Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.61889910
2M:M:?1 8.81020
3R:R:Y45 6.338517
4R:R:I53 6.3625465
5R:R:M72 5.8075406
6R:R:Y76 5.072507
7R:R:H79 6.305489
8R:R:S81 7.4125419
9R:R:D84 7.6425419
10R:R:F87 7.282517
11R:R:L91 4.2425418
12R:R:W94 7.40286717
13R:R:W102 7.87571719
14R:R:F104 10.8125417
15R:R:L108 2.225415
16R:R:H113 7.145416
17R:R:Y116 8.88416
18R:R:T117 5.8525415
19R:R:Y121 6.17286717
20R:R:F129 6.44405
21R:R:R134 5.575409
22R:R:Y135 7.3275498
23R:R:I138 4.03408
24R:R:R148 8.1625406
25R:R:W161 4.3925409
26R:R:V177 4.875414
27R:R:R183 5.27413
28R:R:Y190 9.842514
29R:R:L194 6.4502
30R:R:W195 9.2715
31R:R:Y219 4.478508
32R:R:F248 7.20667619
33R:R:W252 9.15619
34R:R:Y255 7.6625407
35R:R:I259 5.4775405
36R:R:E288 7.17515
37R:R:F292 7.79417
38R:R:H294 7.23619
39R:R:N298 8.46419
40R:R:P299 5.488519
41R:R:Y302 12.0575479
42R:R:H315 5.7754104
43S:S:Y45 5.636527
44S:S:M63 3.618536
45S:S:M72 6.6725446
46S:S:Y76 5.08547
47S:S:H79 6.9025459
48S:S:S81 6.635439
49S:S:D84 6.118539
50S:S:F87 8.55507
51S:S:L91 5.1475428
52S:S:W94 8.56167627
53S:S:W102 6.35375829
54S:S:H113 7.0725426
55S:S:Y116 8.124526
56S:S:Y121 8.6925117
57S:S:S122 3.2325457
58S:S:F129 4.778545
59S:S:D133 8.05448
60S:S:R134 4.42509
61S:S:Y135 7.64254128
62S:S:R148 7.76546
63S:S:W161 4.9825459
64S:S:F174 8.6275424
65S:S:V177 3.83424
66S:S:R183 6.17423
67S:S:Y190 9.636524
68S:S:L194 5.63402
69S:S:W195 10.36625
70S:S:F199 5.988525
71S:S:M205 3.87404
72S:S:F248 7.56667639
73S:S:W252 8.86667639
74S:S:Y255 8.1425407
75S:S:I259 5.9525405
76S:S:V280 4.38254135
77S:S:E288 7.618525
78S:S:F292 6.9825427
79S:S:H294 6.305639
80S:S:N298 7.452539
81S:S:P299 5.488539
82S:S:Y302 9.23833639
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:H113 99.88953.89YesYes106
2R:R:H113 R:R:R188 97.180111.28YesNo165
3R:R:R188 R:R:Y190 1008.23NoYes154
4R:R:W195 R:R:Y190 97.410910.61YesYes154
5R:R:N192 R:R:W195 99.76335.65NoYes015
6R:R:L194 R:R:N192 99.68248.24YesNo021
7R:R:D193 R:R:L194 99.55625.43NoYes012
8R:R:D193 S:S:L194 99.52145.43NoYes012
9S:S:L194 S:S:N192 99.40895.49YesNo021
10S:S:N192 S:S:W195 99.28475.65NoYes015
11S:S:W195 S:S:Y190 97.468110.61YesYes254
12S:S:R188 S:S:Y190 98.727810.29NoYes254
13S:S:H113 S:S:R188 95.809311.28YesNo265
14M:M:?1 S:S:H113 97.86454.86YesYes206
15M:M:?1 S:S:Y116 60.90427.97YesYes206
16M:M:?1 S:S:E288 24.552611.02YesYes205
17L:L:?1 R:R:E288 36.355511.02YesYes105
18R:R:E288 R:R:Y255 39.38055.61YesYes057
19L:L:?1 R:R:W94 32.449516.35YesYes107
20R:R:W94 R:R:Y45 12.29149.65YesYes177
21R:R:L41 R:R:Y45 14.023210.55NoYes067
22R:R:L41 R:R:N37 12.4865.49NoNo063
23R:R:F87 R:R:W94 25.67884.01YesYes177
24R:R:F87 R:R:N119 29.833412.08YesNo178
25R:R:D84 R:R:N119 18.67686.73YesNo198
26R:R:C295 R:R:V88 21.1143.42NoNo096
27R:R:I53 R:R:V88 12.70376.14YesNo056
28R:R:H294 R:R:N119 10.91343.83YesNo198
29R:R:C295 R:R:H294 16.42038.85NoYes199
30L:L:?1 R:R:Y116 28.24312.4YesYes106
31R:R:L120 R:R:Y116 29.256111.72NoYes076
32R:R:L120 R:R:W252 29.04115.69NoYes079
33R:R:H294 R:R:W252 13.314413.75YesYes199
34R:R:W252 R:R:Y255 32.63496.75YesYes097
35R:R:D84 R:R:N56 14.00355.39YesNo199
36R:R:F248 R:R:W252 46.00399.02YesYes199
37R:R:F248 R:R:L127 45.88368.53YesNo098
38R:R:I245 R:R:L127 42.09064.28NoNo078
39R:R:I245 R:R:Y219 41.36083.63NoYes078
40R:R:T241 R:R:Y219 31.64934.99NoYes078
41R:R:R134 R:R:T241 30.15697.76YesNo097
42R:R:A137 R:R:R134 27.99974.15NoYes089
43R:R:A137 R:R:R148 27.24496.91NoYes086
44R:R:D133 R:R:R148 18.855614.29NoYes086
45R:R:D133 R:R:Y76 11.85883.45NoYes087
46L:L:?1 R:R:C186 10.62284.8YesNo109
47S:S:E288 S:S:Y255 26.20158.98YesYes057
48S:S:I259 S:S:Y255 14.633310.88YesYes057
49S:S:L41 S:S:Y45 11.04228.21NoYes067
50S:S:F87 S:S:Y116 48.20584.13YesYes076
51S:S:F87 S:S:N119 53.188715.71YesNo078
52S:S:D84 S:S:N119 47.20715.39YesNo398
53S:S:D84 S:S:L80 49.89155.43YesNo099
54S:S:L80 S:S:N298 49.56546.87NoYes099
55S:S:N298 S:S:Y302 48.79954.65YesYes399
56S:S:M63 S:S:Y302 46.2133.59YesYes369
57S:S:L78 S:S:M63 45.22942.83NoYes056
58S:S:L78 S:S:R70 44.87174.86NoNo056
59S:S:K75 S:S:R70 44.51274.95NoNo066
60S:S:K75 S:S:M72 43.06377.2NoYes066
61S:S:D133 S:S:M72 20.70779.7YesYes486
62S:S:D133 S:S:Y76 17.36453.45YesYes487
63S:S:F129 S:S:Y76 28.98598.25YesYes457
64S:S:F129 S:S:V160 21.23835.24YesNo057
65S:S:V156 S:S:V160 20.36843.21NoNo057
66S:S:H79 S:S:V156 18.6119.69YesNo595
67S:S:H79 S:S:W161 16.8767.41YesYes599
68S:S:V82 S:S:W161 10.71352.45NoYes059
69S:S:A152 S:S:M72 17.26454.83NoYes036
70S:S:A152 S:S:Y76 16.85165.34NoYes037
71S:S:L120 S:S:Y116 13.226314.07NoYes076
72S:S:L120 S:S:W252 13.01794.56NoYes079
73S:S:H294 S:S:W252 12.944310.58YesYes399
74S:S:W252 S:S:Y255 17.3737.72YesYes097
75S:S:F248 S:S:W252 14.979810.02YesYes399
76S:S:F248 S:S:L127 11.85499.74YesNo098
77S:S:C251 S:S:H294 11.24872.95NoYes089
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
M:M:?1 S:S:W94 18.94 2 Yes Yes 0 7 0 1
M:M:?1 S:S:D97 22.56 2 Yes No 0 5 0 1
M:M:?1 S:S:W102 3.44 2 Yes Yes 0 9 0 1
M:M:?1 S:S:H113 4.86 2 Yes Yes 0 6 0 1
M:M:?1 S:S:Y116 7.97 2 Yes Yes 0 6 0 1
M:M:?1 S:S:R183 6.43 2 Yes Yes 0 3 0 1
M:M:?1 S:S:C186 3.6 2 Yes No 0 9 0 1
M:M:?1 S:S:D187 7.18 2 Yes No 0 3 0 1
M:M:?1 S:S:E288 11.02 2 Yes Yes 0 5 0 1
S:S:E32 S:S:R30 3.49 0 No No 4 5 1 2
S:S:L91 S:S:Y45 3.52 2 Yes Yes 8 7 2 2
S:S:W94 S:S:Y45 9.65 2 Yes Yes 7 7 1 2
S:S:F292 S:S:Y45 4.13 2 Yes Yes 7 7 2 2
S:S:F87 S:S:L91 8.53 0 Yes Yes 7 8 2 2
S:S:F87 S:S:Y116 4.13 0 Yes Yes 7 6 2 1
S:S:F292 S:S:F87 11.79 2 Yes Yes 7 7 2 2
S:S:L91 S:S:W94 5.69 2 Yes Yes 8 7 2 1
S:S:W94 S:S:Y116 7.72 2 Yes Yes 7 6 1 1
S:S:E288 S:S:W94 4.36 2 Yes Yes 5 7 1 1
S:S:F292 S:S:W94 5.01 2 Yes Yes 7 7 2 1
S:S:D97 S:S:W102 6.7 2 No Yes 5 9 1 1
S:S:D97 S:S:R183 4.76 2 No Yes 5 3 1 1
S:S:N101 S:S:R183 7.23 0 No Yes 4 3 2 1
S:S:F104 S:S:W102 11.02 0 No Yes 7 9 2 1
S:S:C109 S:S:W102 3.92 2 No Yes 9 9 2 1
S:S:V112 S:S:W102 3.68 0 No Yes 5 9 2 1
S:S:V177 S:S:W102 3.68 2 Yes Yes 4 9 2 1
S:S:C186 S:S:W102 16.98 2 No Yes 9 9 1 1
S:S:C109 S:S:V177 3.42 2 No Yes 9 4 2 2
S:S:C109 S:S:C186 7.28 2 No No 9 9 2 1
S:S:D171 S:S:H113 6.3 2 No Yes 4 6 2 1
S:S:A175 S:S:H113 5.85 0 No Yes 4 6 2 1
S:S:H113 S:S:R188 11.28 2 Yes No 6 5 1 2
S:S:L120 S:S:Y116 14.07 0 No Yes 7 6 2 1
S:S:E288 S:S:Y116 6.73 2 Yes Yes 5 6 1 1
S:S:D171 S:S:R188 8.34 2 No No 4 5 2 2
S:S:I185 S:S:R183 6.26 0 No Yes 3 3 2 1
S:S:D187 S:S:F189 3.58 0 No No 3 3 1 2
S:S:E288 S:S:Y255 8.98 2 Yes Yes 5 7 1 2
S:S:E288 S:S:F292 7 2 Yes Yes 5 7 1 2
M:M:?1 S:S:E32 2 2 Yes No 0 4 0 1
S:S:G105 S:S:W102 1.41 0 No Yes 8 9 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:E32 5.01 1 Yes No 0 4 0 1
L:L:?1 R:R:W94 16.35 1 Yes Yes 0 7 0 1
L:L:?1 R:R:D97 19.49 1 Yes No 0 5 0 1
L:L:?1 R:R:H113 3.89 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y116 12.4 1 Yes Yes 0 6 0 1
L:L:?1 R:R:R183 6.43 1 Yes Yes 0 3 0 1
L:L:?1 R:R:C186 4.8 1 Yes No 0 9 0 1
L:L:?1 R:R:D187 7.18 1 Yes No 0 3 0 1
L:L:?1 R:R:E288 11.02 1 Yes Yes 0 5 0 1
R:R:E32 R:R:R30 3.49 0 No No 4 5 1 2
R:R:L91 R:R:Y45 4.69 1 Yes Yes 8 7 2 2
R:R:W94 R:R:Y45 9.65 1 Yes Yes 7 7 1 2
R:R:F292 R:R:Y45 4.13 1 Yes Yes 7 7 2 2
R:R:F87 R:R:L91 4.87 1 Yes Yes 7 8 2 2
R:R:F87 R:R:W94 4.01 1 Yes Yes 7 7 2 1
R:R:F292 R:R:F87 12.86 1 Yes Yes 7 7 2 2
R:R:L91 R:R:W94 4.56 1 Yes Yes 8 7 2 1
R:R:W94 R:R:Y116 5.79 1 Yes Yes 7 6 1 1
R:R:E288 R:R:W94 5.45 1 Yes Yes 5 7 1 1
R:R:F292 R:R:W94 6.01 1 Yes Yes 7 7 2 1
R:R:D97 R:R:W102 5.58 1 No Yes 5 9 1 2
R:R:D97 R:R:R183 3.57 1 No Yes 5 3 1 1
R:R:N101 R:R:R183 4.82 0 No Yes 4 3 2 1
R:R:C109 R:R:W102 3.92 1 No Yes 9 9 2 2
R:R:C186 R:R:W102 16.98 1 No Yes 9 9 1 2
R:R:C109 R:R:C186 7.28 1 No No 9 9 2 1
R:R:D171 R:R:H113 7.56 1 No Yes 4 6 2 1
R:R:A175 R:R:H113 5.85 0 No Yes 4 6 2 1
R:R:H113 R:R:R188 11.28 1 Yes No 6 5 1 2
R:R:L120 R:R:Y116 11.72 0 No Yes 7 6 2 1
R:R:E288 R:R:Y116 5.61 1 Yes Yes 5 6 1 1
R:R:D171 R:R:R188 8.34 1 No No 4 5 2 2
R:R:I185 R:R:R183 6.26 0 No Yes 3 3 2 1
R:R:D187 R:R:F189 4.78 0 No No 3 3 1 2
R:R:E288 R:R:Y255 5.61 1 Yes Yes 5 7 1 2
R:R:E288 R:R:F292 8.16 1 Yes Yes 5 7 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 3ODU_poly
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.42
Number of Linked Nodes 561
Number of Links 627
Number of Hubs 82
Number of Links mediated by Hubs 317
Number of Communities 14
Number of Nodes involved in Communities 124
Number of Links involved in Communities 175
Path Summary
Number Of Nodes in MetaPath 78
Number Of Links MetaPath 77
Number of Shortest Paths 272361
Length Of Smallest Path 3
Average Path Length 23.5631
Length of Longest Path 58
Minimum Path Strength 1.38
Average Path Strength 7.091
Maximum Path Strength 22.58
Minimum Path Correlation 0.76
Average Path Correlation 0.985449
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 70.0279
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 53.6162
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• molecular transducer activity   • coreceptor activity   • signaling receptor activity   • cytoskeletal protein binding   • myosin light chain binding   • protein binding   • binding   • myosin binding   • small molecule binding   • C-C chemokine binding   • chemokine binding   • cytokine binding   • G protein-coupled chemoattractant receptor activity   • C-X-C motif chemokine 12 receptor activity   • C-X-C chemokine receptor activity   • chemokine receptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • cytokine receptor activity   • immune receptor activity   • ubiquitin protein ligase binding   • ubiquitin-like protein ligase binding   • enzyme binding   • virus receptor activity   • exogenous protein binding   • C-C chemokine receptor activity   • ubiquitin binding   • ubiquitin-like protein binding   • actin binding   • hydrolase activity, acting on glycosyl bonds   • peptidoglycan muralytic activity   • hydrolase activity, hydrolyzing O-glycosyl compounds   • lysozyme activity   • hydrolase activity   • catalytic activity   • developmental process   • multicellular organism development   • multicellular organismal process   • head development   • central nervous system development   • anatomical structure development   • animal organ development   • brain development   • nervous system development   • system development   • regulation of biological process   • cell adhesion   • regulation of cellular process   • regulation of cell adhesion
Gene OntologyBiological Process• developmental process   • multicellular organism development   • multicellular organismal process   • head development   • central nervous system development   • anatomical structure development   • animal organ development   • brain development   • nervous system development   • system development   • regulation of biological process   • cell adhesion   • regulation of cellular process   • regulation of cell adhesion   • biological regulation   • cellular process   • neuron recognition   • cellular developmental process   • cell development   • generation of neurons   • neurogenesis   • neuron differentiation   • cell differentiation   • neuron development   • cell recognition   • regulation of calcium ion transport   • regulation of localization   • transport   • regulation of transport   • regulation of monoatomic ion transport   • establishment of localization   • metal ion transport   • calcium ion transport   • localization   • monoatomic ion transport   • regulation of metal ion transport   • monoatomic cation transport   • response to stimulus   • response to mechanical stimulus   • response to abiotic stimulus   • response to external stimulus   • response to ultrasound   • chemotaxis   • positive regulation of locomotion   • regulation of response to external stimulus   • positive regulation of biological process   • regulation of chemotaxis   • positive regulation of chemotaxis   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • taxis   • regulation of response to stimulus   • response to chemical   • regulation of locomotion   • locomotion   • forebrain development   • telencephalon cell migration   • forebrain cell migration   • cell migration   • telencephalon development   • cell motility   • apoptotic process   • cell death   • programmed cell death   • epithelium development   • endothelium development   • tube development   • morphogenesis of an endothelium   • endothelial tube morphogenesis   • morphogenesis of an epithelium   • tissue development   • tissue morphogenesis   • anatomical structure morphogenesis   • tube morphogenesis   • epithelial tube morphogenesis   • regulation of viral process   • viral process   • membrane organization   • cellular component organization   • myelination   • myelin maintenance   • axon ensheathment   • ensheathment of neurons   • plasma membrane organization   • cellular component organization or biogenesis   • endomembrane system organization   • cell chemotaxis   • cellular response to stimulus   • dendritic cell chemotaxis   • leukocyte migration   • dendritic cell migration   • cellular response to chemical stimulus   • immune system process   • mononuclear cell migration   • leukocyte chemotaxis   • detection of external stimulus   • system process   • detection of stimulus involved in sensory perception of pain   • nervous system process   • sensory perception of temperature stimulus   • sensory perception of pain   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of abiotic stimulus   • detection of stimulus   • sensory perception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • detection of temperature stimulus involved in sensory perception of pain   • response to decreased oxygen levels   • response to hypoxia   • response to stress   • response to oxygen levels   • cellular response to xenobiotic stimulus   • response to xenobiotic stimulus   • epithelial cell development   • epithelial cell differentiation   • regulation of growth   • developmental growth   • cell projection organization   • neuron projection development   • regulation of cell morphogenesis   • positive regulation of developmental process   • cell projection morphogenesis   • neuron projection morphogenesis   • positive regulation of developmental growth   • developmental growth involved in morphogenesis   • positive regulation of dendrite extension   • regulation of cellular component organization   • regulation of developmental process   • plasma membrane bounded cell projection morphogenesis   • cell growth   • cell morphogenesis   • dendrite extension   • positive regulation of cellular process   • regulation of anatomical structure morphogenesis   • neuron projection extension   • regulation of developmental growth   • plasma membrane bounded cell projection organization   • developmental cell growth   • growth   • regulation of dendrite extension   • positive regulation of cell growth   • regulation of cell growth   • positive regulation of growth   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • detection of mechanical stimulus involved in sensory perception of pain   • detection of mechanical stimulus involved in sensory perception   • sensory perception of mechanical stimulus   • detection of mechanical stimulus   • immune response   • cell surface receptor signaling pathway   • chemokine (C-X-C motif) ligand 12 signaling pathway   • signaling   • CXCL12-activated CXCR4 signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • cell communication   • response to peptide   • G protein-coupled receptor signaling pathway   • cellular response to cytokine stimulus   • signal transduction   • C-X-C chemokine receptor CXCR4 signaling pathway   • response to activity   • regulation of cell motility   • positive regulation of mesenchymal stem cell migration   • positive regulation of cell migration   • regulation of mesenchymal stem cell migration   • mesenchymal stem cell migration   • positive regulation of cell motility   • regulation of cell migration   • intracellular signal transduction   • calcium-mediated signaling   • intracellular signaling cassette   • endothelial cell differentiation   • angiogenesis   • regulation of vasculature development   • regulation of response to wounding   • positive regulation of vascular wound healing   • vascular wound healing   • regulation of response to stress   • regulation of multicellular organismal process   • response to wounding   • blood vessel development   • positive regulation of response to wounding   • wound healing   • regulation of multicellular organismal development   • blood vessel morphogenesis   • angiogenesis involved in wound healing   • positive regulation of angiogenesis   • vasculature development   • circulatory system development   • positive regulation of vasculature development   • positive regulation of wound healing   • regulation of angiogenesis   • regulation of wound healing   • anatomical structure formation involved in morphogenesis   • positive regulation of multicellular organismal process   • regulation of vascular wound healing   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of signal transduction   • positive regulation of macrophage migration inhibitory factor signaling pathway   • positive regulation of response to cytokine stimulus   • macrophage migration inhibitory factor signaling pathway   • regulation of signaling   • regulation of macrophage migration inhibitory factor signaling pathway   • regulation of cytokine-mediated signaling pathway   • regulation of response to cytokine stimulus   • regulation of cell communication   • positive regulation of cytokine-mediated signaling pathway   • positive regulation of signaling   • homeostatic process   • adaptive thermogenesis   • positive regulation of metabolic process   • multicellular organismal-level homeostasis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • positive regulation of cold-induced thermogenesis   • metabolic process   • regulation of metabolic process   • regulation of programmed cell death   • response to tacrolimus   • response to oxygen-containing compound   • response to nitrogen compound   • heart process   • circulatory system process   • cardiac muscle contraction   • heart contraction   • muscle contraction   • muscle system process   • blood circulation   • striated muscle contraction   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to external biotic stimulus   • response to virus   • response to biotic stimulus   • defense response   • inflammatory response   • neuron migration   • positive regulation of nervous system development   • regulation of neurogenesis   • regulation of cell differentiation   • regulation of gliogenesis   • positive regulation of gliogenesis   • regulation of cell development   • regulation of nervous system development   • gliogenesis   • positive regulation of cell differentiation   • positive regulation of neurogenesis   • positive regulation of oligodendrocyte differentiation   • positive regulation of cell development   • regulation of glial cell differentiation   • positive regulation of glial cell differentiation   • oligodendrocyte differentiation   • glial cell differentiation   • regulation of oligodendrocyte differentiation   • defense response to bacterium   • defense response to other organism   • response to bacterium   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process   • glycosaminoglycan metabolic process   • carbohydrate derivative metabolic process   • aminoglycan catabolic process   • macromolecule catabolic process   • glycosaminoglycan catabolic process   • aminoglycan metabolic process   • peptidoglycan metabolic process   • macromolecule metabolic process   • symbiont-mediated cytolysis of host cell   • viral life cycle   • disruption of cell in another organism   • cytolysis   • biological process involved in interaction with host   • biological process involved in symbiotic interaction   • viral release from host cell by cytolysis   • exit from host cell   • cytolysis in another organism   • viral release from host cell   • disruption of anatomical structure in another organism   • symbiont-mediated killing of host cell   • killing of cells of another organism   • cell killing   • cell wall organization or biogenesis   • cell wall macromolecule catabolic process   • cell wall macromolecule metabolic process   • cell periphery   • cellular anatomical structure   • cell surface   • membrane   • plasma membrane   • external side of plasma membrane   • side of membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space
Gene OntologyCellular Component• cell periphery   • cellular anatomical structure   • cell surface   • membrane   • plasma membrane   • external side of plasma membrane   • side of membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • cell leading edge   • intracellular anatomical structure   • cytoplasm   • anchoring junction   • cell junction   • intracellular organelle   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • lysosome   • protein-containing complex   • cytoplasmic vesicle   • intracellular vesicle   • early endosome   • endosome   • endomembrane system   • late endosome   • host cellular component   • host intracellular part   • host cell cytoplasm   • host cell part   • host intracellular region
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeITD
PDB ResiduesL:L:?1 M:M:?1
Environment DetailsOpen EMBL-EBI Page
CodeITD
Name(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate
Synonyms
Identifier
FormulaC21 H34 N4 S2
Molecular Weight406.651
SMILES
PubChem25147749
Formal Charge0
Total Atoms61
Total Chiral Atoms0
Total Bonds64
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP61073
Sequence
>3ODU_poly_Chain_R
PCFREENAN FNKIFLPTI YSIIFLTGI VGNGLVILV MGYQKKLRS 
MTDKYRLHL SVADLLFVI TLPFWAVDA VANWYFGNF LCKAVHVIY 
TVNLYSSVW ILAFISLDR YLAIVHATN SQRPRKLLA EKVVYVGVW 
IPALLLTIP DFIFANVSE ADDRYICDR FYPNDLWVV VFQFQHIMV 
GLILPGIVI LSCYCIIIS KLSHSKGHQ KRKALKTTV ILILAFFAC 
WLPYYIGIS IDSFILLEI IKQGCEFEN TVHKWISIT EALAFFHCC 
LNPILYAFL GAKFKTSAQ HALTSGRPL EVLFQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8YU7AProteinChemokineCXCR4Homo sapiens---3.012025-03-0510.1016/j.celrep.2025.115255
8YU7 (Multimeric) AProteinChemokineCXCR4Homo sapiens--3.012025-03-0510.1016/j.celrep.2025.115255
8K3ZAProteinChemokineCXCR4Homo sapiensCXCL12-Gi1/β1/γ12.812024-07-17To be published
8K3Z (No Gprot) AProteinChemokineCXCR4Homo sapiensCXCL12-2.812024-07-17To be published
8U4TAProteinChemokineCXCR4Homo sapiensREGN7663-Fab--3.382024-03-13doi.org/10.1038/s41594-024-01397-1
8U4T (Multimeric) AProteinChemokineCXCR4Homo sapiensREGN7663-Fab-3.382024-03-13doi.org/10.1038/s41594-024-01397-1
8U4SAProteinChemokineCXCR4Homo sapiensREGN7663-Fab--3.352024-03-13doi.org/10.1038/s41594-024-01397-1
8U4S (Multimeric) AProteinChemokineCXCR4Homo sapiensREGN7663-Fab-3.352024-03-13doi.org/10.1038/s41594-024-01397-1
8U4RAProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterol-3.12024-03-1310.1101/2024.02.09.579708
8U4QAProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterolGi1/β1/γ23.362024-03-1310.1101/2024.02.09.579708
8U4Q (No Gprot) AProteinChemokineCXCR4Homo sapiensREGN7663-FabCholesterol3.362024-03-1310.1101/2024.02.09.579708
8U4PAProteinChemokineCXCR4Homo sapiensAMD3100CholesterolGi1/β1/γ23.152024-03-1310.1101/2024.02.09.579708
8U4P (No Gprot) AProteinChemokineCXCR4Homo sapiensAMD3100Cholesterol3.152024-03-1310.1101/2024.02.09.579708
8U4OAProteinChemokineCXCR4Homo sapiensCXCL12CholesterolGi1/β1/γ23.292024-03-1310.1101/2024.02.09.579708
8U4O (No Gprot) AProteinChemokineCXCR4Homo sapiensCXCL12Cholesterol3.292024-03-1310.1101/2024.02.09.579708
8U4NAProteinChemokineCXCR4Homo sapiens-CholesterolGi1/β1/γ22.722024-03-1310.1101/2024.02.09.579708
8U4N (No Gprot) AProteinChemokineCXCR4Homo sapiens-Cholesterol2.722024-03-1310.1101/2024.02.09.579708
8ZPNAProteinChemokineCXCR4Homo sapiensAMD3100Cholesterol-3.312025-02-26To be published
8ZPMAProteinChemokineCXCR4Homo sapiensAMD070Cholesterol-3.22025-02-26To be published
8ZPLAProteinChemokineCXCR4Homo sapiensHF51116Cholesterol-3.012025-02-26To be published
4RWSAProteinChemokineCXCR4Homo sapiensvMIP-II--3.12015-02-1110.1126/science.1261064
3OE9AProteinChemokineCXCR4Homo sapiensIT1t--3.12010-10-2710.1126/science.1194396
3OE9 (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-3.12010-10-2710.1126/science.1194396
3OE8AProteinChemokineCXCR4Homo sapiensIT1t--3.12010-10-2710.1126/science.1194396
3OE8 (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-3.12010-10-2710.1126/science.1194396
3OE6AProteinChemokineCXCR4Homo sapiensIT1t--3.22010-10-2710.1126/science.1194396
3OE0AProteinChemokineCXCR4Homo sapiensCVX15--2.92010-10-2710.1126/science.1194396
3ODUAProteinChemokineCXCR4Homo sapiensIT1t--2.52010-10-2710.1126/science.1194396
3ODU (Multimeric) AProteinChemokineCXCR4Homo sapiensIT1t-2.52010-10-2710.1126/science.1194396




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 3ODU_poly.zip



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