Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F33 8.6225436
2R:R:Y34 4.70167616
3R:R:I57 3.002504
4R:R:I63 3.6775408
5R:R:N67 5.39409
6R:R:F80 9.988548
7R:R:L91 4.578529
8R:R:D95 5.542509
9R:R:Y102 9.29333607
10R:R:L116 3.52416
11R:R:W121 8.48519
12R:R:R124 6.73716
13R:R:Q125 9.46414
14R:R:D129 6.06415
15R:R:V136 5.5725418
16R:R:N138 8.0425408
17R:R:L139 4.685428
18R:R:I142 4.925428
19R:R:H147 9.28457
20R:R:F151 11.715456
21R:R:M178 4.145415
22R:R:I189 3.99403
23R:R:M198 8.3275463
24R:R:Y202 6.86714
25R:R:Y206 8.86517
26R:R:W210 5.14516
27R:R:N214 9.575417
28R:R:F229 5.27406
29R:R:M253 2.9525407
30R:R:F267 10.33419
31R:R:W271 7.4775818
32R:R:P273 4.37409
33R:R:D281 7.655464
34R:R:V282 4.165405
35R:R:Y311 5.02571729
36R:R:R314 8.662577
37L:L:?1 8.097691310
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I189 R:R:L201 13.85474.28YesNo031
2R:R:F33 R:R:L201 24.573620.7YesNo061
3R:R:F33 R:R:I192 11.11293.77YesNo061
4R:R:L201 R:R:W121 40.17710.25NoYes019
5R:R:R124 R:R:W121 21.63758YesYes169
6L:L:?1 R:R:R124 32.12447.72YesYes106
7R:R:Q125 R:R:W121 20.833315.33YesYes149
8L:L:?1 R:R:Q125 19.10627.52YesYes104
9R:R:G110 R:R:S49 11.44211.86NoNo051
10R:R:G110 R:R:T109 21.061.82NoNo055
11L:L:?1 R:R:T109 22.19345.2YesNo105
12R:R:C60 R:R:F103 13.30966.98NoNo066
13R:R:C60 R:R:Y102 15.21484.03NoYes067
14R:R:F103 R:R:I57 11.39366.28NoYes064
15R:R:L298 R:R:Y102 16.49947.03NoYes067
16R:R:L298 R:R:V59 15.34974.47NoNo067
17R:R:I63 R:R:V59 15.05833.07YesNo087
18R:R:I63 R:R:S304 17.5143.1YesNo089
19L:L:?1 R:R:W210 86.96578.04YesYes106
20R:R:W210 R:R:W271 95.54194.69YesYes168
21R:R:N303 R:R:W271 98.27837.91NoYes098
22R:R:N303 R:R:N307 1006.81NoNo099
23R:R:D95 R:R:N307 34.43988.08YesNo099
24R:R:D95 R:R:N67 18.99296.73YesYes099
25R:R:L139 R:R:N307 66.63438.24YesNo089
26R:R:L139 R:R:Y311 48.65073.52YesYes289
27R:R:M88 R:R:Y311 42.11465.99NoYes289
28R:R:I84 R:R:M88 50.14032.92NoNo088
29R:R:I84 R:R:Y85 43.63133.63NoNo089
30R:R:F80 R:R:Y85 40.171619.6YesNo089
31R:R:F80 R:R:R79 24.19044.28YesNo086
32R:R:F82 R:R:R79 22.33384.28NoNo076
33R:R:F82 R:R:P83 20.46634.33NoNo076
34R:R:D95 R:R:L91 38.40134.07YesYes099
35R:R:I142 R:R:L91 12.1064.28YesYes289
36R:R:L139 R:R:L91 18.16714.15YesYes289
37R:R:L91 R:R:N138 39.64276.87YesYes098
38R:R:N138 R:R:N90 26.581412.26YesNo089
39R:R:N90 R:R:W172 21.28136.78NoNo099
40R:R:F97 R:R:W172 15.9386.01NoNo079
41L:L:?1 R:R:L297 11.420615.63YesNo006
42R:R:E301 R:R:Y102 10.546225.81NoYes077
43R:R:M178 R:R:W210 11.39363.49YesYes156
44R:R:V136 R:R:W271 60.39514.9YesYes188
45R:R:T217 R:R:V136 64.09764.76NoYes078
46R:R:L140 R:R:T217 58.85155.9NoNo077
47R:R:F151 R:R:H147 27.601515.84YesYes567
48R:R:H147 R:R:L224 53.38956.43YesNo076
49R:R:L224 R:R:V220 54.80352.98NoNo065
50R:R:L140 R:R:V220 56.16362.98NoNo075
51R:R:H147 R:R:I228 23.04085.3YesNo079
52R:R:F151 R:R:V150 21.85343.93YesNo068
53R:R:I228 R:R:V150 21.71856.14NoNo098
54R:R:W186 R:R:Y206 10.873.86NoYes067
55L:L:?1 R:R:E293 20.083123.38YesNo004
56R:R:E293 R:R:M198 18.895714.89NoYes043
57R:R:D281 R:R:M198 10.9519.7YesYes643
58R:R:L207 R:R:V282 11.43672.98NoYes065
59L:L:?1 R:R:L207 12.84543.91YesNo106
60R:R:F229 R:R:L256 28.78358.53YesNo067
61R:R:L256 R:R:V232 31.57924.47NoNo077
62R:R:V150 R:R:V232 40.43611.6NoNo087
63R:R:F229 R:R:M253 16.08383.73YesYes067
64R:R:I310 R:R:Y311 14.03823.63NoYes089
65R:R:I262 R:R:I310 12.46222.94NoNo068
66R:R:I262 R:R:Y313 11.10757.25NoNo065
67R:R:C270 R:R:N303 11.82539.45NoNo099
68R:R:L297 R:R:Y102 10.35199.38NoYes067
69R:R:D95 R:R:S304 21.98295.89YesNo099
70R:R:E301 R:R:L132 11.20476.63NoNo077
71L:L:?1 R:R:Y202 12.67814.96YesYes104
72L:L:?1 R:R:Y34 12.53.31YesYes106
73R:R:L91 R:R:Y311 13.89253.52YesYes299
74R:R:L132 R:R:W271 10.96186.83NoYes178
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K39 R:R:Y34 7.17 1 No Yes 8 6 1 1
R:R:L41 R:R:Y34 3.52 0 No Yes 2 6 2 1
R:R:T113 R:R:Y34 7.49 0 No Yes 5 6 2 1
R:R:P200 R:R:Y34 5.56 0 No Yes 6 6 2 1
L:L:?1 R:R:Y34 3.31 1 Yes Yes 0 6 0 1
L:L:?1 R:R:K39 8.96 1 Yes No 0 8 0 1
R:R:K294 R:R:V52 13.66 1 No No 4 5 1 2
R:R:L105 R:R:Y102 3.52 0 No Yes 6 7 2 2
R:R:L297 R:R:Y102 9.38 0 No Yes 6 7 1 2
R:R:L105 R:R:R124 6.07 0 No Yes 6 6 2 1
R:R:N108 R:R:R124 7.23 0 No Yes 5 6 2 1
R:R:K294 R:R:T109 6.01 1 No No 4 5 1 1
L:L:?1 R:R:T109 5.2 1 Yes No 0 5 0 1
R:R:R124 R:R:T113 3.88 1 Yes No 6 5 1 2
R:R:L116 R:R:W121 3.42 1 Yes Yes 6 9 2 2
R:R:L116 R:R:R124 4.86 1 Yes Yes 6 6 2 1
R:R:R124 R:R:W121 8 1 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 15.33 1 Yes Yes 4 9 1 2
R:R:P200 R:R:W121 5.4 0 No Yes 6 9 2 2
R:R:L122 R:R:Y202 3.52 0 No Yes 5 4 2 1
R:R:Q125 R:R:R124 9.35 1 Yes Yes 4 6 1 1
L:L:?1 R:R:R124 7.72 1 Yes Yes 0 6 0 1
R:R:Q125 R:R:Y202 5.64 1 Yes Yes 4 4 1 1
L:L:?1 R:R:Q125 7.52 1 Yes Yes 0 4 0 1
R:R:D129 R:R:G126 3.35 1 Yes No 5 6 1 2
R:R:D129 R:R:Y202 8.05 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 8.05 1 Yes Yes 5 7 1 2
L:L:?1 R:R:D129 4.79 1 Yes Yes 0 5 0 1
R:R:L132 R:R:W210 3.42 1 No Yes 7 6 2 1
R:R:L132 R:R:W271 6.83 1 No Yes 7 8 2 2
R:R:M178 R:R:T133 4.52 1 Yes No 5 6 2 2
R:R:T133 R:R:W210 6.06 1 No Yes 6 6 2 1
R:R:M178 R:R:Y206 3.59 1 Yes Yes 5 7 2 2
R:R:M178 R:R:W210 3.49 1 Yes Yes 5 6 2 1
R:R:P182 R:R:Y202 13.91 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 20.86 1 No Yes 6 7 2 2
R:R:E293 R:R:M198 14.89 0 No Yes 4 3 1 2
R:R:A199 R:R:Y202 4 0 No Yes 4 4 2 1
R:R:Y202 R:R:Y206 7.94 1 Yes Yes 4 7 1 2
L:L:?1 R:R:Y202 4.96 1 Yes Yes 0 4 0 1
R:R:L207 R:R:L278 6.92 1 No No 6 6 1 1
L:L:?1 R:R:L207 3.91 1 Yes No 0 6 0 1
R:R:W210 R:R:W271 4.69 1 Yes Yes 6 8 1 2
L:L:?1 R:R:W210 8.04 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L278 4.88 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 23.38 1 Yes No 0 4 0 1
L:L:?1 R:R:K294 6.97 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 15.63 1 Yes No 0 6 0 1
R:R:L207 R:R:V282 2.98 1 No Yes 6 5 1 2
R:R:G110 R:R:T109 1.82 0 No No 5 5 2 1
R:R:K39 R:R:L290 1.41 1 No No 8 3 1 2
R:R:N35 R:R:Y34 1.16 0 No Yes 7 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YU3_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 269
Number of Links 301
Number of Hubs 37
Number of Links mediated by Hubs 147
Number of Communities 7
Number of Nodes involved in Communities 45
Number of Links involved in Communities 64
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 47599
Length Of Smallest Path 3
Average Path Length 12.3272
Length of Longest Path 30
Minimum Path Strength 1.145
Average Path Strength 6.41454
Maximum Path Strength 22.74
Minimum Path Correlation 0.7
Average Path Correlation 0.924844
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 51.8514
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.5955
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeK6L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeK6L
Name[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate
Synonyms
Identifier
FormulaC20 H34 N O6 P
Molecular Weight415.461
SMILES
PubChem141702624
Formal Charge0
Total Atoms62
Total Chiral Atoms1
Total Bonds62
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>7YU3_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 7YU3_nogp.zip



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