Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.86875810
2R:R:L25 5.6025417
3R:R:N46 6.0525405
4R:R:L60 7.8825429
5R:R:D64 7.854529
6R:R:L67 4.8175408
7R:R:L72 4.125617
8R:R:W84 10.5867638
9R:R:F86 7.766536
10R:R:D98 9.0275415
11R:R:M100 4.9625455
12R:R:C102 6.23417
13R:R:M111 4.4325406
14R:R:Y126 5.834507
15R:R:F151 6.7825453
16R:R:V178 5.898511
17R:R:Y182 6.445615
18R:R:D186 8.045414
19R:R:T190 6.2375405
20R:R:F191 9.282518
21R:R:Y202 4.855609
22R:R:W247 9.354508
23R:R:Y250 8.42516
24R:R:F251 5.79617
25R:R:F254 6.558514
26R:R:W275 6.595415
27R:R:Y278 7.56429716
28R:R:N284 8.53429
29R:R:L287 2.0675428
30R:R:Y288 5.774529
31R:R:F295 5.6325808
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y278 35.7024.41YesYes106
2R:R:W275 R:R:Y278 18.452410.61YesYes156
3R:R:L25 R:R:W275 12.89297.97YesYes175
4R:R:L72 R:R:Y278 21.77825.86YesYes176
5R:R:L72 R:R:T32 13.4974.42YesNo078
6L:L:?1 R:R:C102 42.55868.96YesYes107
7R:R:C102 R:R:L67 24.92664.76YesYes078
8R:R:L67 R:R:S281 58.20634.5YesNo089
9R:R:D64 R:R:S281 58.544411.78YesNo099
10R:R:D64 R:R:N36 85.49976.73YesNo099
11R:R:L65 R:R:N36 10.49832.75NoNo079
12R:R:N36 R:R:P285 75.588911.4NoNo099
13R:R:P285 R:R:V39 68.763.53NoNo099
14R:R:A289 R:R:V39 63.5223.39NoNo079
15R:R:A289 R:R:F295 61.75382.77NoYes078
16R:R:F295 R:R:V43 12.51592.62YesNo087
17R:R:F295 R:R:L49 18.70187.31YesNo087
18R:R:L49 R:R:N46 10.49839.61NoYes075
19R:R:F295 R:R:N54 17.970212.08YesNo088
20R:R:N54 R:R:T53 14.09015.85NoNo488
21R:R:C102 R:R:W247 26.64496.53YesYes078
22R:R:N280 R:R:W247 76.908110.17NoYes098
23R:R:N280 R:R:N284 74.50259.54NoYes099
24R:R:L109 R:R:N284 73.26095.49NoYes289
25R:R:L109 R:R:Y288 1007.03NoYes289
26R:R:I112 R:R:Y288 48.6177.25NoYes299
27R:R:F56 R:R:I112 50.87863.77NoNo089
28R:R:F56 R:R:V135 54.89729.18NoNo087
29R:R:L52 R:R:V135 51.73777.45NoNo067
30L:L:?1 R:R:F251 44.58183.44YesYes107
31R:R:F251 R:R:W247 47.95744.01YesYes078
32R:R:L52 R:R:P132 44.418.21NoNo062
33R:R:D64 R:R:L60 47.92978.14YesYes299
34R:R:L60 R:R:N108 36.06235.49YesNo098
35R:R:I142 R:R:N108 29.63254.25NoNo068
36R:R:I142 R:R:M111 24.19494.37NoYes066
37R:R:L60 R:R:N284 16.800612.36YesYes299
38L:L:?1 R:R:D186 26.53958.94YesYes104
39R:R:D186 R:R:T190 17.56555.78YesYes045
40R:R:T103 R:R:T190 13.05919.42NoYes065
41R:R:S146 R:R:T103 10.9754.8NoNo086
42R:R:F251 R:R:T190 17.63765.19YesYes075
43R:R:L101 R:R:L67 15.2325.54NoYes078
44R:R:L101 R:R:L66 13.32524.15NoNo077
45R:R:V71 R:R:Y278 26.1463.79NoYes166
46R:R:S75 R:R:Y278 27.85885.09NoYes066
47R:R:S75 R:R:Y94 25.99636.36NoNo065
48R:R:W84 R:R:Y94 24.139512.54YesNo085
49R:R:D186 R:R:Y182 37.575511.49YesYes145
50R:R:N159 R:R:Y182 21.65076.98NoYes055
51R:R:I154 R:R:N159 17.65989.91NoNo045
52L:L:?1 R:R:F254 46.37775.73YesYes104
53R:R:F254 R:R:Y182 32.83634.13YesYes145
54R:R:I154 R:R:S96 10.22127.74NoNo044
55R:R:L66 R:R:L70 11.45171.38NoNo075
56R:R:L114 R:R:M111 12.21662.83NoYes066
57R:R:R116 R:R:Y288 19.83817.2NoYes299
58R:R:F191 R:R:F251 43.523113.93YesYes187
59R:R:F191 R:R:F243 31.54488.57YesNo189
60R:R:F243 R:R:M198 31.06813.73NoNo098
61R:R:M198 R:R:S113 31.26776.13NoNo089
62R:R:S113 R:R:Y202 33.59573.82NoYes099
63R:R:R116 R:R:Y202 23.49657.2NoYes099
64R:R:T53 R:R:Y126 12.0672.5NoYes087
65R:R:S113 R:R:T201 15.85831.6NoNo097
66R:R:T201 R:R:Y117 13.24218.74NoNo077
67R:R:P132 R:R:T131 40.7355.25NoNo028
68R:R:R134 R:R:T131 25.90215.17NoNo058
69R:R:L129 R:R:R134 22.16622.43NoNo045
70R:R:L129 R:R:R125 15.13772.43NoNo045
71R:R:D122 R:R:R125 11.368519.06NoNo065
72R:R:S153 R:R:Y182 32.49827.63NoYes055
73R:R:S153 R:R:W158 24.83799.88NoNo054
74R:R:F254 R:R:V178 31.738811.8YesYes141
75R:R:R257 R:R:V178 28.97846.54NoYes041
76R:R:D262 R:R:R257 16.60664.76NoNo014
77R:R:D262 R:R:K175 10.261.38NoNo014
78R:R:N179 R:R:Y182 16.60114.65NoYes045
79R:R:L236 R:R:Y202 29.81543.52NoYes079
80R:R:V239 R:R:Y288 20.05995.05NoYes089
81R:R:V239 R:R:Y202 18.50783.79NoYes089
82R:R:F206 R:R:L236 27.35443.65NoNo057
83R:R:F206 R:R:R210 13.96268.55NoNo055
84R:R:F206 R:R:T233 10.89749.08NoNo056
85R:R:K214 R:R:R210 11.19123.71NoNo045
86R:R:V273 R:R:Y250 10.63693.79NoYes056
87R:R:I265 R:R:R257 10.77552.51NoNo014
88R:R:T131 R:R:V133 11.36853.17NoNo084
89R:R:N179 R:R:V181 12.4662.96NoNo044
90R:R:L287 R:R:Y288 13.52472.34YesYes289
91R:R:L152 R:R:W158 16.60112.28NoNo064
92R:R:L152 R:R:T148 12.4661.47NoNo064
93R:R:L67 R:R:V71 26.87774.47YesNo086
94R:R:F254 R:R:Y250 19.01785.16YesYes146
95R:R:D64 R:R:N284 39.26616.73YesYes299
96R:R:F251 R:R:Y250 23.28585.16YesYes176
97R:R:F56 R:R:M111 11.8127.46NoYes086
98R:R:L109 R:R:L60 29.33875.54NoYes289
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D98 11.5 1 Yes Yes 0 5 0 1
L:L:?1 R:R:V99 7.01 1 Yes No 0 4 0 1
L:L:?1 R:R:C102 8.96 1 Yes Yes 0 7 0 1
L:L:?1 R:R:D186 8.94 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y250 20.96 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F251 3.44 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F254 5.73 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y278 4.41 1 Yes Yes 0 6 0 1
R:R:L67 R:R:V71 4.47 0 Yes No 8 6 2 2
R:R:C102 R:R:L67 4.76 1 Yes Yes 7 8 1 2
R:R:D98 R:R:V71 7.3 1 Yes No 5 6 1 2
R:R:V71 R:R:Y278 3.79 1 No Yes 6 6 2 1
R:R:L72 R:R:W275 3.42 1 Yes Yes 7 5 2 2
R:R:L72 R:R:Y278 5.86 1 Yes Yes 7 6 2 1
R:R:S75 R:R:Y278 5.09 0 No Yes 6 6 2 1
R:R:C102 R:R:D98 4.67 1 Yes Yes 7 5 1 1
R:R:D98 R:R:Y278 12.64 1 Yes Yes 5 6 1 1
R:R:C102 R:R:W247 6.53 1 Yes Yes 7 8 1 2
R:R:V178 R:R:Y182 3.79 1 Yes Yes 1 5 2 2
R:R:F254 R:R:V178 11.8 1 Yes Yes 4 1 1 2
R:R:D186 R:R:Y182 11.49 1 Yes Yes 4 5 1 2
R:R:F254 R:R:Y182 4.13 1 Yes Yes 4 5 1 2
R:R:D186 R:R:T190 5.78 1 Yes Yes 4 5 1 2
R:R:D186 R:R:F254 5.97 1 Yes Yes 4 4 1 1
R:R:F251 R:R:T190 5.19 1 Yes Yes 7 5 1 2
R:R:F191 R:R:F251 13.93 1 Yes Yes 8 7 2 1
R:R:F251 R:R:W247 4.01 1 Yes Yes 7 8 1 2
R:R:F251 R:R:Y250 5.16 1 Yes Yes 7 6 1 1
R:R:F254 R:R:Y250 5.16 1 Yes Yes 4 6 1 1
R:R:V273 R:R:Y250 3.79 0 No Yes 5 6 2 1
R:R:L274 R:R:Y250 7.03 0 No Yes 5 6 2 1
R:R:L274 R:R:Y278 10.55 0 No Yes 5 6 2 1
R:R:W275 R:R:Y278 10.61 1 Yes Yes 5 6 2 1
R:R:V176 R:R:V99 3.21 0 No No 5 4 2 1
R:R:F251 R:R:G187 3.01 1 Yes No 7 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8YN4_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.28
Number of Linked Nodes 254
Number of Links 276
Number of Hubs 31
Number of Links mediated by Hubs 122
Number of Communities 5
Number of Nodes involved in Communities 41
Number of Links involved in Communities 56
Path Summary
Number Of Nodes in MetaPath 99
Number Of Links MetaPath 98
Number of Shortest Paths 53132
Length Of Smallest Path 3
Average Path Length 12.8193
Length of Longest Path 26
Minimum Path Strength 1.305
Average Path Strength 6.31176
Maximum Path Strength 16.23
Minimum Path Correlation 0.7
Average Path Correlation 0.922147
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 46.2222
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.0975
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHSM
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHSM
NameHistamine
Synonyms4-imidazoleethylamine
Identifier
FormulaC5 H9 N3
Molecular Weight111.145
SMILES
PubChem774
Formal Charge0
Total Atoms17
Total Chiral Atoms0
Total Bonds17
Total Aromatic Bonds5

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25021
Sequence
>8YN4_nogp_Chain_R
TACKITITV VLAVLILIT VAGNVVVCL AVGLNRRLR NLTNCFIVS 
LAITDLLLG LLVLPFSAI YQLSCKWSF GKVFCNIYT SLDVMLCTA 
SILNLFMIS LDRYCAVMD PLRYPVLVT PVRVAISLV LIWVISITL 
SFLSIHLGW NSRTSKCKV QVNEVYGLV DGLVTFYLP LLIMCITYY 
RIFKVARDQ AKRIREHKA TVTLAAVMG AFIICWFPY FTAFVYRGL 
RGDDAINEV LEAIVLWLG YANSALNPI LYAALNRDF RTGYQQL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8YH2ANucleotideAdenosineA3AHomo sapiensAdenosine-Gi1/β1/γ23.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YH2 (No Gprot) ANucleotideAdenosineA3AHomo sapiensAdenosine-3.272024-11-06doi.org/10.1038/s41467-024-53473-1
8YN4AAmineHistamineH2Homo sapiensHistamine-chim(NtGi1L-Gs-CtGq)/β1/γ22.972024-10-09doi.org/10.1038/s41467-024-52585-y
8YN4 (No Gprot) AAmineHistamineH2Homo sapiensHistamine-2.972024-10-09doi.org/10.1038/s41467-024-52585-y
8YN3AAmineHistamineH2Homo sapiensHistamine-Gs/β1/γ22.562024-10-09doi.org/10.1038/s41467-024-52585-y
8YN3 (No Gprot) AAmineHistamineH2Homo sapiensHistamine-2.562024-10-09doi.org/10.1038/s41467-024-52585-y
8WSTAPeptideMelanin Concentrating HormoneMCH2Homo sapiensPro-MCH-chim(NtGi1L-Gs-CtGq)/β1/γ22.42024-06-1910.1038/s41421-024-00679-8
8WST (No Gprot) APeptideMelanin Concentrating HormoneMCH2Homo sapiensPro-MCH-2.42024-06-1910.1038/s41421-024-00679-8
8YUTAAmineHistamineH2Homo sapiensAmthamine-Gs/β1/γ22.72024-06-0510.1002/advs.202310120
8YUT (No Gprot) AAmineHistamineH2Homo sapiensAmthamine-2.72024-06-0510.1002/advs.202310120
8POKAAmineHistamineH2Homo sapiensHistamine-Gs/β1/γ23.42024-03-0610.1038/s41467-024-46096-z
8POK (No Gprot) AAmineHistamineH2Homo sapiensHistamine-3.42024-03-0610.1038/s41467-024-46096-z
8H2GAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.012023-10-11To be published
8H2G (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.012023-10-11To be published
7UL3AAmineHistamineH2Homo sapiensFamotidine--32022-06-29doi.org/10.1038/s41594-022-00859-8
7SCGAPeptideOpioidμMus musculusFH210-Gi1/β1/γ232022-04-2010.1002/anie.202200269
7SCG (No Gprot) APeptideOpioidμMus musculusFH210-32022-04-2010.1002/anie.202200269
7F16B1PeptideParathyroid HormonePTH2Homo sapiensTIP39-Gs/β1/γ22.82021-08-1810.1073/pnas.2101279118
7F16 (No Gprot) B1PeptideParathyroid HormonePTH2Homo sapiensTIP39-2.82021-08-1810.1073/pnas.2101279118
4RWDAPeptideOpioidδHomo sapiensDIPP-NH2Na-2.72015-01-1410.1038/nsmb.2965
4RWAAPeptideOpioidδHomo sapiensDIPP-NH2--3.282015-01-1410.1038/nsmb.2965




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8YN4_nogp.zip



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