Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 3.3740
2R:R:H562 15.362557
3R:R:F588 3.8075417
4R:R:R601 7.765418
5R:R:Y602 6.83143718
6R:R:H605 3.1025419
7R:R:N607 5.79429
8R:R:G628 1.9425437
9R:R:Y641 3.2875407
10R:R:F642 4.3325408
11R:R:F647 6.25409
12R:R:W649 9.376529
13R:R:E653 5.734519
14R:R:Y675 5.794508
15R:R:Y676 3.065428
16R:R:W680 6.8875428
17R:R:P683 2.85408
18R:R:Y698 5.7425479
19R:R:W705 7.968549
20R:R:P767 5.4125409
21R:R:I768 6.824518
22R:R:W773 9.0525409
23R:R:L794 2.06406
24R:R:L797 3.498507
25R:R:E812 5.0625418
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Q563 17.24213.22YesNo004
2R:R:L558 R:R:Q563 15.73999.32NoNo054
3R:R:H562 R:R:L558 11.062120.57YesNo575
4L:L:?1 R:R:F791 39.57041.96YesNo009
5R:R:F791 R:R:W773 36.80334.01NoYes099
6R:R:F647 R:R:W773 66.596414.03YesYes099
7R:R:F647 R:R:M650 55.21814.98YesNo099
8R:R:L608 R:R:M650 50.46124.24NoNo099
9R:R:L608 R:R:V612 48.0632.98NoNo098
10R:R:Q616 R:R:V612 33.3972.87NoNo088
11R:R:C574 R:R:Q616 18.25674.58NoNo088
12R:R:C574 R:R:L620 15.68724.76NoNo088
13R:R:L620 R:R:Y571 13.09132.34NoNo087
14L:L:?1 R:R:N795 38.6483.32YesNo009
15R:R:N795 R:R:W773 36.658315.82NoYes099
16L:L:?1 R:R:W705 87.264510.09YesYes409
17R:R:L639 R:R:W705 85.94022.28NoYes099
18R:R:L618 R:R:L639 86.4084.15NoNo079
19R:R:F642 R:R:L618 99.40052.44YesNo087
20R:R:F642 R:R:Y641 1002.06YesYes087
21R:R:W680 R:R:Y641 98.22772.89YesYes087
22R:R:W649 R:R:W680 98.912914.99YesYes298
23R:R:I604 R:R:W649 97.31195.87NoYes099
24R:R:E653 R:R:I604 68.05242.73YesNo099
25R:R:E653 R:R:I768 32.705210.93YesYes198
26R:R:I768 R:R:P767 34.47091.69YesYes089
27R:R:F801 R:R:P767 24.76617.22NoYes089
28R:R:F801 R:R:L797 11.15432.44NoYes087
29R:R:Q616 R:R:S577 13.104511.55NoNo089
30R:R:E653 R:R:H605 21.90672.46YesYes199
31R:R:F588 R:R:H605 25.36572.26YesYes179
32R:R:L581 R:R:V612 13.10452.98NoNo098
33R:R:F588 R:R:Y602 17.76916.19YesYes178
34R:R:I604 R:R:Y675 37.98926.04NoYes098
35R:R:H656 R:R:Y675 29.885411.98NoYes088
36R:R:H656 R:R:R601 25.20755.64NoYes088
37R:R:E812 R:R:R601 16.22745.82YesYes188
38R:R:E812 R:R:T596 16.49762.82YesNo089
39R:R:A816 R:R:T596 18.97481.68NoNo089
40R:R:A816 R:R:V594 17.12355.09NoNo088
41R:R:K820 R:R:V594 15.24583.04NoNo088
42R:R:K820 R:R:L591 11.59575.64NoNo088
43R:R:L625 R:R:M635 18.73112.83NoNo046
44R:R:E626 R:R:L625 17.24213.98NoNo024
45R:R:E626 R:R:P627 15.73991.57NoNo025
46R:R:G628 R:R:P627 11.06212.03YesNo375
47R:R:C687 R:R:Y641 11.02254.03NoYes087
48R:R:P683 R:R:Y641 17.69674.17YesYes087
49R:R:L644 R:R:P683 16.27361.64NoYes098
50R:R:S645 R:R:W680 12.10967.41NoYes088
51R:R:P683 R:R:S645 10.0543.56YesNo088
52R:R:E653 R:R:G654 27.61233.27YesNo199
53R:R:G654 R:R:L657 26.40661.71NoNo099
54R:R:L657 R:R:V661 20.4772.98NoNo099
55R:R:I662 R:R:V661 18.96823.07NoNo089
56R:R:I662 R:R:Y658 12.93989.67NoNo088
57R:R:N703 R:R:W705 17.242120.34NoYes079
58R:R:N702 R:R:N703 15.73998.17NoNo037
59R:R:N702 R:R:T700 14.22451.46NoNo034
60R:R:S707 R:R:T700 11.15433.2NoNo084
61R:R:F801 R:R:L794 12.70922.44NoYes086
62R:R:L618 R:R:M635 13.05184.24NoNo076
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Q563 3.22 4 Yes No 0 4 0 1
L:L:?1 R:R:L619 2.23 4 Yes No 0 9 0 1
L:L:?1 R:R:W705 10.09 4 Yes Yes 0 9 0 1
L:L:?1 R:R:F791 1.96 4 Yes No 0 9 0 1
L:L:?1 R:R:N795 3.32 4 Yes No 0 9 0 1
R:R:L558 R:R:Q563 9.32 5 No No 5 4 2 1
R:R:L619 R:R:W705 3.42 4 No Yes 9 9 1 1
R:R:S622 R:R:W705 3.71 0 No Yes 8 9 2 1
R:R:L639 R:R:W705 2.28 0 No Yes 9 9 2 1
R:R:N703 R:R:W705 20.34 0 No Yes 7 9 2 1
R:R:F791 R:R:W773 4.01 0 No Yes 9 9 1 2
R:R:N795 R:R:W773 15.82 0 No Yes 9 9 1 2
R:R:F791 R:R:G776 3.01 0 No No 9 9 1 2
R:R:N795 R:R:Q798 3.96 0 No No 9 9 1 2
L:L:?1 R:R:S570 1.21 4 Yes No 0 7 0 1
L:L:?1 R:R:E557 1.07 4 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8X9S_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.86
Number of Linked Nodes 228
Number of Links 238
Number of Hubs 25
Number of Links mediated by Hubs 94
Number of Communities 7
Number of Nodes involved in Communities 35
Number of Links involved in Communities 44
Path Summary
Number Of Nodes in MetaPath 63
Number Of Links MetaPath 62
Number of Shortest Paths 28982
Length Of Smallest Path 3
Average Path Length 14.4244
Length of Longest Path 33
Minimum Path Strength 1.14
Average Path Strength 5.22159
Maximum Path Strength 23.265
Minimum Path Correlation 0.7
Average Path Correlation 0.929927
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 48.1729
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.8808
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• cytoskeletal protein binding   • spectrin binding   • protein-containing complex binding   • protein binding   • binding   • enzyme binding   • GTPase binding   • phosphoric ester hydrolase activity   • alkylglycerophosphoethanolamine phosphodiesterase activity   • hydrolase activity, acting on ester bonds   • phosphoric diester hydrolase activity   • hydrolase activity   • catalytic activity   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity, acting on acid anhydrides   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye
Gene OntologyBiological Process• positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • response to decreased oxygen levels   • cellular response to stimulus   • response to stimulus   • cellular response to oxygen levels   • cellular response to hypoxia   • cellular response to decreased oxygen levels   • cellular response to chemical stimulus   • cellular response to stress   • response to hypoxia   • response to stress   • response to chemical   • response to oxygen levels   • response to abiotic stimulus   • cellular process   • cell population proliferation   • regulation of biological process   • regulation of cellular process   • signaling   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • signal transduction   • muscle cell apoptotic process   • striated muscle cell apoptotic process   • apoptotic process   • cell death   • programmed cell death   • cardiac muscle cell apoptotic process   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cellular anatomical structure   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cellular anatomical structure   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • photoreceptor inner segment   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • intracellular anatomical structure   • cytoplasm   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle   • ciliary membrane   • photoreceptor outer segment membrane   • bounding membrane of organelle   • plasma membrane region   • organelle membrane   • cell projection membrane   • synapse   • cell junction   • cell body   • protein binding   • binding   • G-protein beta-subunit binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • cellular process   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • cell surface receptor signaling pathway   • multicellular organismal process   • system process   • nervous system process   • neuromuscular process   • regulation of system process   • skeletal muscle contraction   • muscle contraction   • muscle system process   • regulation of muscle system process   • striated muscle contraction   • multicellular organismal movement   • musculoskeletal movement   • regulation of striated muscle contraction   • regulation of muscle contraction   • regulation of skeletal muscle contraction   • regulation of multicellular organismal process   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • nucleoplasm   • organelle lumen   • membraneless organelle   • supramolecular complex   • nuclear ribonucleoprotein granule   • nuclear lumen   • cytosol   • peptide hormone receptor binding   • corticotropin-releasing hormone receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • corticotropin-releasing hormone receptor 1 binding   • hormone receptor binding   • neuropeptide receptor binding   • mu-type opioid receptor binding   • opioid receptor binding   • beta-2 adrenergic receptor binding   • adrenergic receptor binding   • D1 dopamine receptor binding   • dopamine receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • ionotropic glutamate receptor binding   • glutamate receptor binding   • enzyme regulator activity   • cyclase regulator activity   • enzyme activator activity   • cyclase activator activity   • molecular function activator activity   • molecular function regulator activity   • adenylate cyclase regulator activity   • adenylate cyclase activator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • metal ion binding   • insulin-like growth factor receptor binding   • adenylate cyclase-activating adrenergic receptor signaling pathway   • adrenergic receptor signaling pathway   • sensory perception of chemical stimulus   • sensory perception
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeDHT
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeDHT
NameStanolone
Synonyms17beta-Hydroxy-5alpha-androstan-3-one
Identifier
FormulaC19 H30 O2
Molecular Weight290.44
SMILES
PubChem10635
Formal Charge0
Total Atoms51
Total Chiral Atoms7
Total Bonds54
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ6QNK2
Sequence
>8X9S_nogp_Chain_R
VVPLELARG HQVALSSIS YVGCSLSVL CLVATLVTF AVLSSVSTI 
RNQRYHIHA NLSFAVLVA QVLLLISFR LEPGTTPCQ VMAVLLHYF 
FLSAFAWML VEGLHLYSM VIKVFGSED SKHRYYYGM GWGFPLLIC 
IISLSFAMD SYGTSNNCW LSLASGAIW AFVAPALFV IVVNIGILI 
AVTRVISQI SADNSAFKL TAKAVAVLL PILGTSWVF GVLAVNGCA 
VVFQYMFAT LNSLQGLFI FLFHCLLNS EVRAAFKHK TKVWSLT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7WU2B2AdhesionAdhesionADGRD1Homo sapiens--Gs/β1/γ12.82022-04-27doi.org/10.1038/s41586-022-04580-w
7WU2 (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens--2.82022-04-27doi.org/10.1038/s41586-022-04580-w
7EPTB2AdhesionAdhesionADGRD1Homo sapiens--Gs/β1/γ232022-05-11doi.org/10.1038/s41586-022-04619-y
7EPT (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens--32022-05-11doi.org/10.1038/s41586-022-04619-y
8X9SB2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-chim(NtGi1-Gs)/β1/γ23.492025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9S (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-3.492025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9TB2AdhesionAdhesionADGRD1Homo sapiensAP503-chim(NtGi1-Gs)/β1/γ22.752025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9T (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiensAP503-2.752025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9UB2AdhesionAdhesionADGRD1Homo sapiensMetenolone-chim(NtGi1-Gs)/β1/γ22.882025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9U (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiensMetenolone-2.882025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV1B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-chim(NtGi1-Gs)/β1/γ22.982025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV1 (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-2.982025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV2B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-chim(NtGi1-Gs)/β1/γ23.532025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV2 (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-3.532025-02-12doi.org/10.1016/j.cell.2025.01.006
9V0UB2AdhesionAdhesionADGRD1Homo sapiens--chim(NtGi1-G13)/β1/γ23.512025-07-30doi.org/10.1016/j.bbrc.2025.152165
9V0U (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens--3.512025-07-30doi.org/10.1016/j.bbrc.2025.152165




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8X9S_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.