Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.331821110
2R:R:F32 5.0625432
3R:R:Y34 8.72516
4R:R:K39 6.036518
5R:R:W45 9.0675401
6R:R:M53 3.315404
7R:R:I63 2.3875408
8R:R:N77 6.916546
9R:R:F80 10.32548
10R:R:Y85 7.85409
11R:R:D95 6.428529
12R:R:Y102 8.658507
13R:R:W121 7.03609
14R:R:R124 5.4175406
15R:R:Q125 7.7725414
16R:R:D129 3.932515
17R:R:T133 5.4625416
18R:R:E145 5.935408
19R:R:H147 7.8175457
20R:R:F151 11.6325456
21R:R:H156 8.3175404
22R:R:W172 4.35409
23R:R:W186 6.6725406
24R:R:I189 3.535403
25R:R:M198 6.1775413
26R:R:Y202 6.14614
27R:R:S203 2.8175465
28R:R:Y206 6.5225417
29R:R:F229 6.1225406
30R:R:R248 6.945404
31R:R:M253 3.195407
32R:R:V263 3.375428
33R:R:W271 6.11833618
34R:R:D281 6.635414
35R:R:E293 5.935414
36R:R:N307 5.33529
37R:R:I310 4.09428
38R:R:Y311 4.72143729
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R124 31.46686.95YesYes006
2R:R:R124 R:R:W121 21.65655YesYes069
3L:L:?1 R:R:Q125 25.89610.48YesYes104
4R:R:Q125 R:R:W121 23.02877.67YesYes049
5R:R:L201 R:R:W121 39.810813.67NoYes019
6R:R:F33 R:R:L201 28.0229.74NoNo061
7R:R:F32 R:R:F33 18.24446.43YesNo026
8R:R:L201 R:R:V118 10.03154.47NoNo012
9L:L:?1 R:R:W210 94.396419.56YesNo106
10R:R:T133 R:R:W210 94.31867.28YesNo166
11R:R:F213 R:R:T133 95.6995.19NoYes156
12R:R:F213 R:R:V136 93.40115.24NoNo158
13R:R:V136 R:R:W271 97.36213.68NoYes188
14R:R:N303 R:R:W271 1009.04NoYes098
15R:R:N303 R:R:N307 96.77225.45NoYes099
16R:R:D95 R:R:N307 33.01936.73YesYes299
17R:R:D95 R:R:S304 43.80868.83YesNo099
18R:R:I63 R:R:S304 40.05653.1YesNo089
19R:R:I63 R:R:V59 33.7323.07YesNo087
20R:R:L298 R:R:V59 31.62664.47NoNo067
21R:R:L298 R:R:Y102 29.48845.86NoYes067
22R:R:C60 R:R:Y102 25.11374.03NoYes067
23R:R:C60 R:R:F103 23.99954.19NoNo066
24R:R:F103 R:R:I57 22.87722.51NoNo064
25R:R:I57 R:R:M53 19.46094.37NoYes044
26R:R:M53 R:R:W45 15.9714.65YesYes041
27R:R:L91 R:R:N307 62.11855.49NoYes299
28R:R:L91 R:R:N138 79.49868.24NoNo098
29R:R:N138 R:R:N90 75.812113.62NoNo089
30R:R:I168 R:R:N90 69.729214.16NoNo089
31R:R:I168 R:R:V164 69.01243.07NoNo087
32R:R:E145 R:R:V164 68.26284.28YesNo087
33R:R:E145 R:R:H156 40.80613.69YesYes084
34R:R:H156 R:R:I84 30.50427.95YesNo048
35R:R:I84 R:R:Y85 29.42693.63NoYes089
36R:R:F80 R:R:Y85 25.080914.44YesYes089
37R:R:F80 R:R:N77 12.366410.87YesYes486
38R:R:N307 R:R:Y311 19.26433.49YesYes299
39R:R:N90 R:R:W172 10.02337.91NoYes099
40R:R:L116 R:R:R124 10.57634.86NoYes066
41R:R:E145 R:R:R163 34.75210.47YesNo086
42R:R:I148 R:R:R163 33.72387.52NoNo056
43R:R:I144 R:R:I148 31.61432.94NoNo065
44R:R:I144 R:R:L224 30.54522.85NoNo066
45R:R:H147 R:R:L224 29.46796.43YesNo076
46R:R:H147 R:R:I228 18.29353.98YesNo079
47L:L:?1 R:R:D129 21.58694.86YesYes105
48R:R:D129 R:R:Y206 15.57374.6YesYes157
49R:R:W186 R:R:Y206 13.93525.79YesYes067
50L:L:?1 R:R:M198 13.34945.06YesYes103
51R:R:F267 R:R:W271 17.998611.02NoYes198
52R:R:F218 R:R:F267 17.142512.86NoNo059
53R:R:F218 R:R:I268 11.2036.28NoNo056
54R:R:I228 R:R:V232 17.13431.54NoNo097
55R:R:M253 R:R:V232 15.95053.04YesNo077
56R:R:D95 R:R:L91 17.96175.43YesNo299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K39 5.04 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T109 9.49 1 Yes No 0 5 0 1
L:L:?1 R:R:T113 4.22 1 Yes No 0 5 0 1
L:L:?1 R:R:R124 6.95 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q125 10.48 1 Yes Yes 0 4 0 1
L:L:?1 R:R:D129 4.86 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M198 5.06 1 Yes Yes 0 3 0 1
L:L:?1 R:R:W210 19.56 1 Yes No 0 6 0 1
L:L:?1 R:R:L278 4.95 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 7.59 1 Yes Yes 0 4 0 1
R:R:K39 R:R:Y34 10.75 1 Yes Yes 8 6 1 2
R:R:T113 R:R:Y34 3.75 0 No Yes 5 6 1 2
R:R:W121 R:R:Y34 7.72 0 Yes Yes 9 6 2 2
R:R:P200 R:R:Y34 16.69 1 No Yes 6 6 2 2
R:R:K39 R:R:P200 3.35 1 Yes No 8 6 1 2
R:R:K39 R:R:L290 5.64 1 Yes No 8 3 1 2
R:R:E293 R:R:K39 5.4 1 Yes Yes 4 8 1 1
R:R:L105 R:R:R124 4.86 0 No Yes 6 6 2 1
R:R:L116 R:R:R124 4.86 0 No Yes 6 6 2 1
R:R:R124 R:R:W121 5 0 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 7.67 1 Yes Yes 4 9 1 2
R:R:D129 R:R:Q125 3.92 1 Yes Yes 5 4 1 1
R:R:Q125 R:R:Y202 9.02 1 Yes Yes 4 4 1 2
R:R:D129 R:R:Y202 4.6 1 Yes Yes 5 4 1 2
R:R:D129 R:R:Y206 4.6 1 Yes Yes 5 7 1 2
R:R:M178 R:R:T133 6.02 1 No Yes 5 6 2 2
R:R:T133 R:R:W210 7.28 1 Yes No 6 6 2 1
R:R:M178 R:R:W210 3.49 1 No No 5 6 2 1
R:R:D281 R:R:M198 8.32 1 Yes Yes 4 3 2 1
R:R:M198 R:R:V289 4.56 1 Yes No 3 4 1 2
R:R:E293 R:R:M198 6.77 1 Yes Yes 4 3 1 1
R:R:Y202 R:R:Y206 5.96 1 Yes Yes 4 7 2 2
R:R:D281 R:R:V289 4.38 1 Yes No 4 4 2 2
R:R:E293 R:R:L290 3.98 1 Yes No 4 3 1 2
L:L:?1 R:R:G274 2.45 1 Yes No 0 5 0 1
R:R:D129 R:R:G126 1.68 1 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IZH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 280
Number of Links 304
Number of Hubs 38
Number of Links mediated by Hubs 147
Number of Communities 6
Number of Nodes involved in Communities 51
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 46160
Length Of Smallest Path 3
Average Path Length 16.06
Length of Longest Path 33
Minimum Path Strength 1.505
Average Path Strength 6.59811
Maximum Path Strength 20.955
Minimum Path Correlation 0.7
Average Path Correlation 0.936158
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 53.0038
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.0404
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNKP
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNKP
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate
Synonyms18:1 LPA; oleoyl lysophosphatidic acid
Identifier
FormulaC21 H41 O7 P
Molecular Weight436.52
SMILES
PubChem49837858
Formal Charge0
Total Atoms70
Total Chiral Atoms1
Total Bonds69
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>9IZH_nogp_Chain_R
SIAFFYNRS GKHLATEWN TVSKLVMGL GITVCIFIM LANLLVMVA 
IYVNRRFHF PIYYLMANL AAADFFAGL AYFYLMFNT GPNTRRLTV 
STWLLRQGL IDTSLTASV ANLLAIAIE RHITVFRMQ LHTRMSNRR 
VVVVIVVIW TMAIVMGAI PSVGWNCIC DIENCSNMA PLYSDSYLV 
FWAIFNLVT FVVMVVLYA HIFGYVRQR TMRMSRHSS GPRRNRDTM 
MSLLKTVVI VLGAFIICW TPGLVLLLL DVCCPQCDV LAYEKFFLL 
LAEFNSAMN PIIYSYRDK EMSATFRQI LC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 9IZH_nogp.zip



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