068
44R:R:L262 R:R:Y221 18.02543.52NoYes079
45R:R:L262 R:R:V258 16.32681.49NoNo078
46R:R:L254 R:R:V258 14.48031.49NoNo088
47R:R:L163 R:R:R159 12.7372.43NoNo065
48L:L:?1 R:R:L195 22.52516.38YesNo003
49R:R:L195 R:R:V194 21.373210.43NoYes034
50R:R:L290 R:R:V194 14.11282.98YesYes334
51L:L:?1 R:R:L276 10.07488.67YesYes106
52L:L:?1 R:R:W269 11.61215.55YesYes108
53R:R:L174 R:R:Y202 11.28943.52NoYes157
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:N101 6.69 1 Yes No 0 5 0 1
L:L:?1 R:R:E121 12 1 Yes No 0 5 0 1
L:L:?1 R:R:M124 3.94 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F125 22.05 1 Yes No 0 5 0 1
L:L:?1 R:R:L128 12.53 1 Yes No 0 6 0 1
L:L:?1 R:R:S129 3.14 1 Yes Yes 0 6 0 1
L:L:?1 R:R:V132 4.15 1 Yes No 0 7 0 1
L:L:?1 R:R:L195 16.38 1 Yes No 0 3 0 1
L:L:?1 R:R:F210 10.18 1 Yes No 0 7 0 1
L:L:?1 R:R:W269 5.55 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L272 2.89 1 Yes No 0 6 0 1
L:L:?1 R:R:L276 8.67 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L297 8.67 1 Yes No 0 5 0 1
R:R:M124 R:R:Y98 3.59 1 Yes Yes 6 6 1 2
R:R:N101 R:R:R120 12.05 1 No Yes 5 6 1 2
R:R:M124 R:R:N101 4.21 1 Yes No 6 5 1 1
R:R:R120 R:R:W117 7 0 Yes Yes 6 9 2 2
R:R:E121 R:R:W117 14.17 1 No Yes 5 9 1 2
R:R:W117 R:R:Y198 3.86 1 Yes Yes 9 4 2 2
R:R:E121 R:R:Y198 5.61 1 No Yes 5 4 1 2
R:R:F125 R:R:Y202 4.13 1 No Yes 5 7 1 2
R:R:C206 R:R:F125 2.79 1 Yes No 6 5 2 1
R:R:L128 R:R:W269 5.69 1 No Yes 6 8 1 1
R:R:F133 R:R:S129 3.96 0 Yes Yes 5 6 2 1
R:R:S129 R:R:S171 3.26 0 Yes No 6 8 1 2
R:R:L174 R:R:S129 3 1 No Yes 5 6 2 1
R:R:L213 R:R:V132 2.98 0 No No 8 7 2 1
R:R:F133 R:R:L213 8.53 0 Yes No 5 8 2 2
R:R:L174 R:R:Y202 3.52 1 No Yes 5 7 2 2
R:R:C206 R:R:L174 4.76 1 Yes No 6 5 2 2
R:R:L195 R:R:V194 10.43 0 No Yes 3 4 1 2
R:R:Y198 R:R:Y202 3.97 1 Yes Yes 4 7 2 2
R:R:C206 R:R:Y202 6.72 1 Yes Yes 6 7 2 2
R:R:I203 R:R:L276 4.28 0 No Yes 6 6 2 1
R:R:L276 R:R:T207 4.42 1 Yes No 6 5 1 2
R:R:F210 R:R:W269 10.02 1 No Yes 7 8 1 1
R:R:F210 R:R:F273 7.5 1 No No 7 6 1 2
R:R:F265 R:R:W269 4.01 0 No Yes 9 8 2 1
R:R:N303 R:R:W269 10.17 0 No Yes 9 8 2 1
R:R:L272 R:R:L276 2.77 1 No Yes 6 6 1 1
R:R:A97 R:R:M124 1.61 0 No Yes 4 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EW7_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.47
Number of Linked Nodes 257
Number of Links 287
Number of Hubs 39
Number of Links mediated by Hubs 149
Number of Communities 8
Number of Nodes involved in Communities 54
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 54
Number Of Links MetaPath 53
Number of Shortest Paths 40703
Length Of Smallest Path 3
Average Path Length 13.9961
Length of Longest Path 27
Minimum Path Strength 1.25
Average Path Strength 4.68312
Maximum Path Strength 19.215
Minimum Path Correlation 0.7
Average Path Correlation 0.92323
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 49.9766
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.7363
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJEX
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJEX
Name5-[4-phenyl-5-(trifluoromethyl)thiophen-2-yl]-3-[3-(trifluoromethyl)phenyl]-1,2,4-oxadiazole
Synonyms
Identifier
FormulaC20 H10 F6 N2 O S
Molecular Weight440.362
SMILES
PubChem4077460
Formal Charge0
Total Atoms40
Total Chiral Atoms0
Total Bonds43
Total Aromatic Bonds22

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21453
Sequence
>7EW7_nogp_Chain_R
YDIIVRHYN YTGKLKLTS VVFILICCF IILENIFVL LTIWKTKKF 
HRPMYYFIG NLALSDLLA GVAYTANLL LSGATTYKL TPAQWFLRE 
GSMFVALSA SVFSLLAIA IERYITMLK MKLHNGSNN FRLFLLISA 
CWVISLILG GLPIMGWNC ISALSSCST VLPLYHKHY ILFCTTVFT 
LLLLSIVIL YCRIYSLVR TRSRRLTFR KSEKSLALL KTVIIVLSV 
FIACWAPLF ILLLLDVGC KVKTCDILF RAEYFLVLA VLNSGTNPI 
IYTLTNKEM RRAFIRI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
3V2WALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--3.352012-02-15doi.org/10.1126/science.1215904
3V2YALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--2.82012-02-15doi.org/10.1126/science.1215904
7EVYALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVY (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZALipidLysophospholipidS1P1Homo sapiensCenerimod-Gi1/β1/γ23.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZ (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCenerimod-3.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0ALipidLysophospholipidS1P1Homo sapiensOzanimod-Gi1/β1/γ23.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensOzanimod-3.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7ALipidLysophospholipidS1P1Homo sapiensSEW2871-Gi1/β1/γ23.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSEW2871-3.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EO2ALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO2 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.862022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.862022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ23.42022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-3.42022-01-05doi.org/10.1038/s41589-021-00930-3
7TD3ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ232022-02-09doi.org/10.1038/s41467-022-28417-2
7TD3 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-32022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.62022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.62022-02-09doi.org/10.1038/s41467-022-28417-2
7VIEALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ22.862022-09-28doi.org/10.1073/pnas.2117716119
7VIE (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-2.862022-09-28doi.org/10.1073/pnas.2117716119
7VIFALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.832022-09-28doi.org/10.1073/pnas.2117716119
7VIF (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.832022-09-28doi.org/10.1073/pnas.2117716119
7VIGALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.892022-09-28doi.org/10.1073/pnas.2117716119
7VIG (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.892022-09-28doi.org/10.1073/pnas.2117716119
7VIHALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.982022-09-28doi.org/10.1073/pnas.2117716119
7VIH (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.982022-09-28doi.org/10.1073/pnas.2117716119
8G94ALipidLysophospholipidS1P1Homo sapiens-CD69Gi1/β1/γ23.152023-04-19doi.org/10.7554/eLife.88204
8G94 (No Gprot) ALipidLysophospholipidS1P1Homo sapiens-CD693.152023-04-19doi.org/10.7554/eLife.88204
8YICALipidLysophospholipidS1P1Homo sapiensSAR247799-Gi1/β1/γ23.472024-12-11To be published
8YIC (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSAR247799-3.472024-12-11To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EW7_nogp.zip



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