Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.055810
2R:R:L25 5.1477
3R:R:N36 6.0025409
4R:R:L49 5.01407
5R:R:N54 7.8575488
6R:R:F56 6.026538
7R:R:L60 6.86429
8R:R:D64 7.312529
9R:R:L72 5.022507
10R:R:W84 8.24748
11R:R:F86 6.4725446
12R:R:M100 4.9625455
13R:R:F110 7.6375407
14R:R:Y117 10.2475407
15R:R:Y126 6.048537
16R:R:F151 6.784553
17R:R:I154 6.2625404
18R:R:R161 4.6125401
19R:R:Y182 6.492515
20R:R:D186 7.4375414
21R:R:T190 6.63405
22R:R:F191 9.992598
23R:R:M198 6.11408
24R:R:Y202 4.64509
25R:R:F206 4.856505
26R:R:I227 4.044105
27R:R:W247 8.78167608
28R:R:Y250 8.67516
29R:R:F251 7.592507
30R:R:F254 6.74667614
31R:R:R257 10.0825464
32R:R:I265 4.475401
33R:R:Y278 8.94333616
34R:R:N284 8.8725429
35R:R:Y288 5.964529
36R:R:F295 6.042508
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y278 60.62724.41YesYes106
2R:R:W275 R:R:Y278 21.111512.54NoYes056
3R:R:L25 R:R:W275 14.125510.25YesNo075
4R:R:L72 R:R:Y278 26.02598.21YesYes076
5R:R:L72 R:R:T32 16.7224.42YesNo078
6L:L:?1 R:R:C102 18.404210.46YesNo007
7R:R:C102 R:R:W247 18.44355.22NoYes078
8R:R:N280 R:R:W247 10010.17NoYes098
9R:R:N280 R:R:N284 96.08919.54NoYes099
10R:R:D64 R:R:N284 48.42676.73YesYes299
11R:R:D64 R:R:N36 60.176.73YesYes099
12L:L:?1 R:R:Y250 18.700722.07YesYes106
13R:R:W247 R:R:Y250 56.2526.75YesYes086
14L:L:?1 R:R:F251 50.34824.59YesYes007
15R:R:F251 R:R:W247 27.43318.02YesYes078
16R:R:A61 R:R:N36 48.30893.13NoYes099
17R:R:A61 R:R:V39 45.59453.39NoNo099
18R:R:A289 R:R:V39 44.22663.39NoNo079
19R:R:A289 R:R:F295 42.85155.55NoYes078
20R:R:F295 R:R:N54 22.979413.29YesYes088
21R:R:L49 R:R:N54 18.51142.75YesYes078
22R:R:L60 R:R:N284 47.355310.98YesYes299
23R:R:L60 R:R:N108 63.13085.49YesNo098
24R:R:N108 R:R:S59 27.96178.94NoNo089
25R:R:L139 R:R:S59 26.8017.51NoNo079
26R:R:F56 R:R:L139 25.65454.87YesNo087
27R:R:F56 R:R:V135 34.84057.87YesNo087
28R:R:L52 R:R:V135 29.91187.45NoNo067
29R:R:I142 R:R:N108 34.20484.25NoNo068
30R:R:I142 R:R:M111 28.4764.37NoNo066
31R:R:F56 R:R:M111 26.06887.46YesNo386
32R:R:L52 R:R:P132 27.43678.21NoNo062
33R:R:D115 R:R:F56 15.08275.97NoYes388
34R:R:L109 R:R:N284 14.01848.24NoYes289
35L:L:?1 R:R:D186 13.04697.66YesYes104
36R:R:D186 R:R:Y182 18.572110.34YesYes145
37R:R:N159 R:R:Y182 34.77628.14NoYes055
38R:R:I154 R:R:N159 29.16188.5YesNo045
39R:R:I154 R:R:S96 23.72947.74YesNo044
40R:R:F151 R:R:S96 20.611511.89YesNo534
41R:R:F151 R:R:M100 14.39694.98YesYes535
42L:L:?1 R:R:F254 19.81865.73YesYes104
43R:R:F254 R:R:Y182 26.22594.13YesYes145
44R:R:S75 R:R:Y278 28.92257.63NoYes066
45R:R:S75 R:R:Y94 26.77956.36NoNo065
46R:R:W84 R:R:Y94 24.76169.65YesNo085
47R:R:F251 R:R:T190 10.86825.19YesYes075
48R:R:L109 R:R:Y288 28.14037.03NoYes289
49R:R:F191 R:R:F251 45.490917.15YesYes087
50R:R:F191 R:R:F243 38.38717.5YesNo989
51R:R:F243 R:R:M198 38.07287.46NoYes098
52R:R:M198 R:R:S113 19.73647.67YesNo089
53R:R:S113 R:R:Y202 19.67575.09NoYes099
54R:R:M198 R:R:M240 20.43644.33YesNo088
55R:R:M240 R:R:Y202 20.3158.38NoYes089
56R:R:D115 R:R:Y126 10.153910.34NoYes387
57R:R:I205 R:R:Y202 24.10442.42NoYes089
58R:R:I205 R:R:Y117 12.23263.63NoYes087
59R:R:I205 R:R:V120 10.10046.14NoNo088
60R:R:P132 R:R:T131 24.95455.25NoNo028
61R:R:R134 R:R:T131 14.95416.47NoNo058
62R:R:L129 R:R:R134 12.43622.43NoNo045
63R:R:F254 R:R:V178 20.261414.42YesNo041
64R:R:R257 R:R:V178 13.582610.46YesNo041
65R:R:E270 R:R:R257 10.99689.3NoYes644
66R:R:L236 R:R:Y202 20.24723.52NoYes079
67R:R:V239 R:R:Y288 22.14363.79NoYes089
68R:R:V239 R:R:Y202 21.3153.79NoYes089
69R:R:F206 R:R:L236 18.25423.65YesNo057
70R:R:L274 R:R:Y250 15.58633.52NoYes056
71R:R:L274 R:R:Y278 14.75779.38NoYes056
72R:R:E270 R:R:I265 10.28254.1NoYes041
73R:R:F295 R:R:N292 10.79324.83YesNo088
74R:R:F254 R:R:Y250 23.40087.22YesYes146
75R:R:D64 R:R:L60 15.56485.43YesYes299
76R:R:L109 R:R:L60 15.36485.54NoYes289
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D98 11.5 1 Yes No 0 5 0 1
L:L:?1 R:R:V99 14.02 1 Yes No 0 4 0 1
L:L:?1 R:R:C102 10.46 1 Yes No 0 7 0 1
L:L:?1 R:R:D186 7.66 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y250 22.07 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F251 4.59 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F254 5.73 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y278 4.41 1 Yes Yes 0 6 0 1
R:R:D98 R:R:V71 4.38 1 No No 5 6 1 2
R:R:L72 R:R:Y278 8.21 0 Yes Yes 7 6 2 1
R:R:S75 R:R:Y278 7.63 0 No Yes 6 6 2 1
R:R:D98 R:R:Y278 11.49 1 No Yes 5 6 1 1
R:R:C102 R:R:W247 5.22 0 No Yes 7 8 1 2
R:R:F254 R:R:V178 14.42 1 Yes No 4 1 1 2
R:R:D186 R:R:Y182 10.34 1 Yes Yes 4 5 1 2
R:R:F254 R:R:Y182 4.13 1 Yes Yes 4 5 1 2
R:R:D186 R:R:T190 5.78 1 Yes Yes 4 5 1 2
R:R:D186 R:R:F254 5.97 1 Yes Yes 4 4 1 1
R:R:F251 R:R:T190 5.19 0 Yes Yes 7 5 1 2
R:R:F191 R:R:F251 17.15 9 Yes Yes 8 7 2 1
R:R:W247 R:R:Y250 6.75 0 Yes Yes 8 6 2 1
R:R:F251 R:R:W247 8.02 0 Yes Yes 7 8 1 2
R:R:F254 R:R:Y250 7.22 1 Yes Yes 4 6 1 1
R:R:V273 R:R:Y250 3.79 0 No Yes 5 6 2 1
R:R:L274 R:R:Y250 3.52 0 No Yes 5 6 2 1
R:R:L274 R:R:Y278 9.38 0 No Yes 5 6 2 1
R:R:W275 R:R:Y278 12.54 0 No Yes 5 6 2 1
R:R:V176 R:R:V99 3.21 0 No No 5 4 2 1
R:R:F254 R:R:G183 3.01 1 Yes No 4 5 1 2
R:R:F251 R:R:G187 3.01 0 Yes No 7 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8YN3_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 263
Number of Links 291
Number of Hubs 36
Number of Links mediated by Hubs 146
Number of Communities 10
Number of Nodes involved in Communities 47
Number of Links involved in Communities 57
Path Summary
Number Of Nodes in MetaPath 77
Number Of Links MetaPath 76
Number of Shortest Paths 60362
Length Of Smallest Path 3
Average Path Length 13.5843
Length of Longest Path 29
Minimum Path Strength 1.215
Average Path Strength 6.75453
Maximum Path Strength 18.045
Minimum Path Correlation 0.7
Average Path Correlation 0.934254
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 53.1594
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.4243
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHSM
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHSM
NameHistamine
Synonyms1H-Imidazole-4-ethanamine
Identifier
FormulaC5 H9 N3
Molecular Weight111.145
SMILES
PubChem774
Formal Charge0
Total Atoms17
Total Chiral Atoms0
Total Bonds17
Total Aromatic Bonds5

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25021
Sequence
>8YN3_nogp_Chain_R
STACKITIT VVLAVLILI TVAGNVVVC LAVGLNRRL RNLTNCFIV 
SLAITDLLL GLLVLPFSA IYQLSCKWS FGKVFCNIY TSLDVMLCT 
ASILNLFMI SLDRYCAVM DPLRYPVLV TPVRVAISL VLIWVISIT 
LSFLSIHLG WNSRTSKCK VQVNEVYGL VDGLVTFYL PLLIMCITY 
YRIFKVARD QAKRINHIS SWKAATIRE HKATVTLAA VMGAFIICW 
FPYFTAFVY RGLRGDDAI NEVLEAIVL WLGYANSAL NPILYAALN 
RDFRTGYQQ L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9H2XANucleotideAdenosineA2AHomo sapiensA1IR1Na-1.752025-06-18To be published
8YH2ANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2 (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YUTAAmineHistamineH2Homo sapiensAmthamine-Gs/β1/γ22.72024-06-05doi.org/10.1002/advs.202310120
8YUT (No Gprot) AAmineHistamineH2Homo sapiensAmthamine-2.72024-06-05doi.org/10.1002/advs.202310120
8POKAAmineHistamineH2Homo sapiensHistamine-Gs/β1/γ23.42024-03-06doi.org/10.1038/s41467-024-46096-z
8POK (No Gprot) AAmineHistamineH2Homo sapiensHistamine-3.42024-03-06doi.org/10.1038/s41467-024-46096-z
8YN3AAmineHistamineH2Homo sapiensHistamine-Gs/β1/γ22.562024-10-09doi.org/10.1038/s41467-024-52585-y
8YN3 (No Gprot) AAmineHistamineH2Homo sapiensHistamine-2.562024-10-09doi.org/10.1038/s41467-024-52585-y
8YN4AAmineHistamineH2Homo sapiensHistamine-chim(NtGi1L-Gs-CtGq)/β1/γ22.972024-10-09doi.org/10.1038/s41467-024-52585-y
8YN4 (No Gprot) AAmineHistamineH2Homo sapiensHistamine-2.972024-10-09doi.org/10.1038/s41467-024-52585-y
7UL3AAmineHistamineH2Homo sapiensFamotidine--32022-06-29doi.org/10.1038/s41594-022-00859-8
8H2GAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.012023-10-11doi.org/10.1038/s41467-023-42764-8
8H2G (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.012023-10-11doi.org/10.1038/s41467-023-42764-8
8WSTAPeptideMelanin Concentrating HormoneMCH2Homo sapiensPro-MCH-chim(NtGi1L-Gs-CtGq)/β1/γ22.42024-06-19doi.org/10.1038/s41421-024-00679-8
8WST (No Gprot) APeptideMelanin Concentrating HormoneMCH2Homo sapiensPro-MCH-2.42024-06-19doi.org/10.1038/s41421-024-00679-8
4RWDAPeptideOpioidδHomo sapiensDIPP-NH2Na-2.72015-01-14doi.org/10.1038/nsmb.2965
4RWAAPeptideOpioidδHomo sapiensDIPP-NH2--3.282015-01-14doi.org/10.1038/nsmb.2965
7SCGAPeptideOpioidμMus musculusFH210-Gi1/β1/γ232022-04-20doi.org/10.1002/anie.202200269
7SCG (No Gprot) APeptideOpioidμMus musculusFH210-32022-04-20doi.org/10.1002/anie.202200269
7F16B1PeptideParathyroid HormonePTH2Homo sapiensTIP39-Gs/β1/γ22.82021-08-18doi.org/10.1073/pnas.2101279118
7F16 (No Gprot) B1PeptideParathyroid HormonePTH2Homo sapiensTIP39-2.82021-08-18doi.org/10.1073/pnas.2101279118
9IXJAAmineHistamineH2Homo sapiensHistamine-Gs/β1/γ22.922025-07-30To be published
9IXJ (No Gprot) AAmineHistamineH2Homo sapiensHistamine-2.922025-07-30To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8YN3_nogp.zip



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