Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.331821110
2R:R:F32 5.0625432
3R:R:Y34 8.72516
4R:R:K39 6.036518
5R:R:W45 9.0675401
6R:R:M53 3.315404
7R:R:I63 2.3875408
8R:R:N77 6.916546
9R:R:F80 10.32548
10R:R:Y85 7.85409
11R:R:D95 6.428529
12R:R:Y102 8.658507
13R:R:W121 7.03609
14R:R:R124 5.4175406
15R:R:Q125 7.7725414
16R:R:D129 3.932515
17R:R:T133 5.4625416
18R:R:E145 5.935408
19R:R:H147 7.8175457
20R:R:F151 11.6325456
21R:R:H156 8.3175404
22R:R:W172 4.35409
23R:R:W186 6.6725406
24R:R:I189 3.535403
25R:R:M198 6.1775413
26R:R:Y202 6.14614
27R:R:S203 2.8175465
28R:R:Y206 6.5225417
29R:R:F229 6.1225406
30R:R:R248 6.945404
31R:R:M253 3.195407
32R:R:V263 3.375428
33R:R:W271 6.11833618
34R:R:D281 6.635414
35R:R:E293 5.935414
36R:R:N307 5.33529
37R:R:I310 4.09428
38R:R:Y311 4.72143729
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R124 31.46686.95YesYes006
2R:R:R124 R:R:W121 21.65655YesYes069
3L:L:?1 R:R:Q125 25.89610.48YesYes104
4R:R:Q125 R:R:W121 23.02877.67YesYes049
5R:R:L201 R:R:W121 39.810813.67NoYes019
6R:R:F33 R:R:L201 28.0229.74NoNo061
7R:R:F32 R:R:F33 18.24446.43YesNo026
8R:R:L201 R:R:V118 10.03154.47NoNo012
9L:L:?1 R:R:W210 94.396419.56YesNo106
10R:R:T133 R:R:W210 94.31867.28YesNo166
11R:R:F213 R:R:T133 95.6995.19NoYes156
12R:R:F213 R:R:V136 93.40115.24NoNo158
13R:R:V136 R:R:W271 97.36213.68NoYes188
14R:R:N303 R:R:W271 1009.04NoYes098
15R:R:N303 R:R:N307 96.77225.45NoYes099
16R:R:D95 R:R:N307 33.01936.73YesYes299
17R:R:D95 R:R:S304 43.80868.83YesNo099
18R:R:I63 R:R:S304 40.05653.1YesNo089
19R:R:I63 R:R:V59 33.7323.07YesNo087
20R:R:L298 R:R:V59 31.62664.47NoNo067
21R:R:L298 R:R:Y102 29.48845.86NoYes067
22R:R:C60 R:R:Y102 25.11374.03NoYes067
23R:R:C60 R:R:F103 23.99954.19NoNo066
24R:R:F103 R:R:I57 22.87722.51NoNo064
25R:R:I57 R:R:M53 19.46094.37NoYes044
26R:R:M53 R:R:W45 15.9714.65YesYes041
27R:R:L91 R:R:N307 62.11855.49NoYes299
28R:R:L91 R:R:N138 79.49868.24NoNo098
29R:R:N138 R:R:N90 75.812113.62NoNo089
30R:R:I168 R:R:N90 69.729214.16NoNo089
31R:R:I168 R:R:V164 69.01243.07NoNo087
32R:R:E145 R:R:V164 68.26284.28YesNo087
33R:R:E145 R:R:H156 40.80613.69YesYes084
34R:R:H156 R:R:I84 30.50427.95YesNo048
35R:R:I84 R:R:Y85 29.42693.63NoYes089
36R:R:F80 R:R:Y85 25.080914.44YesYes089
37R:R:F80 R:R:N77 12.366410.87YesYes486
38R:R:N307 R:R:Y311 19.26433.49YesYes299
39R:R:N90 R:R:W172 10.02337.91NoYes099
40R:R:L116 R:R:R124 10.57634.86NoYes066
41R:R:E145 R:R:R163 34.75210.47YesNo086
42R:R:I148 R:R:R163 33.72387.52NoNo056
43R:R:I144 R:R:I148 31.61432.94NoNo065
44R:R:I144 R:R:L224 30.54522.85NoNo066
45R:R:H147 R:R:L224 29.46796.43YesNo076
46R:R:H147 R:R:I228 18.29353.98YesNo079
47L:L:?1 R:R:D129 21.58694.86YesYes105
48R:R:D129 R:R:Y206 15.57374.6YesYes157
49R:R:W186 R:R:Y206 13.93525.79YesYes067
50L:L:?1 R:R:M198 13.35355.06YesYes103
51R:R:F267 R:R:W271 17.998611.02NoYes198
52R:R:F218 R:R:F267 17.142512.86NoNo059
53R:R:F218 R:R:I268 11.2036.28NoNo056
54R:R:I228 R:R:V232 17.13431.54NoNo097
55R:R:M253 R:R:V232 15.95053.04YesNo077
56R:R:D95 R:R:L91 17.96175.43YesNo299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K39 5.04 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T109 9.49 1 Yes No 0 5 0 1
L:L:?1 R:R:T113 4.22 1 Yes No 0 5 0 1
L:L:?1 R:R:R124 6.95 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q125 10.48 1 Yes Yes 0 4 0 1
L:L:?1 R:R:D129 4.86 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M198 5.06 1 Yes Yes 0 3 0 1
L:L:?1 R:R:W210 19.56 1 Yes No 0 6 0 1
L:L:?1 R:R:L278 4.95 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 7.59 1 Yes Yes 0 4 0 1
R:R:K39 R:R:Y34 10.75 1 Yes Yes 8 6 1 2
R:R:T113 R:R:Y34 3.75 0 No Yes 5 6 1 2
R:R:W121 R:R:Y34 7.72 0 Yes Yes 9 6 2 2
R:R:P200 R:R:Y34 16.69 1 No Yes 6 6 2 2
R:R:K39 R:R:P200 3.35 1 Yes No 8 6 1 2
R:R:K39 R:R:L290 5.64 1 Yes No 8 3 1 2
R:R:E293 R:R:K39 5.4 1 Yes Yes 4 8 1 1
R:R:L105 R:R:R124 4.86 0 No Yes 6 6 2 1
R:R:L116 R:R:R124 4.86 0 No Yes 6 6 2 1
R:R:R124 R:R:W121 5 0 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 7.67 1 Yes Yes 4 9 1 2
R:R:D129 R:R:Q125 3.92 1 Yes Yes 5 4 1 1
R:R:Q125 R:R:Y202 9.02 1 Yes Yes 4 4 1 2
R:R:D129 R:R:Y202 4.6 1 Yes Yes 5 4 1 2
R:R:D129 R:R:Y206 4.6 1 Yes Yes 5 7 1 2
R:R:M178 R:R:T133 6.02 1 No Yes 5 6 2 2
R:R:T133 R:R:W210 7.28 1 Yes No 6 6 2 1
R:R:M178 R:R:W210 3.49 1 No No 5 6 2 1
R:R:D281 R:R:M198 8.32 1 Yes Yes 4 3 2 1
R:R:M198 R:R:V289 4.56 1 Yes No 3 4 1 2
R:R:E293 R:R:M198 6.77 1 Yes Yes 4 3 1 1
R:R:Y202 R:R:Y206 5.96 1 Yes Yes 4 7 2 2
R:R:D281 R:R:V289 4.38 1 Yes No 4 4 2 2
R:R:E293 R:R:L290 3.98 1 Yes No 4 3 1 2
L:L:?1 R:R:G274 2.45 1 Yes No 0 5 0 1
R:R:D129 R:R:G126 1.68 1 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IZH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 280
Number of Links 304
Number of Hubs 38
Number of Links mediated by Hubs 147
Number of Communities 6
Number of Nodes involved in Communities 51
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 46162
Length Of Smallest Path 3
Average Path Length 16.0595
Length of Longest Path 33
Minimum Path Strength 1.505
Average Path Strength 6.59803
Maximum Path Strength 20.955
Minimum Path Correlation 0.7
Average Path Correlation 0.936116
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 53.042
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.042
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • anion binding   • phospholipid binding   • lipid binding   • lysophosphatidic acid binding   • carbohydrate derivative binding   • bioactive lipid receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • lysophosphatidic acid receptor activity   • protein binding   • G-protein alpha-subunit binding   • PDZ domain binding   • protein domain specific binding   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • developmental process   • multicellular organism development   • multicellular organismal process   • nerve development   • cranial nerve development   • anatomical structure development   • optic nerve development   • nervous system development   • system development   • regulation of biological process
Gene OntologyBiological Process• electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • developmental process   • multicellular organism development   • multicellular organismal process   • nerve development   • cranial nerve development   • anatomical structure development   • optic nerve development   • nervous system development   • system development   • regulation of biological process   • positive regulation of programmed cell death   • regulation of cellular process   • regulation of apoptotic process   • biological regulation   • positive regulation of biological process   • regulation of programmed cell death   • cell death   • positive regulation of apoptotic process   • apoptotic process   • programmed cell death   • positive regulation of cellular process   • head development   • animal organ development   • brain development   • cerebellum development   • central nervous system development   • metencephalon development   • hindbrain development   • regulation of developmental process   • cellular developmental process   • cell projection organization   • positive regulation of dendritic spine development   • cell development   • regulation of dendritic spine development   • neuron projection development   • cellular component organization   • positive regulation of developmental process   • neurogenesis   • neuron differentiation   • dendrite development   • cell differentiation   • cellular component organization or biogenesis   • dendritic spine development   • plasma membrane bounded cell projection organization   • generation of neurons   • neuron development   • regulation of neuron projection development   • regulation of cellular component organization   • negative regulation of biological process   • negative regulation of cellular process   • negative regulation of cell projection organization   • negative regulation of cellular component organization   • regulation of cell projection organization   • negative regulation of neuron projection development   • regulation of plasma membrane bounded cell projection organization   • regulation of metabolic process   • cell chemotaxis   • cellular response to stimulus   • chemotaxis   • response to stimulus   • response to external stimulus   • cellular response to chemical stimulus   • taxis   • response to chemical   • cell migration   • cell motility   • locomotion   • signaling   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of localization   • cellular localization   • transport   • regulation of transport   • regulation of synaptic vesicle cycle   • synaptic vesicle cycle   • regulation of vesicle-mediated transport   • establishment of localization   • vesicle-mediated transport   • vesicle-mediated transport in synapse   • localization   • establishment of localization in cell   • import into cell   • receptor internalization   • postsynaptic neurotransmitter receptor internalization   • regulation of receptor internalization   • regulation of postsynaptic neurotransmitter receptor internalization   • regulation of biological quality   • regulation of endocytosis   • regulation of receptor-mediated endocytosis   • protein-containing complex localization   • neurotransmitter receptor internalization   • regulation of postsynaptic membrane neurotransmitter receptor levels   • postsynaptic endocytosis   • endocytosis   • receptor-mediated endocytosis   • corpus callosum development   • forebrain development   • telencephalon development   • positive regulation of cytosolic calcium ion concentration   • positive regulation of cell communication   • positive regulation of signal transduction   • positive regulation of canonical NF-kappaB signal transduction   • regulation of signal transduction   • intracellular signal transduction   • positive regulation of response to stimulus   • regulation of intracellular signal transduction   • intracellular signaling cassette   • regulation of signaling   • positive regulation of intracellular signal transduction   • canonical NF-kappaB signal transduction   • regulation of response to stimulus   • regulation of cell communication   • regulation of canonical NF-kappaB signal transduction   • positive regulation of signaling   • cellular component biogenesis   • bleb assembly   • cellular component assembly   • plasma membrane bounded cell projection assembly   • cell projection assembly   • small GTPase-mediated signal transduction   • regulation of small GTPase mediated signal transduction   • Rho protein signal transduction   • regulation of Rho protein signal transduction   • positive regulation of Rho protein signal transduction   • positive regulation of small GTPase mediated signal transduction   • positive regulation of locomotion   • regulation of cell motility   • positive regulation of smooth muscle cell chemotaxis   • regulation of smooth muscle cell chemotaxis   • regulation of response to external stimulus   • regulation of smooth muscle cell migration   • positive regulation of smooth muscle cell migration   • positive regulation of chemotaxis   • positive regulation of cell migration   • muscle cell migration   • positive regulation of response to external stimulus   • positive regulation of cell motility   • smooth muscle cell chemotaxis   • regulation of cell migration   • regulation of chemotaxis   • smooth muscle cell migration   • regulation of locomotion   • negative regulation of organelle assembly   • negative regulation of plasma membrane bounded cell projection assembly   • cilium assembly   • cilium organization   • organelle assembly   • regulation of cell projection assembly   • regulation of cellular component biogenesis   • regulation of organelle organization   • regulation of plasma membrane bounded cell projection assembly   • organelle organization   • regulation of cilium assembly   • negative regulation of organelle organization   • regulation of organelle assembly   • negative regulation of cilium assembly   • cellular response to oxygen levels   • response to oxygen levels   • response to abiotic stimulus   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • regulation of cell shape   • cell morphogenesis   • regulation of cell morphogenesis   • anatomical structure morphogenesis   • regulation of anatomical structure morphogenesis   • negative regulation of signaling   • negative regulation of intracellular signal transduction   • negative regulation of cAMP/PKA signal transduction   • negative regulation of cell communication   • cAMP/PKA signal transduction   • negative regulation of response to stimulus   • negative regulation of signal transduction   • regulation of cAMP/PKA signal transduction   • oligodendrocyte development   • glial cell development   • gliogenesis   • oligodendrocyte differentiation   • glial cell differentiation   • positive regulation of MAPK cascade   • regulation of MAPK cascade   • MAPK cascade   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • myelination   • axon ensheathment   • ensheathment of neurons   • response to lipid   • response to 1-oleoyl-sn-glycerol 3-phosphate   • response to organophosphorus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to lipid   • cellular response to 1-oleoyl-sn-glycerol 3-phosphate   • positive regulation of organelle organization   • regulation of cytoskeleton organization   • regulation of actin filament-based process   • positive regulation of cellular component organization   • regulation of actin filament bundle assembly   • positive regulation of actin filament bundle assembly   • actin filament bundle organization   • positive regulation of stress fiber assembly   • actin filament-based process   • stress fiber assembly   • regulation of actin filament organization   • actin cytoskeleton organization   • actomyosin structure organization   • positive regulation of cellular component biogenesis   • positive regulation of cytoskeleton organization   • actin filament organization   • positive regulation of supramolecular fiber organization   • regulation of stress fiber assembly   • contractile actin filament bundle assembly   • regulation of actomyosin structure organization   • regulation of actin cytoskeleton organization   • actin filament bundle assembly   • regulation of supramolecular fiber organization   • supramolecular fiber organization   • cytoskeleton organization   • cellular anatomical structure   • periplasmic space   • cell periphery   • postsynapse   • postsynaptic membrane   • synapse   • cell junction   • membrane   • plasma membrane   • plasma membrane region   • synaptic membrane   • presynapse   • presynaptic membrane   • intracellular anatomical structure
Gene OntologyCellular Component• cellular anatomical structure   • periplasmic space   • cell periphery   • postsynapse   • postsynaptic membrane   • synapse   • cell junction   • membrane   • plasma membrane   • plasma membrane region   • synaptic membrane   • presynapse   • presynaptic membrane   • intracellular anatomical structure   • cytoplasm   • glutamatergic synapse   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • dendritic shaft   • plasma membrane bounded cell projection   • neuron spine   • dendritic spine   • cell body   • neuronal cell body   • cell surface   • GABA-ergic synapse   • membrane-bounded organelle   • endosome   • intracellular vesicle   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • cytoplasmic vesicle   • organelle   • vesicle   • binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • protein binding   • signaling receptor binding   • G protein-coupled receptor binding   • D5 dopamine receptor binding   • dopamine receptor binding   • enzyme regulator activity   • hydrolase activity   • GDP binding   • ribonucleoside triphosphate phosphatase activity   • molecular function regulator activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • pyrophosphatase activity   • GTPase activity   • nucleoside-triphosphatase regulator activity   • GTPase regulator activity   • guanyl-nucleotide exchange factor activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • cation binding   • metal ion binding   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • multicellular organismal process   • system process   • circulatory system process   • regulation of blood pressure   • blood circulation   • developmental process   • cellular developmental process   • cell differentiation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of vascular associated smooth muscle cell migration   • negative regulation of locomotion   • vascular associated smooth muscle cell migration   • regulation of cell motility   • negative regulation of vascular associated smooth muscle cell migration   • regulation of smooth muscle cell migration   • negative regulation of biological process   • smooth muscle cell migration   • muscle cell migration   • negative regulation of smooth muscle cell migration   • regulation of locomotion   • regulation of cell migration   • negative regulation of cellular process   • negative regulation of cell motility   • cell migration   • cell motility   • locomotion   • negative regulation of cell migration   • regulation of fibroblast migration   • fibroblast migration   • ameboidal-type cell migration   • multicellular organism development   • embryo development ending in birth or egg hatching   • chordate embryonic development   • anatomical structure development   • embryo development   • in utero embryonic development   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • regulation of developmental process   • regulation of cell shape   • cell morphogenesis   • regulation of cell morphogenesis   • anatomical structure morphogenesis   • regulation of anatomical structure morphogenesis   • regulation of body fluid levels   • wound healing   • cell activation   • hemostasis   • blood coagulation   • response to stress   • coagulation   • response to wounding   • platelet activation   • branching morphogenesis of an epithelial tube   • angiogenesis   • tube morphogenesis   • epithelial tube morphogenesis   • blood vessel development   • system development   • epithelium development   • blood vessel morphogenesis   • tube development   • morphogenesis of an epithelium   • tissue development   • vasculature development   • circulatory system development   • branching involved in blood vessel morphogenesis   • tissue morphogenesis   • morphogenesis of a branching structure   • anatomical structure formation involved in morphogenesis   • morphogenesis of a branching epithelium   • regulation of cellular component organization   • cellular component organization   • cellular component biogenesis   • cellular component assembly   • regulation of postsynapse assembly   • cell junction assembly   • regulation of synapse structure or activity   • synapse organization   • cellular component organization or biogenesis   • regulation of synapse assembly   • postsynapse organization   • postsynapse assembly   • regulation of postsynapse organization   • nervous system development   • regulation of cellular component biogenesis   • regulation of cell junction assembly   • regulation of synapse organization   • cell junction organization   • synapse assembly   • Rho-activating G protein-coupled receptor signaling pathway   • regulation of signaling   • small GTPase-mediated signal transduction   • regulation of small GTPase mediated signal transduction   • regulation of signal transduction   • intracellular signal transduction   • regulation of intracellular signal transduction   • regulation of response to stimulus   • intracellular signaling cassette   • regulation of cell communication   • Rho protein signal transduction   • regulation of vascular associated smooth muscle cell proliferation   • negative regulation of cell population proliferation   • cell population proliferation   • regulation of smooth muscle cell proliferation   • negative regulation of vascular associated smooth muscle cell proliferation   • smooth muscle cell proliferation   • negative regulation of smooth muscle cell proliferation   • regulation of cell population proliferation   • muscle cell proliferation   • vascular associated smooth muscle cell proliferation   • anchoring junction   • focal adhesion   • cell-substrate junction   • pigment granule   • melanosome   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • extracellular membrane-bounded organelle   • cytosol   • brush border membrane   • cluster of actin-based cell projections   • brush border   • cell projection membrane   • nucleus   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • camera-type eye development   • sensory system development   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • Ras protein signal transduction   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • cellular response to monoamine stimulus   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • G-protein beta-subunit binding   • fibroblast proliferation
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNKP
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNKP
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate
Synonyms18:1 LPA; oleoyl lysophosphatidic acid
Identifier
FormulaC21 H41 O7 P
Molecular Weight436.52
SMILES
PubChem49837858
Formal Charge0
Total Atoms70
Total Chiral Atoms1
Total Bonds69
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>9IZH_nogp_Chain_R
SIAFFYNRS GKHLATEWN TVSKLVMGL GITVCIFIM LANLLVMVA 
IYVNRRFHF PIYYLMANL AAADFFAGL AYFYLMFNT GPNTRRLTV 
STWLLRQGL IDTSLTASV ANLLAIAIE RHITVFRMQ LHTRMSNRR 
VVVVIVVIW TMAIVMGAI PSVGWNCIC DIENCSNMA PLYSDSYLV 
FWAIFNLVT FVVMVVLYA HIFGYVRQR TMRMSRHSS GPRRNRDTM 
MSLLKTVVI VLGAFIICW TPGLVLLLL DVCCPQCDV LAYEKFFLL 
LAEFNSAMN PIIYSYRDK EMSATFRQI LC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-0110.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-0110.1016/j.jsb.2024.108164
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-2710.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-2710.1038/s42003-024-07152-y
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-0110.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-0110.1016/j.jsb.2024.108164
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-0510.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-0510.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-0510.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-0510.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-0510.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-0510.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-0510.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-0510.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-0510.1038/s41467-022-33121-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-0510.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-0510.1038/s41467-022-33121-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-0910.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-0910.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-0910.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-0910.1038/s41467-022-28417-2
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-0910.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-0910.1038/s41467-022-28417-2
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-0310.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-0310.1016/j.cell.2015.06.002
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-0310.1016/j.cell.2015.06.002




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9IZH_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.