Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.42714720
2R:R:I569 2.35409
3R:R:L581 4.5175409
4R:R:T584 5.6175419
5R:R:Q600 10.525418
6R:R:R601 7.13418
7R:R:Y602 7.30875818
8R:R:I604 6.61519
9R:R:H605 7.448519
10R:R:L613 3.62448
11R:R:F623 4.9375426
12R:R:H640 6.12143729
13R:R:L644 5.886529
14R:R:F647 7.055409
15R:R:W649 8.72286719
16R:R:V652 6.0275418
17R:R:H656 7.238518
18R:R:K671 6.9525418
19R:R:Y675 7.68518
20R:R:M678 6.0575407
21R:R:W680 7.46667618
22R:R:P683 3.356508
23R:R:S697 2.624567
24R:R:Y698 5.65729
25R:R:W705 7.662529
26R:R:S707 2.865468
27R:R:F716 6.5525429
28R:R:L731 3.9175458
29R:R:L765 4.55459
30R:R:F801 3.715408
31R:R:F803 6.91519
32R:R:F805 3.4175408
33R:R:C807 5.6775418
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L619 22.50235.47YesNo209
2R:R:F623 R:R:L619 21.21610.96YesNo269
3R:R:F623 R:R:S570 36.97522.64YesNo067
4R:R:S570 R:R:S796 34.39583.26NoNo079
5R:R:A792 R:R:S796 25.0561.71NoNo089
6R:R:A792 R:R:I569 21.93411.62NoYes089
7R:R:A565 R:R:I569 12.55291.62NoYes069
8L:L:?1 R:R:W705 27.545913.51YesYes209
9R:R:F623 R:R:W705 21.69654.01YesYes269
10L:L:?1 R:R:H640 34.32173.63YesYes209
11R:R:H640 R:R:L644 48.30569YesYes299
12R:R:L644 R:R:P683 96.70943.28YesYes098
13R:R:P683 R:R:Y641 49.8644.17YesNo087
14R:R:W680 R:R:Y641 50.35999.65YesNo087
15R:R:W649 R:R:W680 10013.12YesYes198
16R:R:L608 R:R:W649 16.05193.42NoYes099
17R:R:L608 R:R:V612 15.27882.98NoNo098
18L:L:?1 R:R:F716 33.066410.32YesYes209
19R:R:F716 R:R:L644 46.55274.87YesYes299
20R:R:P683 R:R:S645 49.13043.56YesNo088
21R:R:S645 R:R:W680 49.25448.65NoYes088
22R:R:I604 R:R:W649 74.11757.05YesYes199
23R:R:E653 R:R:I604 56.386710.93NoYes199
24R:R:E653 R:R:H605 33.558913.54NoYes199
25R:R:H605 R:R:H806 26.214811.94YesNo199
26R:R:H806 R:R:P767 46.75243.05NoNo099
27R:R:F801 R:R:P767 44.19884.33YesNo089
28R:R:E653 R:R:I768 22.383513.66NoNo198
29R:R:H806 R:R:I768 21.808414.58NoNo198
30R:R:L581 R:R:V612 10.50562.98YesNo098
31R:R:H605 R:R:Y602 14.08383.27YesYes198
32R:R:H656 R:R:I604 16.37575.3YesYes189
33R:R:H656 R:R:R601 16.78723.39YesYes188
34R:R:R601 R:R:Y602 12.864611.32YesYes188
35R:R:I597 R:R:Y602 19.824714.51NoYes188
36R:R:A816 R:R:I597 13.29173.25NoNo188
37R:R:A816 R:R:L591 12.02264.73NoNo088
38R:R:K671 R:R:Y675 10.029.55YesYes188
39R:R:V652 R:R:W649 13.38647.36YesYes189
40R:R:H640 R:R:Y698 15.82465.44YesYes299
41R:R:Q633 R:R:Y698 12.62363.38NoYes059
42R:R:G699 R:R:Q633 11.6734.93NoNo085
43R:R:F647 R:R:F716 14.83115.36YesYes099
44R:R:F647 R:R:W773 10.843112.03YesNo099
45L:L:?1 R:R:F791 19.424.82YesNo009
46R:R:F791 R:R:N795 16.51869.67NoNo099
47R:R:M678 R:R:V652 11.50433.04YesYes078
48R:R:F801 R:R:F805 37.69673.22YesYes088
49R:R:F805 R:R:V764 34.04285.24YesNo088
50R:R:L765 R:R:V764 27.61992.98YesNo098
51R:R:G699 R:R:T700 10.71913.64NoNo084
52R:R:L731 R:R:L765 17.15914.15YesYes589
53R:R:N795 R:R:S772 21.24534.47NoNo099
54R:R:L794 R:R:S772 18.89834.5NoNo069
55R:R:F775 R:R:L794 14.1942.44NoNo086
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L619 5.47 2 Yes No 0 9 0 1
L:L:?1 R:R:H640 3.63 2 Yes Yes 0 9 0 1
L:L:?1 R:R:W705 13.51 2 Yes Yes 0 9 0 1
L:L:?1 R:R:L706 8.6 2 Yes No 0 9 0 1
L:L:?1 R:R:I713 5.64 2 Yes No 0 8 0 1
L:L:?1 R:R:F716 10.32 2 Yes Yes 0 9 0 1
L:L:?1 R:R:F791 4.82 2 Yes No 0 9 0 1
R:R:F623 R:R:L619 10.96 2 Yes No 6 9 2 1
R:R:L619 R:R:W705 3.42 2 No Yes 9 9 1 1
R:R:S622 R:R:W705 4.94 0 No Yes 8 9 2 1
R:R:F623 R:R:W705 4.01 2 Yes Yes 6 9 2 1
R:R:H640 R:R:L644 9 2 Yes Yes 9 9 1 2
R:R:C687 R:R:H640 5.9 0 No Yes 8 9 2 1
R:R:H640 R:R:Y698 5.44 2 Yes Yes 9 9 1 2
R:R:H640 R:R:L706 10.29 2 Yes No 9 9 1 1
R:R:F716 R:R:H640 5.66 2 Yes Yes 9 9 1 1
R:R:F716 R:R:L644 4.87 2 Yes Yes 9 9 1 2
R:R:F647 R:R:F716 5.36 0 Yes Yes 9 9 2 1
R:R:L706 R:R:Y698 9.38 2 No Yes 9 9 1 2
R:R:N703 R:R:W705 12.43 0 No Yes 7 9 2 1
R:R:F791 R:R:N795 9.67 0 No No 9 9 1 2
R:R:F791 R:R:G776 3.01 0 No No 9 9 1 2
R:R:A715 R:R:H640 2.93 0 No Yes 9 9 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8X9U_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 239
Number of Links 266
Number of Hubs 33
Number of Links mediated by Hubs 124
Number of Communities 6
Number of Nodes involved in Communities 50
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 56
Number Of Links MetaPath 55
Number of Shortest Paths 80636
Length Of Smallest Path 3
Average Path Length 15.9067
Length of Longest Path 31
Minimum Path Strength 1.385
Average Path Strength 6.2514
Maximum Path Strength 17.315
Minimum Path Correlation 0.7
Average Path Correlation 0.921739
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 37.7691
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.6048
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell surface receptor signaling pathway   • multicellular organismal process   • system process   • nervous system process   • neuromuscular process   • regulation of system process   • skeletal muscle contraction   • muscle contraction   • muscle system process   • regulation of muscle system process   • striated muscle contraction   • multicellular organismal movement   • musculoskeletal movement   • regulation of striated muscle contraction   • regulation of muscle contraction   • regulation of skeletal muscle contraction   • regulation of multicellular organismal process   • cellular anatomical structure   • membrane   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • nucleoplasm
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • nucleoplasm   • organelle lumen   • organelle   • membraneless organelle   • supramolecular complex   • nuclear ribonucleoprotein granule   • nuclear lumen   • cytoplasm   • cytosol   • cell periphery   • plasma membrane   • protein binding   • binding   • G-protein beta-subunit binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • cellular process   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • cytoskeletal protein binding   • spectrin binding   • protein-containing complex binding   • enzyme binding   • GTPase binding   • phosphoric ester hydrolase activity   • alkylglycerophosphoethanolamine phosphodiesterase activity   • hydrolase activity, acting on ester bonds   • phosphoric diester hydrolase activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • response to decreased oxygen levels   • cellular response to oxygen levels   • cellular response to hypoxia   • cellular response to decreased oxygen levels   • cellular response to stress   • response to hypoxia   • response to stress   • response to oxygen levels   • response to abiotic stimulus   • cell population proliferation   • phospholipase C-activating G protein-coupled receptor signaling pathway   • muscle cell apoptotic process   • striated muscle cell apoptotic process   • apoptotic process   • cell death   • programmed cell death   • cardiac muscle cell apoptotic process   • photoreceptor inner segment   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor outer segment   • photoreceptor cell cilium   • ciliary membrane   • photoreceptor outer segment membrane   • bounding membrane of organelle   • plasma membrane region   • organelle membrane   • cell projection membrane   • synapse   • cell junction   • cell body
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1L
Name[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide
Synonyms
Identifier
FormulaC24 H31 N9 O3
Molecular Weight493.561
SMILES
PubChem44129754
Formal Charge0
Total Atoms67
Total Chiral Atoms1
Total Bonds68
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ6QNK2
Sequence
>8X9U_nogp_Chain_R
HQVALSSIS YVGCSLSVL CLVATLVTF AVLSSVSTI RNQRYHIHA 
NLSFAVLVA QVLLLISFR LEPGTTPCQ VMAVLLHYF FLSAFAWML 
VEGLHLYSM VIKVFGSED SKHRYYYGM GWGFPLLIC IISLSFAMD 
SYGTSNNCW LSLASGAIW AFVAPALFV IVVNIGILI AVTRVISQI 
SADSAFKLT AKAVAVLLP ILGTSWVFG VLAVFQYMF ATLNSLQGL 
FIFLFHCLL NSEVRAAFK HKTKVWSLT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7WU2B2AdhesionAdhesionADGRD1Homo sapiens--Gs/β1/γ12.82022-04-27doi.org/10.1038/s41586-022-04580-w
7WU2 (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens--2.82022-04-27doi.org/10.1038/s41586-022-04580-w
7EPTB2AdhesionAdhesionADGRD1Homo sapiens--Gs/β1/γ232022-05-11doi.org/10.1038/s41586-022-04619-y
7EPT (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens--32022-05-11doi.org/10.1038/s41586-022-04619-y
8X9SB2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-chim(NtGi1-Gs)/β1/γ23.492025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9S (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-3.492025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9TB2AdhesionAdhesionADGRD1Homo sapiensAP503-chim(NtGi1-Gs)/β1/γ22.752025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9T (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiensAP503-2.752025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9UB2AdhesionAdhesionADGRD1Homo sapiensMetenolone-chim(NtGi1-Gs)/β1/γ22.882025-02-12doi.org/10.1016/j.cell.2025.01.006
8X9U (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiensMetenolone-2.882025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV1B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-chim(NtGi1-Gs)/β1/γ22.982025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV1 (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-2.982025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV2B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-chim(NtGi1-Gs)/β1/γ23.532025-02-12doi.org/10.1016/j.cell.2025.01.006
9IV2 (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens5α-DHT-3.532025-02-12doi.org/10.1016/j.cell.2025.01.006
9V0UB2AdhesionAdhesionADGRD1Homo sapiens--chim(NtGi1-G13)/β1/γ23.512025-07-30doi.org/10.1016/j.bbrc.2025.152165
9V0U (No Gprot) B2AdhesionAdhesionADGRD1Homo sapiens--3.512025-07-30doi.org/10.1016/j.bbrc.2025.152165




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