Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.776431410
2R:R:Y34 8.69667616
3R:R:K39 7.678518
4R:R:W45 8.0575401
5R:R:I63 3.655408
6R:R:F80 6.832548
7R:R:Y85 6.546549
8R:R:L91 4.655429
9R:R:D95 7.31509
10R:R:Y102 7.05833607
11R:R:W121 8.29619
12R:R:R124 7.4275416
13R:R:Q125 7.35333614
14R:R:D129 6.585415
15R:R:V136 5.178518
16R:R:I144 2.105406
17R:R:E145 3.7725408
18R:R:H147 9.3575467
19R:R:F151 10.3466
20R:R:V164 2.43557
21R:R:M178 5.035415
22R:R:W186 5.904506
23R:R:L201 10.11411
24R:R:Y202 5.39714
25R:R:Y206 7.108517
26R:R:W210 10.568516
27R:R:N214 7.965417
28R:R:Y225 5.285409
29R:R:F229 4.66406
30R:R:V232 2.59407
31R:R:M253 2.805407
32R:R:C270 3.8425489
33R:R:W271 5.78833618
34R:R:D281 7.2325474
35R:R:E293 6.4625414
36R:R:F296 6.645495
37R:R:L298 3.1975406
38R:R:I310 3.7875428
39R:R:Y311 4.66286729
40R:R:M318 4.664508
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y34 28.40014.19YesYes106
2R:R:W121 R:R:Y34 16.34729.65YesYes196
3R:R:L201 R:R:W121 41.307617.08YesYes119
4R:R:F33 R:R:L201 22.59714.61NoYes161
5R:R:F32 R:R:F33 18.900610.72NoNo026
6L:L:?1 R:R:Q125 16.97687.62YesYes104
7R:R:Q125 R:R:W121 17.21599.86YesYes149
8L:L:?1 R:R:Y202 24.51033.36YesYes104
9R:R:W121 R:R:Y202 15.98493.86YesYes194
10R:R:I189 R:R:L201 11.29674.28NoYes131
11L:L:?1 R:R:E293 19.34725.69YesYes104
12R:R:L105 R:R:Y102 11.93333.52NoYes067
13L:L:?1 R:R:T109 14.38828.44YesNo005
14R:R:G110 R:R:T109 12.90053.64NoNo055
15R:R:L298 R:R:Y102 19.51963.52YesYes067
16R:R:L298 R:R:V59 16.47734.47YesNo067
17R:R:I63 R:R:V59 15.8833.07YesNo087
18R:R:C60 R:R:Y102 14.25815.38NoYes067
19R:R:I63 R:R:S304 15.72474.64YesNo089
20L:L:?1 R:R:W210 10023.63YesYes106
21R:R:W210 R:R:W271 72.08533.75YesYes168
22R:R:N303 R:R:W271 85.37266.78NoYes098
23R:R:N303 R:R:N307 83.543810.9NoNo099
24R:R:D95 R:R:N307 20.98628.08YesNo099
25R:R:D95 R:R:S304 19.691911.78YesNo099
26R:R:L139 R:R:N307 62.41349.61NoNo089
27R:R:L139 R:R:Y311 54.73924.69NoYes289
28R:R:M88 R:R:Y311 52.44613.59NoYes289
29R:R:I84 R:R:M88 52.60082.92NoNo088
30R:R:I84 R:R:Y85 38.11063.63NoYes089
31R:R:F80 R:R:Y85 19.670813.41YesYes489
32R:R:D315 R:R:Y85 13.94866.9NoYes089
33R:R:E145 R:R:I84 16.52664.1YesNo088
34R:R:D95 R:R:L91 20.43054.07YesYes099
35R:R:L91 R:R:N138 16.48795.49YesNo098
36R:R:N138 R:R:N90 11.054112.26NoNo089
37R:R:A98 R:R:S304 15.43283.42NoNo089
38R:R:A98 R:R:S131 14.06463.42NoNo086
39R:R:F97 R:R:S131 11.30735.28NoNo076
40R:R:E301 R:R:Y102 11.057616.83NoYes077
41R:R:L132 R:R:W271 11.9725.69NoYes078
42R:R:N214 R:R:W210 47.916214.69YesYes176
43R:R:F213 R:R:N214 22.50917.25NoYes157
44R:R:N214 R:R:V136 24.82334.43YesYes178
45R:R:V136 R:R:W271 53.2414.9YesYes188
46R:R:T217 R:R:V136 74.93414.76NoYes178
47R:R:F213 R:R:T217 22.16095.19NoNo157
48R:R:F267 R:R:W271 10.329511.02NoYes198
49R:R:L140 R:R:T217 95.50875.9NoNo077
50R:R:I144 R:R:L140 79.22482.85YesNo067
51R:R:I144 R:R:L224 62.46972.85YesNo066
52R:R:H147 R:R:L224 60.73229YesNo076
53R:R:F151 R:R:H147 53.504713.58YesYes667
54R:R:I144 R:R:I148 15.40821.47YesNo065
55R:R:I148 R:R:R152 13.48785.01NoNo055
56R:R:M159 R:R:R152 11.56052.48NoNo065
57R:R:M178 R:R:W210 15.57353.49YesYes156
58R:R:W186 R:R:Y206 13.96624.82YesYes067
59R:R:L140 R:R:V220 17.46912.98NoNo075
60R:R:V216 R:R:V220 15.55591.6NoNo045
61R:R:I212 R:R:V216 13.63561.54NoNo044
62R:R:I212 R:R:V208 11.70821.54NoNo044
63R:R:E293 R:R:M198 17.50084.06YesNo043
64R:R:F218 R:R:F267 12.675410.72NoNo059
65R:R:F151 R:R:Y231 50.142412.38YesNo066
66R:R:V232 R:R:Y231 43.09781.26YesNo076
67R:R:M253 R:R:V232 18.9923.04YesYes077
68R:R:F229 R:R:M253 11.5643.73YesYes067
69R:R:L256 R:R:V232 13.24874.47NoYes077
70R:R:F229 R:R:L256 11.49726.09YesNo067
71R:R:F229 R:R:G230 11.56051.51YesNo062
72R:R:E301 R:R:L132 11.0475.3NoNo077
73R:R:M178 R:R:Y206 13.16784.79YesYes157
74R:R:L91 R:R:Y311 14.02953.52YesYes299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y34 4.19 1 Yes Yes 0 6 0 1
L:L:?1 R:R:K39 8.07 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L105 4.95 1 Yes No 0 6 0 1
L:L:?1 R:R:T109 8.44 1 Yes No 0 5 0 1
L:L:?1 R:R:T113 6.33 1 Yes No 0 5 0 1
L:L:?1 R:R:R124 6.95 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q125 7.62 1 Yes Yes 0 4 0 1
L:L:?1 R:R:D129 9.71 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y202 3.36 1 Yes Yes 0 4 0 1
L:L:?1 R:R:W210 23.63 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L278 5.94 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 5.69 1 Yes Yes 0 4 0 1
L:L:?1 R:R:K294 7.06 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 6.93 1 Yes No 0 6 0 1
R:R:I30 R:R:Y34 3.63 1 No Yes 6 6 2 1
R:R:I30 R:R:W121 5.87 1 No Yes 6 9 2 2
R:R:K39 R:R:Y34 11.94 1 Yes Yes 8 6 1 1
R:R:L41 R:R:Y34 4.69 0 No Yes 2 6 2 1
R:R:W121 R:R:Y34 9.65 1 Yes Yes 9 6 2 1
R:R:P200 R:R:Y34 18.08 1 No Yes 6 6 2 1
R:R:K39 R:R:P200 3.35 1 Yes No 8 6 1 2
R:R:K39 R:R:L290 4.23 1 Yes No 8 3 1 2
R:R:E293 R:R:K39 10.8 1 Yes Yes 4 8 1 1
R:R:K294 R:R:V52 3.04 0 No No 4 5 1 2
R:R:L105 R:R:Y102 3.52 1 No Yes 6 7 1 2
R:R:L297 R:R:Y102 3.52 0 No Yes 6 7 1 2
R:R:L105 R:R:Q125 3.99 1 No Yes 6 4 1 1
R:R:G110 R:R:T109 3.64 0 No No 5 5 2 1
R:R:R124 R:R:T113 3.88 1 Yes No 6 5 1 1
R:R:L116 R:R:R124 4.86 0 No Yes 6 6 2 1
R:R:Q125 R:R:W121 9.86 1 Yes Yes 4 9 1 2
R:R:W121 R:R:Y202 3.86 1 Yes Yes 9 4 2 1
R:R:Q125 R:R:R124 14.02 1 Yes Yes 4 6 1 1
R:R:I128 R:R:Q125 4.12 0 No Yes 6 4 2 1
R:R:Q125 R:R:Y202 4.51 1 Yes Yes 4 4 1 1
R:R:D129 R:R:Y202 6.9 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 8.05 1 Yes Yes 5 7 1 2
R:R:M178 R:R:T133 7.53 1 Yes No 5 6 2 2
R:R:T133 R:R:W210 7.28 1 No Yes 6 6 2 1
R:R:M178 R:R:Y206 4.79 1 Yes Yes 5 7 2 2
R:R:M178 R:R:W210 3.49 1 Yes Yes 5 6 2 1
R:R:P182 R:R:Y202 11.13 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 13.91 1 No Yes 6 7 2 2
R:R:E293 R:R:M198 4.06 1 Yes No 4 3 1 2
R:R:A199 R:R:Y202 4 0 No Yes 4 4 2 1
R:R:Y202 R:R:Y206 3.97 1 Yes Yes 4 7 1 2
R:R:N214 R:R:W210 14.69 1 Yes Yes 7 6 2 1
R:R:W210 R:R:W271 3.75 1 Yes Yes 6 8 1 2
R:R:E293 R:R:L290 5.3 1 Yes No 4 3 1 2
R:R:D129 R:R:G126 1.68 1 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IZG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.01
Number of Linked Nodes 276
Number of Links 316
Number of Hubs 40
Number of Links mediated by Hubs 160
Number of Communities 9
Number of Nodes involved in Communities 57
Number of Links involved in Communities 80
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 68981
Length Of Smallest Path 3
Average Path Length 13.1599
Length of Longest Path 27
Minimum Path Strength 1.36
Average Path Strength 6.67125
Maximum Path Strength 19.16
Minimum Path Correlation 0.7
Average Path Correlation 0.926774
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 51.0655
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.3712
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNKP
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNKP
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate
Synonyms18:1 LPA; oleoyl lysophosphatidic acid
Identifier
FormulaC21 H41 O7 P
Molecular Weight436.52
SMILES
PubChem49837858
Formal Charge0
Total Atoms70
Total Chiral Atoms1
Total Bonds69
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>9IZG_nogp_Chain_R
SIAFFYNRS GKHLATEWN TVSKLVMGL GITVCIFIM LANLLVMVA 
IYVNRRFHF PIYYLMANL AAADFFAGL AYFYLMFNT GPNTRRLTV 
STWLLRQGL IDTSLTASV ANLLAIAIE RHITVFRMQ LHTRMSNRR 
VVVVIVVIW TMAIVMGAI PSVGWNCIC DIENCSNMA PLYSDSYLV 
FWAIFNLVT FVVMVVLYA HIFGYVRQR TMRMSRHSS GPRRNRDTM 
MSLLKTVVI VLGAFIICW TPGLVLLLL DVCCPQCDV LAYEKFFLL 
LAEFNSAMN PIIYSYRDK EMSATFRQI L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 9IZG_nogp.zip



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