Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y34 7.52429716
2R:R:K39 9.125418
3R:R:I63 4.1508
4R:R:N67 5.3875409
5R:R:I74 3.2175407
6R:R:F80 8.698548
7R:R:P83 4.8825406
8R:R:Y85 8.09549
9R:R:L91 6.2025409
10R:R:D95 8.048509
11R:R:F96 6.12437
12R:R:Y102 8.255607
13R:R:L105 4.8325406
14R:R:W121 7.75619
15R:R:R124 4.83616
16R:R:Q125 11.9675414
17R:R:D129 6.4515
18R:R:S131 3.45406
19R:R:L132 5.105407
20R:R:V136 4.67518
21R:R:H147 7.7025467
22R:R:F151 10.69466
23R:R:V164 4.345407
24R:R:I189 10.1025423
25R:R:M198 6.43413
26R:R:Y202 7.45833614
27R:R:W210 7.802516
28R:R:F213 5.7325415
29R:R:N214 8.86517
30R:R:T217 5.0525417
31R:R:Y225 6.2325409
32R:R:F229 5.164586
33R:R:M253 5.28487
34R:R:F267 7.75333619
35R:R:I268 5.2075406
36R:R:W271 8.87857718
37R:R:L277 6.15414
38R:R:D281 7.68404
39R:R:V282 5.365405
40R:R:E293 6.532514
41R:R:F296 5.87515
42R:R:N303 7.5125419
43R:R:Y311 5.798559
44R:R:M318 5.648548
45L:L:?1 7.535621610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I189 R:R:L201 15.90342.85YesNo031
2R:R:F33 R:R:L201 20.122619.49NoNo061
3R:R:F32 R:R:F33 17.86824.29NoNo026
4R:R:F32 R:R:R36 13.34875.34NoNo023
5R:R:I192 R:R:R36 11.08377.52NoNo013
6R:R:L201 R:R:W121 37.896611.39NoYes019
7R:R:W121 R:R:Y34 21.18143.86YesYes196
8L:L:?1 R:R:Y34 26.89477.55YesYes106
9L:L:?1 R:R:Q125 32.908217.14YesYes104
10R:R:Q125 R:R:W121 20.476114.24YesYes149
11R:R:C60 R:R:Y102 11.52075.38NoYes067
12R:R:C60 R:R:F103 10.86524.19NoNo066
13R:R:L298 R:R:Y102 10.82795.86NoYes067
14R:R:L298 R:R:V59 10.5564.47NoNo067
15R:R:I63 R:R:V59 10.49743.07YesNo087
16L:L:?1 R:R:L132 47.3373.96YesYes007
17R:R:L132 R:R:W271 52.09816.83YesYes078
18R:R:N303 R:R:W271 82.988110.17YesYes198
19R:R:N303 R:R:N307 1006.81YesNo099
20R:R:D95 R:R:N307 49.275212.12YesNo099
21R:R:D95 R:R:N67 11.38216.73YesYes099
22L:L:?1 R:R:W210 70.413911.41YesYes106
23R:R:W210 R:R:W271 45.9626.56YesYes168
24R:R:D95 R:R:L91 48.03168.14YesYes099
25R:R:L91 R:R:N138 84.65458.24YesNo098
26R:R:N138 R:R:N90 78.72814.98NoNo089
27R:R:I168 R:R:N90 71.249.91NoNo089
28R:R:I168 R:R:V164 69.73183.07NoYes087
29R:R:P83 R:R:V164 62.11583.53YesYes067
30R:R:E145 R:R:P83 50.35174.72NoYes086
31R:R:E145 R:R:I84 47.34948.2NoNo088
32R:R:I84 R:R:Y85 45.78793.63NoYes089
33R:R:M318 R:R:Y85 21.00373.59YesYes489
34R:R:L139 R:R:N307 51.17078.24NoNo089
35R:R:L139 R:R:L91 40.274.15NoYes089
36R:R:I74 R:R:M318 13.22612.92YesYes078
37R:R:F80 R:R:Y85 14.322322.69YesYes489
38R:R:L139 R:R:Y311 12.38415.86NoYes089
39R:R:D129 R:R:Y202 11.79078.05YesYes154
40R:R:M178 R:R:W210 11.80326.98NoYes156
41R:R:F213 R:R:M178 11.32538.71YesNo155
42R:R:V136 R:R:W271 37.93923.68YesYes188
43R:R:N214 R:R:W210 13.68636.78YesYes176
44R:R:N214 R:R:V136 11.14234.43YesYes178
45R:R:T217 R:R:V136 60.83324.76YesYes178
46R:R:F213 R:R:T217 10.896.49YesYes157
47R:R:L140 R:R:T217 68.64817.37NoYes077
48R:R:F151 R:R:H147 27.23756.79YesYes667
49R:R:H147 R:R:L224 53.18357.71YesNo076
50R:R:L224 R:R:V220 54.75932.98NoNo065
51R:R:L140 R:R:V220 57.90022.98NoNo075
52R:R:H147 R:R:I228 22.73587.95YesNo079
53R:R:F151 R:R:V150 21.0023.93YesNo068
54R:R:I228 R:R:V150 21.11929.22NoNo098
55R:R:P182 R:R:Y202 20.02499.74NoYes164
56R:R:I181 R:R:P182 26.59263.39NoNo056
57R:R:I181 R:R:W186 19.92365.87NoNo056
58R:R:S205 R:R:W186 13.40749.88NoNo056
59R:R:S203 R:R:S205 10.06044.89NoNo055
60L:L:?1 R:R:M198 18.18975.06YesYes103
61R:R:F229 R:R:L256 32.91177.31YesNo067
62R:R:L256 R:R:V232 35.78084.47NoNo077
63R:R:V150 R:R:V232 38.8471.6NoNo087
64R:R:F229 R:R:M253 19.77624.98YesYes867
65L:L:?1 R:R:D129 25.80396.8YesYes105
66R:R:D129 R:R:Y206 10.91146.9YesNo157
67R:R:Q125 R:R:Y202 11.637911.27YesYes144
68R:R:F267 R:R:V136 14.36315.24YesYes198
69R:R:F267 R:R:N303 17.95523.62YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I30 R:R:Y34 4.84 1 No Yes 6 6 2 1
R:R:I30 R:R:W121 5.87 1 No Yes 6 9 2 2
R:R:K39 R:R:Y34 11.94 1 Yes Yes 8 6 1 1
R:R:L41 R:R:Y34 8.21 0 No Yes 2 6 2 1
R:R:T113 R:R:Y34 3.75 1 No Yes 5 6 1 1
R:R:W121 R:R:Y34 3.86 1 Yes Yes 9 6 2 1
R:R:P200 R:R:Y34 12.52 1 No Yes 6 6 2 1
L:L:?1 R:R:Y34 7.55 1 Yes Yes 0 6 0 1
R:R:K39 R:R:P200 5.02 1 Yes No 8 6 1 2
R:R:E293 R:R:K39 9.45 1 Yes Yes 4 8 1 1
L:L:?1 R:R:K39 10.09 1 Yes Yes 0 8 0 1
R:R:L105 R:R:Y102 3.52 0 Yes Yes 6 7 2 2
R:R:L297 R:R:Y102 10.55 0 No Yes 6 7 1 2
R:R:E301 R:R:Y102 21.32 0 No Yes 7 7 2 2
R:R:R124 R:R:Y104 3.09 1 Yes No 6 5 1 2
R:R:L105 R:R:R124 7.29 0 Yes Yes 6 6 2 1
R:R:I128 R:R:L105 4.28 0 No Yes 6 6 1 2
R:R:R124 R:R:T109 5.17 1 Yes No 6 5 1 1
L:L:?1 R:R:T109 8.44 1 Yes No 0 5 0 1
R:R:R124 R:R:T113 3.88 1 Yes No 6 5 1 1
L:L:?1 R:R:T113 5.27 1 Yes No 0 5 0 1
R:R:L116 R:R:R124 6.07 0 No Yes 6 6 2 1
R:R:Q125 R:R:W121 14.24 1 Yes Yes 4 9 1 2
R:R:W121 R:R:Y202 7.72 1 Yes Yes 9 4 2 2
L:L:?1 R:R:R124 3.48 1 Yes Yes 0 6 0 1
R:R:D129 R:R:Q125 5.22 1 Yes Yes 5 4 1 1
R:R:Q125 R:R:Y202 11.27 1 Yes Yes 4 4 1 2
L:L:?1 R:R:Q125 17.14 1 Yes Yes 0 4 0 1
R:R:D129 R:R:G126 5.03 1 Yes No 5 6 1 2
L:L:?1 R:R:I128 5.11 1 Yes No 0 6 0 1
R:R:D129 R:R:Y202 8.05 1 Yes Yes 5 4 1 2
R:R:D129 R:R:Y206 6.9 1 Yes No 5 7 1 2
L:L:?1 R:R:D129 6.8 1 Yes Yes 0 5 0 1
R:R:L132 R:R:W271 6.83 0 Yes Yes 7 8 1 2
R:R:E301 R:R:L132 6.63 0 No Yes 7 7 2 1
L:L:?1 R:R:L132 3.96 1 Yes Yes 0 7 0 1
R:R:M178 R:R:T133 9.03 1 No No 5 6 2 2
R:R:T133 R:R:W210 7.28 1 No Yes 6 6 2 1
R:R:M178 R:R:W210 6.98 1 No Yes 5 6 2 1
R:R:L277 R:R:M198 5.65 1 Yes Yes 4 3 2 1
R:R:D281 R:R:M198 5.54 0 Yes Yes 4 3 2 1
R:R:E293 R:R:M198 9.47 1 Yes Yes 4 3 1 1
L:L:?1 R:R:M198 5.06 1 Yes Yes 0 3 0 1
R:R:Y202 R:R:Y206 3.97 1 Yes No 4 7 2 2
R:R:L207 R:R:L278 5.54 0 No No 6 6 2 1
R:R:N214 R:R:W210 6.78 1 Yes Yes 7 6 2 1
R:R:W210 R:R:W271 6.56 1 Yes Yes 6 8 1 2
L:L:?1 R:R:W210 11.41 1 Yes Yes 0 6 0 1
R:R:N214 R:R:W271 14.69 1 Yes Yes 7 8 2 2
R:R:F296 R:R:G274 4.52 1 Yes No 5 5 2 1
L:L:?1 R:R:G274 3.67 1 Yes No 0 5 0 1
R:R:F296 R:R:L277 10.96 1 Yes Yes 5 4 2 2
L:L:?1 R:R:L278 4.95 1 Yes No 0 6 0 1
R:R:E293 R:R:K294 5.4 1 Yes No 4 4 1 1
L:L:?1 R:R:E293 5.69 1 Yes Yes 0 4 0 1
L:L:?1 R:R:K294 9.08 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 12.87 1 Yes No 0 6 0 1
R:R:L132 R:R:S131 3 0 Yes Yes 7 6 1 2
R:R:E293 R:R:L290 2.65 1 Yes No 4 3 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7TD0_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 272
Number of Links 312
Number of Hubs 45
Number of Links mediated by Hubs 172
Number of Communities 8
Number of Nodes involved in Communities 51
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 70
Number Of Links MetaPath 69
Number of Shortest Paths 113851
Length Of Smallest Path 3
Average Path Length 15.5588
Length of Longest Path 33
Minimum Path Strength 1.19
Average Path Strength 6.941
Maximum Path Strength 18.545
Minimum Path Correlation 0.7
Average Path Correlation 0.924191
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 46.7892
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.7899
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • adenylate cyclase regulator activity   • GTPase activating protein binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • protein localization to postsynaptic specialization membrane   • protein localization to postsynaptic membrane   • protein localization to cell periphery   • cellular localization   • protein localization to synapse   • biological regulation   • localization within membrane   • protein localization to membrane   • protein-containing complex localization   • neurotransmitter receptor localization to postsynaptic specialization membrane   • localization   • regulation of postsynaptic membrane neurotransmitter receptor levels   • macromolecule localization   • protein localization to organelle
Gene OntologyBiological Process• protein localization to postsynaptic specialization membrane   • protein localization to postsynaptic membrane   • protein localization to cell periphery   • cellular localization   • protein localization to synapse   • biological regulation   • localization within membrane   • protein localization to membrane   • protein-containing complex localization   • neurotransmitter receptor localization to postsynaptic specialization membrane   • localization   • regulation of postsynaptic membrane neurotransmitter receptor levels   • macromolecule localization   • protein localization to organelle   • cellular process   • protein localization to postsynapse   • intracellular protein localization   • regulation of biological quality   • protein localization to cell junction   • receptor localization to synapse   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • regulation of localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to alcohol   • response to prostaglandin E   • response to oxygen-containing compound   • trans-synaptic signaling   • regulation of signaling   • negative regulation of signaling   • modulation of chemical synaptic transmission   • negative regulation of biological process   • cell-cell signaling   • negative regulation of synaptic transmission   • negative regulation of cell communication   • chemical synaptic transmission   • synaptic signaling   • regulation of trans-synaptic signaling   • anterograde trans-synaptic signaling   • negative regulation of cellular process   • regulation of cell communication   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • cell periphery   • cell cortex   • intracellular anatomical structure   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • cell periphery   • cell cortex   • intracellular anatomical structure   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • intracellular organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • organelle   • membraneless organelle   • intracellular membraneless organelle   • microtubule cytoskeleton   • cytosol   • synapse   • cell junction   • glutamatergic synapse   • postsynapse   • membrane-bounded organelle   • nucleus   • intracellular membrane-bounded organelle   • protein binding   • binding   • G-protein beta-subunit binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • cellular process   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex binding   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • phospholipase C-activating G protein-coupled receptor signaling pathway   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • ion binding   • anion binding   • phospholipid binding   • lipid binding   • lysophosphatidic acid binding   • carbohydrate derivative binding   • small molecule binding   • bioactive lipid receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • lysophosphatidic acid receptor activity   • G-protein alpha-subunit binding   • PDZ domain binding   • protein domain specific binding   • nerve development   • cranial nerve development   • optic nerve development   • nervous system development   • positive regulation of programmed cell death   • regulation of apoptotic process   • positive regulation of biological process   • regulation of programmed cell death   • cell death   • positive regulation of apoptotic process   • apoptotic process   • programmed cell death   • positive regulation of cellular process   • head development   • brain development   • cerebellum development   • central nervous system development   • metencephalon development   • hindbrain development   • regulation of developmental process   • cellular developmental process   • cell projection organization   • positive regulation of dendritic spine development   • cell development   • regulation of dendritic spine development   • neuron projection development   • cellular component organization   • positive regulation of developmental process   • neurogenesis   • neuron differentiation   • dendrite development   • cell differentiation   • cellular component organization or biogenesis   • dendritic spine development   • plasma membrane bounded cell projection organization   • generation of neurons   • neuron development   • regulation of neuron projection development   • regulation of cellular component organization   • negative regulation of biological process   • negative regulation of cellular process   • negative regulation of cell projection organization   • negative regulation of cellular component organization   • regulation of cell projection organization   • negative regulation of neuron projection development   • regulation of plasma membrane bounded cell projection organization   • metabolic process   • regulation of metabolic process   • cell chemotaxis   • chemotaxis   • response to external stimulus   • taxis   • cell migration   • cell motility   • locomotion   • regulation of localization   • cellular localization   • transport   • regulation of transport   • regulation of synaptic vesicle cycle   • synaptic vesicle cycle   • regulation of vesicle-mediated transport   • establishment of localization   • vesicle-mediated transport   • vesicle-mediated transport in synapse   • localization   • establishment of localization in cell   • import into cell   • receptor internalization   • postsynaptic neurotransmitter receptor internalization   • regulation of receptor internalization   • regulation of postsynaptic neurotransmitter receptor internalization   • regulation of biological quality   • regulation of endocytosis   • regulation of receptor-mediated endocytosis   • neurotransmitter receptor internalization   • regulation of postsynaptic membrane neurotransmitter receptor levels   • postsynaptic endocytosis   • endocytosis   • receptor-mediated endocytosis   • corpus callosum development   • forebrain development   • telencephalon development   • positive regulation of cytosolic calcium ion concentration   • positive regulation of cell communication   • positive regulation of signal transduction   • positive regulation of canonical NF-kappaB signal transduction   • regulation of signal transduction   • intracellular signal transduction   • positive regulation of response to stimulus   • regulation of intracellular signal transduction   • intracellular signaling cassette   • regulation of signaling   • positive regulation of intracellular signal transduction   • canonical NF-kappaB signal transduction   • regulation of response to stimulus   • regulation of cell communication   • regulation of canonical NF-kappaB signal transduction   • positive regulation of signaling   • cellular component biogenesis   • bleb assembly   • cellular component assembly   • plasma membrane bounded cell projection assembly   • cell projection assembly   • small GTPase-mediated signal transduction   • regulation of small GTPase mediated signal transduction   • Rho protein signal transduction   • regulation of Rho protein signal transduction   • positive regulation of Rho protein signal transduction   • positive regulation of small GTPase mediated signal transduction   • positive regulation of locomotion   • regulation of cell motility   • positive regulation of smooth muscle cell chemotaxis   • regulation of smooth muscle cell chemotaxis   • regulation of response to external stimulus   • regulation of smooth muscle cell migration   • positive regulation of smooth muscle cell migration   • positive regulation of chemotaxis   • positive regulation of cell migration   • muscle cell migration   • positive regulation of response to external stimulus   • positive regulation of cell motility   • smooth muscle cell chemotaxis   • regulation of cell migration   • regulation of chemotaxis   • smooth muscle cell migration   • regulation of locomotion   • negative regulation of organelle assembly   • negative regulation of plasma membrane bounded cell projection assembly   • cilium assembly   • cilium organization   • organelle assembly   • regulation of cell projection assembly   • regulation of cellular component biogenesis   • regulation of organelle organization   • regulation of plasma membrane bounded cell projection assembly   • organelle organization   • regulation of cilium assembly   • negative regulation of organelle organization   • regulation of organelle assembly   • negative regulation of cilium assembly   • cellular response to oxygen levels   • response to oxygen levels   • response to abiotic stimulus   • regulation of cell shape   • cell morphogenesis   • regulation of cell morphogenesis   • anatomical structure morphogenesis   • regulation of anatomical structure morphogenesis   • negative regulation of signaling   • negative regulation of intracellular signal transduction   • negative regulation of cAMP/PKA signal transduction   • negative regulation of cell communication   • cAMP/PKA signal transduction   • negative regulation of response to stimulus   • negative regulation of signal transduction   • regulation of cAMP/PKA signal transduction   • oligodendrocyte development   • glial cell development   • gliogenesis   • oligodendrocyte differentiation   • glial cell differentiation   • positive regulation of MAPK cascade   • regulation of MAPK cascade   • MAPK cascade   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • myelination   • axon ensheathment   • ensheathment of neurons   • response to 1-oleoyl-sn-glycerol 3-phosphate   • response to organophosphorus   • cellular response to 1-oleoyl-sn-glycerol 3-phosphate   • positive regulation of organelle organization   • regulation of cytoskeleton organization   • regulation of actin filament-based process   • positive regulation of cellular component organization   • regulation of actin filament bundle assembly   • positive regulation of actin filament bundle assembly   • actin filament bundle organization   • positive regulation of stress fiber assembly   • actin filament-based process   • stress fiber assembly   • regulation of actin filament organization   • actin cytoskeleton organization   • actomyosin structure organization   • positive regulation of cellular component biogenesis   • positive regulation of cytoskeleton organization   • actin filament organization   • positive regulation of supramolecular fiber organization   • regulation of stress fiber assembly   • contractile actin filament bundle assembly   • regulation of actomyosin structure organization   • regulation of actin cytoskeleton organization   • actin filament bundle assembly   • regulation of supramolecular fiber organization   • supramolecular fiber organization   • cytoskeleton organization   • postsynaptic membrane   • plasma membrane region   • synaptic membrane   • presynapse   • presynaptic membrane   • somatodendritic compartment   • dendrite   • dendritic tree   • dendritic shaft   • neuron spine   • dendritic spine   • cell body   • neuronal cell body   • cell surface   • GABA-ergic synapse   • endosome   • intracellular vesicle   • endomembrane system   • cytoplasmic vesicle   • vesicle
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • WD40 repeat-like   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • WD40 repeat-like   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNKP
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNKP
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate
Synonyms18:1 LPA; oleoyl lysophosphatidic acid
Identifier
FormulaC21 H41 O7 P
Molecular Weight436.52
SMILES
PubChem49837858
Formal Charge0
Total Atoms70
Total Chiral Atoms1
Total Bonds69
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>7TD0_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7TD0_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.