Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.542671510
2R:R:H28 5.53167608
3R:R:Y29 4.06617
4R:R:F52 7.095416
5R:R:F76 10.58408
6R:R:R78 6.315407
7R:R:Y81 9.622539
8R:R:F83 5.376528
9R:R:L87 6.03409
10R:R:D91 6.8425409
11R:R:L92 3.1575406
12R:R:Y98 4.775616
13R:R:W117 6.13375819
14R:R:F118 6.44516
15R:R:R120 7.39516
16R:R:E121 8.3475415
17R:R:M124 4.2925416
18R:R:I138 4.4075428
19R:R:R142 4.2375429
20R:R:M146 3.59408
21R:R:R159 4.365425
22R:R:V194 3.85414
23R:R:L195 5.158513
24R:R:L197 6.1075414
25R:R:Y198 5.01333614
26R:R:Y202 7.665417
27R:R:I203 3.3125416
28R:R:T207 3.9405
29R:R:Y221 3.846509
30R:R:Y225 5.1075446
31R:R:R231 4.645407
32R:R:W269 6.206518
33R:R:F273 5.115406
34R:R:L276 4.942516
35R:R:D279 3.77667614
36R:R:V280 4.315414
37R:R:L290 3.94613
38R:R:Y311 4.6075429
39R:R:M318 6.99438
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y29 30.28486.21YesYes107
2L:L:?1 R:R:M124 17.9443.74YesYes106
3L:L:?1 R:R:L195 19.11268.25YesYes103
4R:R:W117 R:R:Y29 14.23542.89YesYes197
5R:R:L195 R:R:W117 15.78294.56YesYes139
6L:L:?1 R:R:W269 94.85394.53YesYes108
7L:L:?1 R:R:L297 15.10578.25YesNo105
8R:R:P196 R:R:Y29 13.11825.56NoYes037
9R:R:H28 R:R:P196 10.88866.1YesNo083
10R:R:M124 R:R:Y98 15.253.59YesYes166
11R:R:L297 R:R:Y98 14.29413.52NoYes156
12R:R:C56 R:R:Y98 12.33595.38NoYes056
13R:R:C56 R:R:T99 10.58793.38NoNo056
14R:R:N303 R:R:W269 1007.91NoYes098
15R:R:N303 R:R:N307 99.89245.45NoNo099
16R:R:L135 R:R:N307 75.27444.12NoNo099
17R:R:L135 R:R:Y311 63.66213.52NoYes099
18R:R:R142 R:R:Y311 38.79235.14YesYes299
19R:R:M80 R:R:R142 29.93284.96NoYes089
20R:R:M80 R:R:R78 31.35567.44NoYes087
21R:R:R78 R:R:Y81 27.236311.32YesYes079
22R:R:D91 R:R:N307 25.00432.69YesNo099
23R:R:D91 R:R:S304 10.580611.78YesNo099
24R:R:F76 R:R:Y81 11.587823.73YesYes089
25R:R:D91 R:R:L87 16.88794.07YesYes099
26R:R:I138 R:R:L87 22.89942.85YesYes089
27R:R:F83 R:R:I138 23.98243.77YesYes288
28R:R:L135 R:R:L87 11.95949.69NoYes099
29R:R:F83 R:R:L163 12.92024.87YesNo286
30R:R:F118 R:R:W117 27.13854.01YesYes169
31R:R:R142 R:R:Y221 22.29563.09YesYes099
32R:R:I217 R:R:Y221 32.63662.42NoYes089
33R:R:I217 R:R:L136 31.38254.28NoNo087
34R:R:I140 R:R:L136 28.85965.71NoNo067
35R:R:V261 R:R:Y311 17.19842.52NoYes089
36R:R:V261 R:R:Y221 15.73652.52NoYes089
37R:R:I140 R:R:L220 27.59082.85NoNo067
38R:R:L220 R:R:Y143 26.31713.52NoNo078
39R:R:L163 R:R:R159 11.08672.43NoYes265
40R:R:L147 R:R:Y143 22.46672.34NoNo068
41R:R:L147 R:R:L227 21.16861.38NoNo066
42R:R:L227 R:R:R231 19.96093.64NoYes067
43R:R:M146 R:R:R231 16.03232.48YesYes087
44R:R:M146 R:R:V228 12.06453.04YesNo088
45R:R:F118 R:R:I179 10.77862.51YesNo065
46L:L:?1 R:R:L276 22.03649.17YesYes106
47R:R:D279 R:R:L276 14.8494.07YesYes146
48R:R:D279 R:R:L290 13.4144.07YesYes143
49R:R:L254 R:R:V228 10.73464.47NoNo088
50L:L:?1 R:R:E121 17.27178.77YesYes105
51R:R:E121 R:R:W117 13.54616.36YesYes159
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y29 6.21 1 Yes Yes 0 7 0 1
L:L:?1 R:R:K34 8.4 1 Yes No 0 6 0 1
L:L:?1 R:R:E121 8.77 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M124 3.74 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F125 16.94 1 Yes No 0 5 0 1
L:L:?1 R:R:L128 5.5 1 Yes No 0 6 0 1
L:L:?1 R:R:S129 7.95 1 Yes No 0 6 0 1
L:L:?1 R:R:V132 3.95 1 Yes No 0 7 0 1
L:L:?1 R:R:L195 8.25 1 Yes Yes 0 3 0 1
L:L:?1 R:R:V209 2.96 1 Yes No 0 5 0 1
L:L:?1 R:R:F210 12.1 1 Yes No 0 7 0 1
L:L:?1 R:R:W269 4.53 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L272 6.42 1 Yes No 0 6 0 1
L:L:?1 R:R:L276 9.17 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L297 8.25 1 Yes No 0 5 0 1
R:R:K34 R:R:Y29 4.78 1 No Yes 6 7 1 1
R:R:T109 R:R:Y29 3.75 0 No Yes 5 7 2 1
R:R:W117 R:R:Y29 2.89 1 Yes Yes 9 7 2 1
R:R:P196 R:R:Y29 5.56 0 No Yes 3 7 2 1
R:R:M124 R:R:Y98 3.59 1 Yes Yes 6 6 1 2
R:R:L297 R:R:Y98 3.52 1 No Yes 5 6 1 2
R:R:M124 R:R:N101 7.01 1 Yes No 6 5 1 2
R:R:E121 R:R:W117 16.36 1 Yes Yes 5 9 1 2
R:R:L195 R:R:W117 4.56 1 Yes Yes 3 9 1 2
R:R:W117 R:R:Y198 3.86 1 Yes Yes 9 4 2 2
R:R:E121 R:R:L195 2.65 1 Yes Yes 5 3 1 1
R:R:E121 R:R:Y198 5.61 1 Yes Yes 5 4 1 2
R:R:L297 R:R:M124 2.83 1 No Yes 5 6 1 1
R:R:F125 R:R:Y202 5.16 0 No Yes 5 7 1 2
R:R:L128 R:R:W269 4.56 1 No Yes 6 8 1 1
R:R:L213 R:R:V132 2.98 0 No No 8 7 2 1
R:R:L195 R:R:V194 4.47 1 Yes Yes 3 4 1 2
R:R:D279 R:R:V194 4.38 1 Yes Yes 4 4 2 2
R:R:L195 R:R:Y198 5.86 1 Yes Yes 3 4 1 2
R:R:Y198 R:R:Y202 4.96 1 Yes Yes 4 7 2 2
R:R:I203 R:R:L276 4.28 1 Yes Yes 6 6 2 1
R:R:D279 R:R:I203 2.8 1 Yes Yes 4 6 2 2
R:R:F273 R:R:T207 5.19 0 Yes Yes 6 5 2 2
R:R:L276 R:R:T207 4.42 1 Yes Yes 6 5 1 2
R:R:F210 R:R:W269 9.02 1 No Yes 7 8 1 1
R:R:F210 R:R:F273 6.43 1 No Yes 7 6 1 2
R:R:F265 R:R:W269 5.01 0 No Yes 9 8 2 1
R:R:N303 R:R:W269 7.91 0 No Yes 9 8 2 1
R:R:L272 R:R:L276 2.77 1 No Yes 6 6 1 1
R:R:D279 R:R:L276 4.07 1 Yes Yes 4 6 2 1
R:R:A300 R:R:L272 1.58 0 No No 7 6 2 1
R:R:L35 R:R:Y29 1.17 0 No Yes 6 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EVY_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.52
Number of Linked Nodes 269
Number of Links 301
Number of Hubs 39
Number of Links mediated by Hubs 149
Number of Communities 4
Number of Nodes involved in Communities 47
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 52
Number Of Links MetaPath 51
Number of Shortest Paths 64583
Length Of Smallest Path 3
Average Path Length 13.5942
Length of Longest Path 31
Minimum Path Strength 1.225
Average Path Strength 5.2413
Maximum Path Strength 17.525
Minimum Path Correlation 0.7
Average Path Correlation 0.937903
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 56.8154
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.0964
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNAG
PDB ResiduesH:H:?1
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetylglucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

CodeJ8C
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ8C
NameSiponimod
Synonyms
  • Siponimod fumarate
  • Siponimod
Identifier
FormulaC29 H35 F3 N2 O3
Molecular Weight516.595
SMILES
PubChem72959169
Formal Charge0
Total Atoms72
Total Chiral Atoms0
Total Bonds75
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21453
Sequence
>7EVY_nogp_Chain_R
YDIIVRHYN YTGKLTSVV FILICCFII LENIFVLLT IWKTKKFHR 
PMYYFIGNL ALSDLLAGV AYTANLLLS GATTYKLTP AQWFLREGS 
MFVALSASV FSLLAIAIE RYITMLKMK LHNGSNNFR LFLLISACW 
VISLILGGL PIMGWNCIS ALSSCSTVL PLYHKHYIL FCTTVFTLL 
LLSIVILYC RIYSLVRTR SRRLTFRKN ISEKSLALL KTVIIVLSV 
FIACWAPLF ILLLLDVGC KVKTCDILF RAEYFLVLA VLNSGTNPI 
IYTLTNKEM RRAFIRI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8G94ALipidLysophospholipidS1P1Homo sapiens-CD69Gi1/β1/γ23.152023-04-19doi.org/10.7554/eLife.88204
8G94 (No Gprot) ALipidLysophospholipidS1P1Homo sapiens-CD693.152023-04-19doi.org/10.7554/eLife.88204
7EVYALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVY (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.982021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZALipidLysophospholipidS1P1Homo sapiensCenerimod-Gi1/β1/γ23.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EVZ (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCenerimod-3.072021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0ALipidLysophospholipidS1P1Homo sapiensOzanimod-Gi1/β1/γ23.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW0 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensOzanimod-3.422021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7ALipidLysophospholipidS1P1Homo sapiensSEW2871-Gi1/β1/γ23.272021-09-29doi.org/10.1038/s41422-021-00566-x
7EW7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSEW2871-3.272021-09-29doi.org/10.1038/s41422-021-00566-x
7TD3ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ232022-02-09doi.org/10.1038/s41467-022-28417-2
7TD3 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-32022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4ALipidLysophospholipidS1P1Homo sapiensSiponimod-Gi1/β1/γ22.62022-02-09doi.org/10.1038/s41467-022-28417-2
7TD4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSiponimod-2.62022-02-09doi.org/10.1038/s41467-022-28417-2
7EO2ALipidLysophospholipidS1P1Homo sapiensFTY720-P-Gi1/β1/γ22.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO2 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensFTY720-P-2.892022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4ALipidLysophospholipidS1P1Homo sapiensBAF312-Gi1/β1/γ22.862022-01-05doi.org/10.1038/s41589-021-00930-3
7EO4 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensBAF312-2.862022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7ALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ23.42022-01-05doi.org/10.1038/s41589-021-00930-3
7WF7 (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-3.42022-01-05doi.org/10.1038/s41589-021-00930-3
7VIEALipidLysophospholipidS1P1Homo sapiensS1P-Gi1/β1/γ22.862022-09-28doi.org/10.1073/pnas.2117716119
7VIE (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS1P-2.862022-09-28doi.org/10.1073/pnas.2117716119
7VIFALipidLysophospholipidS1P1Homo sapiensS-FTY720-P-Gi1/β1/γ22.832022-09-28doi.org/10.1073/pnas.2117716119
7VIF (No Gprot) ALipidLysophospholipidS1P1Homo sapiensS-FTY720-P-2.832022-09-28doi.org/10.1073/pnas.2117716119
7VIGALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.892022-09-28doi.org/10.1073/pnas.2117716119
7VIG (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.892022-09-28doi.org/10.1073/pnas.2117716119
7VIHALipidLysophospholipidS1P1Homo sapiensCBP-307-Gi1/β1/γ22.982022-09-28doi.org/10.1073/pnas.2117716119
7VIH (No Gprot) ALipidLysophospholipidS1P1Homo sapiensCBP-307-2.982022-09-28doi.org/10.1073/pnas.2117716119
3V2WALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--3.352012-02-15doi.org/10.1126/science.1215904
3V2YALipidLysophospholipidS1P1Homo sapiensPubChem 51892645--2.82012-02-15doi.org/10.1126/science.1215904
8YICALipidLysophospholipidS1P1Homo sapiensSAR247799-Gi1/β1/γ23.472024-12-11To be published
8YIC (No Gprot) ALipidLysophospholipidS1P1Homo sapiensSAR247799-3.472024-12-11To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EVY_nogp.zip



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