Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.900771310
2R:R:E28 13.2275444
3R:R:F33 11.478546
4R:R:Y34 5.656506
5R:R:N67 4.9825409
6R:R:F80 8.18638
7R:R:P83 4.0075406
8R:R:Y85 9.6625439
9R:R:L91 5.244529
10R:R:D95 5.52529
11R:R:F96 5.2275457
12R:R:Y102 10.27507
13R:R:L116 3.8775416
14R:R:T120 2.6825414
15R:R:W121 8.28519
16R:R:R124 7.03833616
17R:R:Q125 9.46414
18R:R:D129 7.0525415
19R:R:L132 5.63417
20R:R:V136 5.53418
21R:R:N138 8.385408
22R:R:H147 9.384567
23R:R:F151 13.1275466
24R:R:V164 3.79407
25R:R:M178 4.544515
26R:R:M198 7.788503
27R:R:Y202 6.08714
28R:R:Y206 8.86333617
29R:R:W210 5.17333616
30R:R:N214 9.75417
31R:R:Y225 6.618509
32R:R:F267 9.328519
33R:R:W271 8.06818
34R:R:N307 7.1575429
35R:R:Y311 6.28167629
36R:R:D315 7.1675438
37R:R:M318 6.21667638
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R124 32.06427.72YesYes106
2R:R:R124 R:R:W121 19.95827YesYes169
3R:R:L201 R:R:W121 34.929510.25NoYes019
4R:R:I189 R:R:L201 10.56884.28NoNo031
5L:L:?1 R:R:Q125 20.14957.52YesYes104
6R:R:Q125 R:R:W121 22.363115.33YesYes149
7R:R:F33 R:R:L201 22.947520.7YesNo061
8R:R:F33 R:R:I192 10.56888.79YesNo061
9L:L:?1 R:R:K39 11.43667.96YesNo008
10R:R:K39 R:R:Y34 10.434211.94NoYes086
11R:R:C60 R:R:Y102 14.615.38NoYes067
12R:R:C60 R:R:F103 12.99856.98NoNo066
13L:L:?1 R:R:W210 80.50586.43YesYes106
14R:R:L132 R:R:S131 11.20994.5YesNo076
15R:R:A98 R:R:S131 10.58653.42NoNo086
16R:R:A98 R:R:S304 10.3283.42NoNo089
17R:R:W210 R:R:W271 92.64724.69YesYes168
18R:R:N303 R:R:W271 1009.04NoYes098
19R:R:N303 R:R:N307 98.25745.45NoYes099
20R:R:D95 R:R:N307 69.30658.08YesYes299
21R:R:D95 R:R:N67 85.91776.73YesYes099
22R:R:A92 R:R:N67 77.95924.69NoYes099
23R:R:A92 R:R:V70 77.1343.39NoNo099
24R:R:M318 R:R:V70 76.28394.56YesNo089
25R:R:F80 R:R:M318 37.57538.71YesYes388
26R:R:F80 R:R:Y85 32.517518.57YesYes389
27R:R:I74 R:R:Y85 11.68457.25NoYes079
28R:R:D315 R:R:M318 35.25549.7YesYes388
29R:R:D315 R:R:Y85 32.21659.2YesYes389
30R:R:I84 R:R:Y85 51.80633.63NoYes089
31R:R:E145 R:R:I84 49.603312.3NoNo088
32R:R:E145 R:R:P83 29.34414.72NoYes086
33R:R:P83 R:R:V164 13.88045.3YesYes067
34R:R:V164 R:R:Y86 18.39983.79YesNo074
35R:R:E145 R:R:L87 18.28656.63NoNo088
36R:R:L87 R:R:V164 13.77424.47NoYes087
37R:R:L139 R:R:N307 20.429310.98NoYes289
38R:R:L139 R:R:Y311 23.0753.52NoYes289
39R:R:L91 R:R:N307 15.3294.12YesYes299
40R:R:L91 R:R:N138 14.44718.24YesYes098
41R:R:E301 R:R:L132 17.35856.63NoYes077
42R:R:E301 R:R:Y102 16.30323.57NoYes077
43R:R:W210 R:R:Y206 18.76825.79YesYes167
44R:R:M178 R:R:W210 11.61374.65YesYes156
45R:R:V136 R:R:W271 46.88324.9YesYes188
46R:R:T217 R:R:V136 46.97534.76NoYes078
47R:R:L140 R:R:T217 45.99425.9NoNo077
48R:R:I144 R:R:L140 43.00847.14NoNo067
49R:R:I142 R:R:L91 11.49324.28NoYes289
50R:R:V263 R:R:Y311 15.01036.31NoYes089
51R:R:I144 R:R:L224 41.9992.85NoNo066
52R:R:H147 R:R:L224 40.982511.57YesNo076
53R:R:F151 R:R:H147 20.549720.36YesYes667
54R:R:H147 R:R:I228 17.25225.3YesNo079
55R:R:M159 R:R:P83 11.2631.68NoYes066
56R:R:F151 R:R:V150 16.24643.93YesNo068
57R:R:I228 R:R:V150 16.13669.22NoNo098
58R:R:F213 R:R:M178 10.70694.98NoYes055
59R:R:W186 R:R:Y206 13.93713.86NoYes067
60L:L:?1 R:R:E293 29.007624.32YesNo004
61R:R:E293 R:R:M198 27.870714.89NoYes043
62R:R:L277 R:R:M198 10.1657.07NoYes043
63R:R:V150 R:R:V232 30.07721.6NoNo087
64R:R:L256 R:R:V232 25.57554.47NoNo077
65R:R:F229 R:R:L256 23.43277.31NoNo067
66R:R:F229 R:R:M253 14.1397.46NoNo067
67R:R:L132 R:R:W271 12.69047.97YesYes178
68R:R:D95 R:R:L91 13.26415.43YesYes299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K39 7.96 1 Yes No 0 8 0 1
L:L:?1 R:R:T109 5.2 1 Yes No 0 5 0 1
L:L:?1 R:R:R124 7.72 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q125 7.52 1 Yes Yes 0 4 0 1
L:L:?1 R:R:D129 4.79 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y202 4.96 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L207 3.91 1 Yes No 0 6 0 1
L:L:?1 R:R:W210 6.43 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L278 3.91 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 24.32 1 Yes No 0 4 0 1
L:L:?1 R:R:K294 6.97 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 16.61 1 Yes No 0 6 0 1
R:R:K39 R:R:Y34 11.94 0 No Yes 8 6 1 2
R:R:K294 R:R:V52 13.66 0 No No 4 5 1 2
R:R:L297 R:R:Y102 9.38 0 No Yes 6 7 1 2
R:R:L105 R:R:R124 6.07 0 No Yes 6 6 2 1
R:R:N108 R:R:R124 7.23 0 No Yes 5 6 2 1
R:R:L116 R:R:W121 3.42 1 Yes Yes 6 9 2 2
R:R:L116 R:R:R124 4.86 1 Yes Yes 6 6 2 1
R:R:R124 R:R:W121 7 1 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 15.33 1 Yes Yes 4 9 1 2
R:R:L122 R:R:Y202 4.69 0 No Yes 5 4 2 1
R:R:Q125 R:R:R124 9.35 1 Yes Yes 4 6 1 1
R:R:Q125 R:R:Y202 5.64 1 Yes Yes 4 4 1 1
R:R:D129 R:R:G126 5.03 1 Yes No 5 6 1 2
R:R:D129 R:R:Y202 8.05 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 10.34 1 Yes Yes 5 7 1 2
R:R:L132 R:R:W210 3.42 1 Yes Yes 7 6 2 1
R:R:L132 R:R:W271 7.97 1 Yes Yes 7 8 2 2
R:R:M178 R:R:T133 4.52 1 Yes No 5 6 2 2
R:R:T133 R:R:W210 6.06 1 No Yes 6 6 2 1
R:R:M178 R:R:Y206 3.59 1 Yes Yes 5 7 2 2
R:R:M178 R:R:W210 4.65 1 Yes Yes 5 6 2 1
R:R:P182 R:R:Y202 9.74 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 23.64 1 No Yes 6 7 2 2
R:R:E293 R:R:M198 14.89 0 No Yes 4 3 1 2
R:R:Y202 R:R:Y206 5.96 1 Yes Yes 4 7 1 2
R:R:L207 R:R:Y202 3.52 1 No Yes 6 4 1 1
R:R:W210 R:R:Y206 5.79 1 Yes Yes 6 7 1 2
R:R:L207 R:R:L278 5.54 1 No No 6 6 1 1
R:R:W210 R:R:W271 4.69 1 Yes Yes 6 8 1 2
L:L:?1 R:R:G274 2.41 1 Yes No 0 5 0 1
R:R:G110 R:R:T109 1.82 0 No No 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YU8_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 274
Number of Links 307
Number of Hubs 37
Number of Links mediated by Hubs 146
Number of Communities 7
Number of Nodes involved in Communities 50
Number of Links involved in Communities 73
Path Summary
Number Of Nodes in MetaPath 69
Number Of Links MetaPath 68
Number of Shortest Paths 61757
Length Of Smallest Path 3
Average Path Length 13.9642
Length of Longest Path 32
Minimum Path Strength 1.235
Average Path Strength 6.98797
Maximum Path Strength 20.845
Minimum Path Correlation 0.7
Average Path Correlation 0.926365
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 47.9701
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.2759
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeK6L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeK6L
Name[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate
Synonyms
Identifier
FormulaC20 H34 N O6 P
Molecular Weight415.461
SMILES
PubChem141702624
Formal Charge0
Total Atoms62
Total Chiral Atoms1
Total Bonds62
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>7YU8_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 7YU8_nogp.zip



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