Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:H28 4.9618
2R:R:Y29 7.14517
3R:R:K34 4.105416
4R:R:F52 7.558516
5R:R:I59 3.1225427
6R:R:N63 3.955429
7R:R:I70 2.372507
8R:R:F76 8.16833638
9R:R:F83 3.682508
10R:R:L87 4.2225409
11R:R:D91 5.19667629
12R:R:Y98 7.65857716
13R:R:T109 6.538515
14R:R:Y110 4.9415
15R:R:P114 3.31403
16R:R:W117 6.10833619
17R:R:F118 4.515616
18R:R:R120 4.948516
19R:R:E121 4.67833615
20R:R:M124 6.095416
21R:R:W133 4.16405
22R:R:I138 3.685408
23R:R:R142 5.4725409
24R:R:Y143 6.98408
25R:R:W168 3.912559
26R:R:P178 3.675415
27R:R:I185 4.9425413
28R:R:L195 4.95413
29R:R:P196 4.1975413
30R:R:L197 5.836514
31R:R:Y198 6.766514
32R:R:Y202 5.00333617
33R:R:L252 2.688505
34R:R:W269 8.0125408
35R:R:F273 4.785406
36R:R:D279 5.7075414
37R:R:L290 4.315413
38R:R:I310 3.9975408
39R:R:Y311 4.48429
40R:R:M318 5.504538
41R:R:F322 8.2537
42L:L:?1 5.851541310
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F118 R:R:P114 14.72712.89YesYes063
2R:R:H28 R:R:L197 34.215510.29YesYes184
3R:R:C191 R:R:H28 21.18892.95NoYes098
4R:R:L197 R:R:W117 30.88889.11YesYes149
5R:R:W117 R:R:Y29 10.86156.75YesYes197
6R:R:L197 R:R:P196 11.37643.28YesYes143
7R:R:P196 R:R:Y29 10.91665.56YesYes137
8R:R:F118 R:R:Y198 18.79635.16YesYes164
9R:R:E121 R:R:Y198 12.77275.61YesYes154
10L:L:?1 R:R:E121 25.02579.23YesYes105
11L:L:?1 R:R:K34 10.39693.68YesYes106
12R:R:L195 R:R:Y198 13.723610.55YesYes134
13L:L:?1 R:R:L195 21.79963.62YesYes103
14R:R:T109 R:R:W117 10.64593.64YesYes159
15L:L:?1 R:R:M124 11.54176.16YesYes106
16R:R:M124 R:R:Y98 11.34778.38YesYes166
17L:L:?1 R:R:L297 11.60873.62YesNo005
18R:R:L297 R:R:Y98 10.72024.69NoYes056
19L:L:?1 R:R:F210 99.88986.36YesNo007
20R:R:F210 R:R:W269 10012.03NoYes078
21R:R:V132 R:R:W269 44.38722.45NoYes078
22R:R:L213 R:R:V132 44.06635.96NoNo087
23R:R:L213 R:R:W133 43.5257.97NoYes085
24R:R:C167 R:R:W133 42.7492.61NoYes065
25R:R:C167 R:R:W168 42.49513.92NoYes069
26R:R:N86 R:R:W168 40.92883.39NoYes099
27R:R:N86 R:R:S134 40.66065.96NoNo098
28R:R:L87 R:R:S134 40.11933YesNo098
29R:R:D91 R:R:L87 13.90564.07YesYes099
30R:R:D91 R:R:N63 13.36196.73YesYes299
31R:R:F265 R:R:W269 56.24754.01NoYes098
32R:R:F265 R:R:L214 55.70147.31NoNo095
33R:R:L214 R:R:V218 55.43071.49NoNo054
34R:R:L262 R:R:V218 54.88471.49NoNo074
35R:R:L262 R:R:V261 54.37692.98NoNo078
36R:R:I310 R:R:V261 53.63213.07YesNo088
37R:R:I310 R:R:Y311 52.30282.42YesYes089
38R:R:N307 R:R:Y311 11.91295.81NoYes299
39R:R:D91 R:R:N307 11.44835.39YesNo299
40R:R:I138 R:R:L87 32.87194.28YesYes089
41R:R:I138 R:R:I84 49.34022.94YesNo088
42R:R:I70 R:R:I84 48.22892.94YesNo078
43R:R:I70 R:R:V66 13.59183.07YesNo079
44R:R:F322 R:R:V66 12.38232.62YesNo079
45R:R:F322 R:R:T312 12.53567.78YesNo077
46R:R:L313 R:R:T312 10.03762.95NoNo067
47R:R:R142 R:R:Y311 41.52526.17YesYes099
48R:R:I138 R:R:R142 32.54145.01YesYes089
49R:R:I70 R:R:M318 25.92632.92YesYes078
50R:R:F322 R:R:M318 12.62187.46YesYes378
51R:R:F83 R:R:I138 12.67692.51YesYes088
52R:R:R142 R:R:Y221 15.37378.23YesNo099
53R:R:I217 R:R:Y221 14.61212.42NoNo089
54R:R:A139 R:R:I217 10.69621.62NoNo088
55R:R:C184 R:R:C191 18.55677.28NoNo059
56R:R:C184 R:R:S190 15.91985.16NoNo054
57R:R:L195 R:R:V194 11.16572.98YesNo134
58L:L:?1 R:R:Y29 20.55426.13YesYes107
59L:L:?1 R:R:T109 15.80258.99YesYes105
60R:R:E121 R:R:W117 10.80885.45YesYes159
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K34 R:R:Y29 4.78 1 Yes Yes 6 7 1 1
R:R:T109 R:R:Y29 12.48 1 Yes Yes 5 7 1 1
R:R:W117 R:R:Y29 6.75 1 Yes Yes 9 7 2 1
R:R:P196 R:R:Y29 5.56 1 Yes Yes 3 7 2 1
L:L:?1 R:R:Y29 6.13 1 Yes Yes 0 7 0 1
R:R:K34 R:R:T32 3 1 Yes No 6 8 1 2
R:R:P196 R:R:T32 5.25 1 Yes No 3 8 2 2
R:R:F291 R:R:K34 4.96 0 No Yes 1 6 2 1
L:L:?1 R:R:K34 3.68 1 Yes Yes 0 6 0 1
R:R:M124 R:R:Y98 8.38 1 Yes Yes 6 6 1 2
R:R:L297 R:R:Y98 4.69 0 No Yes 5 6 1 2
R:R:N101 R:R:R120 7.23 1 No Yes 5 6 1 2
R:R:M124 R:R:N101 7.01 1 Yes No 6 5 1 1
L:L:?1 R:R:N101 5.98 1 Yes No 0 5 0 1
R:R:G106 R:R:S105 3.71 0 No No 4 4 2 1
L:L:?1 R:R:S105 5.23 1 Yes No 0 4 0 1
R:R:T109 R:R:Y110 4.99 1 Yes Yes 5 5 1 2
R:R:T109 R:R:W117 3.64 1 Yes Yes 5 9 1 2
R:R:R120 R:R:T109 2.59 1 Yes Yes 6 5 2 1
L:L:?1 R:R:T109 8.99 1 Yes Yes 0 5 0 1
R:R:R120 R:R:W117 9 1 Yes Yes 6 9 2 2
R:R:E121 R:R:W117 5.45 1 Yes Yes 5 9 1 2
R:R:P196 R:R:W117 2.7 1 Yes Yes 3 9 2 2
R:R:E121 R:R:R120 3.49 1 Yes Yes 5 6 1 2
R:R:E121 R:R:L195 2.65 1 Yes Yes 5 3 1 1
R:R:E121 R:R:Y198 5.61 1 Yes Yes 5 4 1 2
L:L:?1 R:R:E121 9.23 1 Yes Yes 0 5 0 1
R:R:L128 R:R:M124 2.83 1 No Yes 6 6 1 1
L:L:?1 R:R:M124 6.16 1 Yes Yes 0 6 0 1
R:R:F125 R:R:Y202 3.09 1 No Yes 5 7 1 2
R:R:C206 R:R:F125 8.38 1 No No 6 5 2 1
L:L:?1 R:R:F125 7.43 1 Yes No 0 5 0 1
L:L:?1 R:R:L128 7.23 1 Yes No 0 6 0 1
R:R:L195 R:R:V194 2.98 1 Yes No 3 4 1 2
R:R:L195 R:R:Y198 10.55 1 Yes Yes 3 4 1 2
L:L:?1 R:R:L195 3.62 1 Yes Yes 0 3 0 1
R:R:Y198 R:R:Y202 6.95 1 Yes Yes 4 7 2 2
R:R:C206 R:R:Y202 6.72 1 No Yes 6 7 2 2
R:R:F210 R:R:W269 12.03 0 No Yes 7 8 1 2
R:R:F210 R:R:F273 7.5 0 No Yes 7 6 1 2
L:L:?1 R:R:F210 6.36 1 Yes No 0 7 0 1
R:R:L272 R:R:L276 2.77 0 No No 6 6 1 2
R:R:A300 R:R:L272 4.73 0 No No 7 6 2 1
L:L:?1 R:R:L297 3.62 1 Yes No 0 5 0 1
L:L:?1 R:R:L272 2.41 1 Yes No 0 6 0 1
R:R:E121 R:R:G122 1.64 1 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EO2_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.45
Number of Linked Nodes 258
Number of Links 295
Number of Hubs 42
Number of Links mediated by Hubs 160
Number of Communities 5
Number of Nodes involved in Communities 62
Number of Links involved in Communities 94
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 63485
Length Of Smallest Path 3
Average Path Length 15.7144
Length of Longest Path 30
Minimum Path Strength 1.465
Average Path Strength 4.9902
Maximum Path Strength 17.065
Minimum Path Correlation 0.7
Average Path Correlation 0.941642
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 54.851
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.254
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJ89
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ89
Name(2~{S})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol
Synonyms
Identifier
FormulaC19 H34 N O5 P
Molecular Weight387.451
SMILES
PubChem11452022
Formal Charge0
Total Atoms60
Total Chiral Atoms1
Total Bonds60
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21453
Sequence
>7EO2_nogp_Chain_R
VNYDIIVRH YNYTGKLKL TSVVFILIC CFIILENIF VLLTIWKTK 
KFHRPMYYF IGNLALSDL LAGVAYTAN LLLSGATTY KLTPAQWFL 
REGSMFVAL SASVWSLLA IAIERYITM LKMKLHNFR LFLLISACW 
VISLILGGL PIMGWNCIS ALSSCSTVL PLYHKHYIL FCTTVFTLL 
LLSIVILYC RIYSLVRTR SRRLTFKSL ALLKTVIIV LSVFIACWA 
PLFILLLLD VGCKVKTCD ILFRAEYFL VLAVLNSGT NPIIYTLTN 
KEMRRAFIR I


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8G94ALipidLysophospholipidS1P1Homo sapiens-CD69Gi1/β1/γ23.152023-04-19doi.org/10.7554/eLife.88204
8G94 (No Gprot) ALipidLysophospholipidS1P1Homo sapiens-CD693.152023-04-19doi.org/10.7554/eLife.88204
7EVYALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVY (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZALipidLysophospholipidS1P1Homo sapiensCenerimod-Gi1/β1/γ23.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZ (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCenerimod-3.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0ALipidLysophospholipidS1P1Homo sapiensOzanimod-Gi1/β1/γ23.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensOzanimod-3.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7ALipidLysophospholipidS1P1Homo sapiensSEW2871-Gi1/β1/γ23.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSEW2871-3.272021-09-29doi.org/10.1038/s41422-021-00566-x
7TD3ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ232022-02-09doi.org/10.1038/s41467-022-28417-2
7TD3 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-32022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.62022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.62022-02-09doi.org/10.1038/s41467-022-28417-2
7EO2ALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO2 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4ALipidLysophospholipidS1P1Homo sapiensBAF312-Gi1/β1/γ22.862022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensBAF312-2.862022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ23.42022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-3.42022-01-05doi.org/10.1038/s41589-021-00930-3
7VIEALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ22.862022-09-28doi.org/10.1073/pnas.2117716119
7VIE (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-2.862022-09-28doi.org/10.1073/pnas.2117716119
7VIFALipidLysophospholipidS1P1Homo sapiensS-FTY720-P-Gi1/β1/γ22.832022-09-28doi.org/10.1073/pnas.2117716119
7VIF (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS-FTY720-P-2.832022-09-28doi.org/10.1073/pnas.2117716119
7VIGALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.892022-09-28doi.org/10.1073/pnas.2117716119
7VIG (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.892022-09-28doi.org/10.1073/pnas.2117716119
7VIHALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.982022-09-28doi.org/10.1073/pnas.2117716119
7VIH (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.982022-09-28doi.org/10.1073/pnas.2117716119
3V2WALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--3.352012-02-15doi.org/10.1126/science.1215904
3V2YALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--2.82012-02-15doi.org/10.1126/science.1215904
8YICALipidLysophospholipidS1P1Homo sapiensSAR247799-Gi1/β1/γ23.472024-12-11To be published
8YIC (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSAR247799-3.472024-12-11To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EO2_nogp.zip



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