Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y34 5.10167616
2R:R:I57 3.125404
3R:R:I63 4.1508
4R:R:N67 5.192509
5R:R:F80 9.42333638
6R:R:L91 5.128529
7R:R:D95 6.084509
8R:R:Y102 10.956507
9R:R:L116 3.52416
10R:R:W121 8.43519
11R:R:R124 6.90286716
12R:R:Q125 10.015414
13R:R:D129 6.7675415
14R:R:V136 5.5725418
15R:R:L139 5.0325428
16R:R:L140 4.7125407
17R:R:H147 8.6275447
18R:R:F151 11.9975446
19R:R:V164 3.7325407
20R:R:W172 4.5675409
21R:R:M178 4.145415
22R:R:I189 3.99403
23R:R:Y202 8.05167614
24R:R:Y206 8.9517
25R:R:W210 5.14516
26R:R:N214 9.2925417
27R:R:M221 2.525409
28R:R:M253 3.985407
29R:R:F267 10.08419
30R:R:W271 7.37375818
31R:R:P273 4.37409
32R:R:D281 7.665404
33R:R:V282 4.165405
34R:R:V289 3.0125404
35R:R:Y311 5.19571729
36R:R:R314 10.1375457
37R:R:M318 6.7175408
38L:L:?1 8.323851310
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I189 R:R:L201 15.94284.28YesNo031
2R:R:F33 R:R:L201 28.96720.7NoNo061
3R:R:F33 R:R:I192 26.38313.77NoNo061
4R:R:I192 R:R:R36 18.57166.26NoNo013
5R:R:F32 R:R:R36 15.94787.48NoNo023
6R:R:E28 R:R:F32 13.31433.81NoNo042
7R:R:E28 R:R:F25 10.67023.5NoNo047
8R:R:L201 R:R:W121 46.479110.25NoYes019
9R:R:R124 R:R:W121 23.29958YesYes169
10L:L:?1 R:R:R124 36.74857.72YesYes106
11R:R:Q125 R:R:W121 24.199116.43YesYes149
12L:L:?1 R:R:Q125 22.42497.52YesYes104
13L:L:?1 R:R:E293 25.458523.38YesNo004
14R:R:E293 R:R:M198 24.044214.89NoNo043
15R:R:D281 R:R:M198 15.313111.09YesNo043
16R:R:L41 R:R:Y34 15.97282.34NoYes026
17R:R:L41 R:R:T43 12.85424.42NoNo023
18R:R:E44 R:R:T43 11.27991.41NoNo013
19L:L:?1 R:R:T109 11.0655.2YesNo105
20L:L:?1 R:R:L297 10.830116.61YesNo006
21R:R:C60 R:R:Y102 12.82425.38NoYes067
22R:R:C60 R:R:F103 11.23496.98NoNo066
23R:R:I63 R:R:S304 12.92924.64YesNo089
24L:L:?1 R:R:W210 91.69878.04YesYes106
25R:R:W210 R:R:W271 1004.69YesYes168
26R:R:N303 R:R:W271 85.44657.91NoYes098
27R:R:N303 R:R:N307 84.69696.81NoNo099
28R:R:D95 R:R:N307 74.49658.08YesNo099
29R:R:D95 R:R:N67 74.33658.08YesYes099
30R:R:A305 R:R:I63 14.77833.25NoYes078
31R:R:A92 R:R:N67 55.75994.69NoYes099
32R:R:A92 R:R:V70 52.76133.39NoNo099
33R:R:M318 R:R:V70 48.17334.56YesNo089
34R:R:F80 R:R:M318 43.700311.2YesYes088
35R:R:F80 R:R:Y85 30.786119.6YesNo089
36R:R:I84 R:R:Y85 27.46263.63NoNo089
37R:R:E145 R:R:I84 25.77349.56NoNo088
38R:R:E145 R:R:L87 16.03786.63NoNo088
39R:R:L87 R:R:V164 12.55442.98NoYes087
40R:R:L139 R:R:N307 41.93618.24YesNo089
41R:R:L139 R:R:Y311 16.11773.52YesYes289
42R:R:D95 R:R:L91 38.58765.43YesYes099
43R:R:L91 R:R:N138 30.99116.87YesNo098
44R:R:L139 R:R:L91 32.67035.54YesYes289
45R:R:N138 R:R:N90 22.334912.26NoNo089
46R:R:N90 R:R:W172 17.94696.78NoYes099
47R:R:F97 R:R:W172 11.28995.01NoYes079
48R:R:E301 R:R:Y102 12.424425.81NoYes077
49R:R:E301 R:R:L132 13.3496.63NoNo077
50R:R:M178 R:R:W210 11.28493.49YesYes156
51R:R:V136 R:R:W271 36.36364.9YesYes188
52R:R:T217 R:R:V136 39.84214.76NoYes078
53R:R:F267 R:R:W271 10.210416.04YesYes198
54R:R:L140 R:R:T217 39.16745.9YesNo077
55R:R:F151 R:R:H147 33.2915.84YesYes467
56R:R:H147 R:R:L224 62.94675.14YesNo076
57R:R:L224 R:R:V220 64.5362.98NoNo065
58R:R:L140 R:R:V220 66.11522.98YesNo075
59R:R:H147 R:R:I228 26.30823.98YesNo079
60R:R:F151 R:R:V150 24.92883.93YesNo068
61R:R:I228 R:R:V150 24.72397.68NoNo098
62R:R:L207 R:R:V282 10.40032.98NoYes065
63L:L:?1 R:R:L207 11.72473.91YesNo106
64R:R:F218 R:R:F267 12.104611.79NoYes059
65R:R:F218 R:R:I268 13.72883.77NoNo056
66R:R:F229 R:R:L256 32.54547.31NoNo067
67R:R:L256 R:R:V232 35.84894.47NoNo077
68R:R:V150 R:R:V232 46.08431.6NoNo087
69R:R:F229 R:R:M253 21.77522.49NoYes067
70R:R:I310 R:R:Y311 10.19043.63NoYes089
71R:R:I268 R:R:T272 10.68026.08NoNo065
72R:R:D281 R:R:V289 10.31044.38YesYes044
73R:R:L140 R:R:M221 41.56632.83YesYes079
74R:R:L139 R:R:M221 43.47542.83YesYes089
75R:R:I63 R:R:N67 13.02914.25YesYes089
76R:R:D95 R:R:S304 15.4785.89YesNo099
77L:L:?1 R:R:Y34 18.94653.31YesYes106
78R:R:L132 R:R:W271 13.2396.83NoYes178
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K39 R:R:Y34 10.75 1 No Yes 8 6 1 1
R:R:T113 R:R:Y34 7.49 0 No Yes 5 6 2 1
R:R:P200 R:R:Y34 5.56 0 No Yes 6 6 2 1
L:L:?1 R:R:Y34 3.31 1 Yes Yes 0 6 0 1
L:L:?1 R:R:K39 8.96 1 Yes No 0 8 0 1
R:R:K294 R:R:V52 13.66 1 No No 4 5 1 2
R:R:L297 R:R:Y102 9.38 0 No Yes 6 7 1 2
R:R:L105 R:R:R124 6.07 0 No Yes 6 6 2 1
R:R:N108 R:R:R124 8.44 0 No Yes 5 6 2 1
R:R:K294 R:R:T109 4.5 1 No No 4 5 1 1
L:L:?1 R:R:T109 5.2 1 Yes No 0 5 0 1
R:R:R124 R:R:T113 3.88 1 Yes No 6 5 1 2
R:R:L116 R:R:W121 3.42 1 Yes Yes 6 9 2 2
R:R:L116 R:R:R124 4.86 1 Yes Yes 6 6 2 1
R:R:R124 R:R:W121 8 1 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 16.43 1 Yes Yes 4 9 1 2
R:R:P200 R:R:W121 4.05 0 No Yes 6 9 2 2
R:R:Q125 R:R:R124 9.35 1 Yes Yes 4 6 1 1
L:L:?1 R:R:R124 7.72 1 Yes Yes 0 6 0 1
R:R:Q125 R:R:Y202 6.76 1 Yes Yes 4 4 1 1
L:L:?1 R:R:Q125 7.52 1 Yes Yes 0 4 0 1
R:R:D129 R:R:G126 5.03 1 Yes No 5 6 1 2
R:R:D129 R:R:Y202 9.2 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 8.05 1 Yes Yes 5 7 1 2
L:L:?1 R:R:D129 4.79 1 Yes Yes 0 5 0 1
R:R:L132 R:R:W210 3.42 1 No Yes 7 6 2 1
R:R:L132 R:R:W271 6.83 1 No Yes 7 8 2 2
R:R:M178 R:R:T133 4.52 1 Yes No 5 6 2 2
R:R:T133 R:R:W210 6.06 1 No Yes 6 6 2 1
R:R:M178 R:R:Y206 3.59 1 Yes Yes 5 7 2 2
R:R:M178 R:R:W210 3.49 1 Yes Yes 5 6 2 1
R:R:P182 R:R:Y202 11.13 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 18.08 1 No Yes 6 7 2 2
R:R:E293 R:R:M198 14.89 0 No No 4 3 1 2
R:R:A199 R:R:Y202 5.34 0 No Yes 4 4 2 1
R:R:Y202 R:R:Y206 10.92 1 Yes Yes 4 7 1 2
L:L:?1 R:R:Y202 4.96 1 Yes Yes 0 4 0 1
R:R:L207 R:R:L278 4.15 1 No No 6 6 1 1
L:L:?1 R:R:L207 3.91 1 Yes No 0 6 0 1
R:R:W210 R:R:W271 4.69 1 Yes Yes 6 8 1 2
L:L:?1 R:R:W210 8.04 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L278 6.84 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 23.38 1 Yes No 0 4 0 1
L:L:?1 R:R:K294 6.97 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 16.61 1 Yes No 0 6 0 1
R:R:L207 R:R:V282 2.98 1 No Yes 6 5 1 2
R:R:L41 R:R:Y34 2.34 0 No Yes 2 6 2 1
R:R:G110 R:R:T109 1.82 0 No No 5 5 2 1
R:R:A211 R:R:L278 1.58 0 No No 4 6 2 1
R:R:N35 R:R:Y34 1.16 0 No Yes 7 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YU5_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.25
Number of Linked Nodes 270
Number of Links 301
Number of Hubs 38
Number of Links mediated by Hubs 150
Number of Communities 5
Number of Nodes involved in Communities 38
Number of Links involved in Communities 56
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 52202
Length Of Smallest Path 3
Average Path Length 12.8434
Length of Longest Path 29
Minimum Path Strength 1.145
Average Path Strength 6.63292
Maximum Path Strength 20.645
Minimum Path Correlation 0.7
Average Path Correlation 0.929172
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 53.6745
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.2191
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeK6L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeK6L
Name[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate
Synonyms
Identifier
FormulaC20 H34 N O6 P
Molecular Weight415.461
SMILES
PubChem141702624
Formal Charge0
Total Atoms62
Total Chiral Atoms1
Total Bonds62
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>7YU5_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZFALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 7YU5_nogp.zip



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