Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.2371010
2R:R:Y34 5.334506
3R:R:W45 8.535441
4R:R:I63 4.3575408
5R:R:N67 5.106509
6R:R:N77 9.1436
7R:R:F80 11.438538
8R:R:P83 4.912506
9R:R:Y85 8.1675409
10R:R:D95 6.674509
11R:R:F97 3.575407
12R:R:Y102 11.07407
13R:R:F103 7.38456
14R:R:T120 3.285414
15R:R:W121 11.46419
16R:R:R124 8.484516
17R:R:Q125 12.4875414
18R:R:D129 9.4475415
19R:R:S131 3.825406
20R:R:L132 5.345417
21R:R:L140 4.0075407
22R:R:E145 4.9075408
23R:R:H147 11.5975467
24R:R:F151 13.2466
25R:R:M178 5.185415
26R:R:I189 3.555403
27R:R:Y202 6.9425814
28R:R:Y206 9.53517
29R:R:W210 6.226516
30R:R:T217 5.0525407
31R:R:Y225 5.07629
32R:R:F229 7.4175406
33R:R:F267 9.7425419
34R:R:W271 6.6918
35R:R:V282 5.365405
36R:R:E293 9.7125414
37R:R:F296 5.5675405
38R:R:L298 4.4225406
39R:R:Y311 6.96167629
40R:R:M318 6.7225408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:E293 36.29776.47YesYes104
2R:R:E293 R:R:K39 35.37849.45YesNo148
3R:R:K39 R:R:Y34 34.4248.36NoYes086
4R:R:P200 R:R:Y34 24.029.74NoYes066
5R:R:L201 R:R:P200 21.6111.64NoNo016
6R:R:F33 R:R:L201 12.957423.14NoNo061
7R:R:F32 R:R:F33 11.6932.14NoNo026
8L:L:?1 R:R:L297 20.839612.4YesNo006
9R:R:L297 R:R:Y102 20.128210.55NoYes067
10R:R:C60 R:R:Y102 27.77095.38NoYes067
11R:R:C60 R:R:F103 27.16165.59NoYes066
12R:R:F103 R:R:F107 33.353313.93YesNo565
13R:R:F107 R:R:M106 31.9413.73NoNo056
14R:R:M106 R:R:M53 23.38962.89NoNo064
15R:R:M53 R:R:W45 18.0964.65NoYes041
16R:R:P111 R:R:W45 12.717921.62NoYes441
17R:R:G110 R:R:P111 10.94284.06NoNo054
18L:L:?1 R:R:W271 75.87433.71YesYes108
19R:R:N303 R:R:W271 66.667810.17NoYes098
20R:R:N303 R:R:N307 65.70994.09NoNo099
21R:R:D95 R:R:N307 83.32698.08YesNo099
22R:R:D95 R:R:N67 1008.08YesYes099
23R:R:I63 R:R:N67 10.07644.25YesYes089
24R:R:A305 R:R:I63 11.74233.25NoYes078
25R:R:F96 R:R:N67 21.68843.62NoYes079
26R:R:F103 R:R:M64 19.89224.98YesNo066
27R:R:F96 R:R:M64 19.99084.98NoNo076
28R:R:A92 R:R:N67 92.67784.69NoYes099
29R:R:A92 R:R:V70 91.85363.39NoNo099
30R:R:F322 R:R:V70 91.02243.93NoNo069
31R:R:A73 R:R:F322 89.33894.16NoNo076
32R:R:A73 R:R:M318 88.48663.22NoYes078
33R:R:I74 R:R:M318 28.13375.83NoYes078
34R:R:I74 R:R:Y85 26.0244.84NoYes079
35R:R:F80 R:R:M318 32.691213.68YesYes088
36R:R:F80 R:R:Y85 26.326919.6YesYes089
37R:R:D315 R:R:M318 26.8944.16NoYes088
38R:R:D315 R:R:Y85 25.81624.6NoYes089
39R:R:I84 R:R:Y85 74.7793.63NoYes089
40R:R:E145 R:R:I84 71.39448.2YesNo088
41R:R:E145 R:R:P83 48.0334.72YesYes086
42R:R:N161 R:R:P83 13.64073.26NoYes036
43R:R:N161 R:R:Y86 10.47448.14NoNo034
44R:R:H81 R:R:Y86 13.98588.71NoNo084
45R:R:P83 R:R:V164 24.4185.3YesNo067
46R:R:V164 R:R:Y86 10.50963.79NoNo074
47R:R:F267 R:R:W271 35.769416.04YesYes198
48R:R:F218 R:R:F267 40.703712.86NoYes059
49R:R:F218 R:R:V222 23.00576.55NoNo054
50R:R:L264 R:R:V222 21.76955.96NoNo074
51R:R:L264 R:R:Y225 20.50154.69NoYes079
52R:R:Y225 R:R:Y311 12.84124.96YesYes299
53R:R:D95 R:R:L91 30.68715.43YesNo099
54R:R:L91 R:R:N138 11.50996.87NoNo098
55R:R:L139 R:R:N307 26.13678.24NoNo089
56R:R:L139 R:R:L91 26.17555.54NoNo089
57R:R:F97 R:R:S131 10.92173.96YesYes076
58R:R:L132 R:R:S131 11.62264.5YesYes076
59R:R:L132 R:R:W271 17.75795.69YesYes178
60R:R:E301 R:R:L132 12.31996.63NoYes077
61R:R:E301 R:R:Y102 11.661321.32NoYes077
62L:L:?1 R:R:Q125 15.54617.59YesYes104
63R:R:L116 R:R:W121 10.77385.69NoYes169
64R:R:L116 R:R:T120 13.11242.95NoYes164
65L:L:?1 R:R:Y202 18.0893.82YesYes104
66R:R:V136 R:R:W271 27.04893.68NoYes188
67R:R:T217 R:R:V136 32.04664.76YesNo078
68R:R:L140 R:R:T217 34.92767.37YesYes077
69R:R:I144 R:R:L140 67.82662.85NoYes067
70R:R:I144 R:R:L224 66.24172.85NoNo066
71R:R:H147 R:R:L224 63.02267.71YesNo076
72R:R:F151 R:R:H147 32.370722.63YesYes667
73R:R:H147 R:R:I228 27.32725.3YesNo079
74R:R:E145 R:R:T149 13.72171.41YesNo088
75R:R:R152 R:R:T149 10.22087.76NoNo058
76R:R:F151 R:R:V150 25.83385.24YesNo068
77R:R:I228 R:R:V150 25.7889.22NoNo098
78R:R:W186 R:R:Y206 13.50333.86NoYes067
79R:R:S205 R:R:W186 10.463811.12NoNo056
80L:L:?1 R:R:M198 14.04578.06YesNo103
81R:R:D281 R:R:M198 14.21485.54NoNo043
82R:R:D281 R:R:S196 11.6938.83NoNo045
83R:R:L207 R:R:S196 10.42164.5NoNo065
84R:R:F218 R:R:I268 18.3395.02NoNo056
85R:R:V150 R:R:V232 48.15621.6NoNo087
86R:R:L256 R:R:V232 38.25944.47NoNo077
87R:R:F229 R:R:L256 35.10029.74YesNo067
88R:R:F229 R:R:M253 21.1397.46YesNo067
89R:R:D251 R:R:M253 10.60474.16NoNo057
90R:R:I268 R:R:T272 15.80324.56NoNo065
91R:R:P273 R:R:T272 13.23925.25NoNo095
92R:R:F296 R:R:P273 11.94668.67YesNo059
93R:R:L140 R:R:M221 45.10272.83YesNo079
94R:R:L139 R:R:M221 45.75422.83NoNo089
95R:R:V164 R:R:V165 10.52021.6NoNo071
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Q125 7.59 1 Yes Yes 0 4 0 1
L:L:?1 R:R:I128 8.13 1 Yes No 0 6 0 1
L:L:?1 R:R:D129 14.36 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M198 8.06 1 Yes No 0 3 0 1
L:L:?1 R:R:Y202 3.82 1 Yes Yes 0 4 0 1
L:L:?1 R:R:W210 12.05 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W271 3.71 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L278 15.78 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 6.47 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L297 12.4 1 Yes No 0 6 0 1
R:R:K39 R:R:L290 5.64 1 No No 8 3 2 2
R:R:E293 R:R:K39 9.45 1 Yes No 4 8 1 2
R:R:A101 R:R:I128 3.25 0 No No 5 6 2 1
R:R:L297 R:R:Y102 10.55 0 No Yes 6 7 1 2
R:R:L105 R:R:R124 12.15 0 No Yes 6 6 2 2
R:R:I128 R:R:L105 5.71 0 No No 6 6 1 2
R:R:R124 R:R:W121 10 1 Yes Yes 6 9 2 2
R:R:Q125 R:R:W121 26.29 1 Yes Yes 4 9 1 2
R:R:W121 R:R:Y202 3.86 1 Yes Yes 9 4 2 1
R:R:Q125 R:R:R124 8.18 1 Yes Yes 4 6 1 2
R:R:Q125 R:R:Y202 7.89 1 Yes Yes 4 4 1 1
R:R:D129 R:R:G126 5.03 1 Yes No 5 6 1 2
R:R:D129 R:R:Y202 9.2 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 9.2 1 Yes Yes 5 7 1 2
R:R:L132 R:R:W210 4.56 1 Yes Yes 7 6 2 1
R:R:L132 R:R:W271 5.69 1 Yes Yes 7 8 2 1
R:R:M178 R:R:T133 7.53 1 Yes No 5 6 2 2
R:R:T133 R:R:W210 7.28 1 No Yes 6 6 2 1
R:R:F267 R:R:V136 5.24 1 Yes No 9 8 2 2
R:R:V136 R:R:W271 3.68 1 No Yes 8 8 2 1
R:R:M178 R:R:Y206 5.99 1 Yes Yes 5 7 2 2
R:R:M178 R:R:W210 3.49 1 Yes Yes 5 6 2 1
R:R:P182 R:R:Y202 12.52 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 16.69 1 No Yes 6 7 2 2
R:R:D281 R:R:M198 5.54 0 No No 4 3 2 1
R:R:E293 R:R:M198 18.95 1 Yes No 4 3 1 1
R:R:A199 R:R:Y202 4 0 No Yes 4 4 2 1
R:R:Y202 R:R:Y206 11.91 1 Yes Yes 4 7 1 2
R:R:W210 R:R:W271 3.75 1 Yes Yes 6 8 1 1
R:R:F267 R:R:N214 4.83 1 Yes No 9 7 2 2
R:R:N214 R:R:W271 6.78 1 No Yes 7 8 2 1
R:R:L275 R:R:N214 10.98 1 No No 6 7 2 2
R:R:F267 R:R:W271 16.04 1 Yes Yes 9 8 2 1
R:R:L275 R:R:W271 5.69 1 No Yes 6 8 2 1
R:R:A300 R:R:W271 3.89 0 No Yes 7 8 2 1
R:R:N303 R:R:W271 10.17 0 No Yes 9 8 2 1
R:R:E293 R:R:L290 3.98 1 Yes No 4 3 1 2
R:R:L122 R:R:Y202 2.34 0 No Yes 5 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9J5V_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.22
Number of Linked Nodes 268
Number of Links 301
Number of Hubs 40
Number of Links mediated by Hubs 155
Number of Communities 7
Number of Nodes involved in Communities 46
Number of Links involved in Communities 65
Path Summary
Number Of Nodes in MetaPath 96
Number Of Links MetaPath 95
Number of Shortest Paths 68470
Length Of Smallest Path 3
Average Path Length 15.7668
Length of Longest Path 32
Minimum Path Strength 1.36
Average Path Strength 6.3642
Maximum Path Strength 16.99
Minimum Path Correlation 0.7
Average Path Correlation 0.930062
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 47.342
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.145
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>9J5V_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZFALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 9J5V_nogp.zip



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