Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.913331210
2R:R:F33 12.9725446
3R:R:Y34 4.212506
4R:R:N67 5.39409
5R:R:I74 3.522537
6R:R:F80 9.66333638
7R:R:P83 5.29456
8R:R:Y85 8.455439
9R:R:L91 4.856529
10R:R:D95 5.542509
11R:R:Y102 9.00333607
12R:R:G110 2.4225405
13R:R:W121 8.708519
14R:R:R124 6.56286716
15R:R:Q125 9.4475414
16R:R:D129 6.7675415
17R:R:V136 5.5725418
18R:R:N138 8.0425408
19R:R:L139 5.0325428
20R:R:I142 4.925428
21R:R:E145 5.88408
22R:R:H147 8.9575467
23R:R:F151 11.715466
24R:R:M178 4.52415
25R:R:I189 4.435403
26R:R:Y202 7.16286714
27R:R:Y206 8.734517
28R:R:W210 5.14516
29R:R:N214 9.01417
30R:R:Y225 6.28409
31R:R:F229 5.8925406
32R:R:V232 2.3125477
33R:R:F267 10.0625419
34R:R:W271 7.3575818
35R:R:P273 4.37409
36R:R:D281 7.655404
37R:R:V282 4.565405
38R:R:Y311 5.17286729
39R:R:M318 6.3375408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R124 28.77187.72YesYes106
2R:R:R124 R:R:W121 21.31568YesYes169
3R:R:L201 R:R:W121 36.09110.25NoYes019
4R:R:F33 R:R:L201 24.366120.7YesNo061
5R:R:E28 R:R:F33 14.671623.32NoYes446
6R:R:E28 R:R:F25 12.22552.33NoNo047
7L:L:?1 R:R:Q125 20.8157.52YesYes104
8R:R:Q125 R:R:W121 22.406415.33YesYes149
9R:R:I189 R:R:L201 10.01564.28YesNo031
10L:L:?1 R:R:K39 12.216111.94YesNo108
11R:R:K39 R:R:Y34 12.327.17NoYes086
12L:L:?1 R:R:T109 15.85216.24YesNo105
13R:R:G110 R:R:T109 14.74711.82YesNo055
14L:L:?1 R:R:L297 11.054414.65YesNo006
15R:R:C60 R:R:Y102 13.07554.03NoYes067
16R:R:C60 R:R:F103 11.646.98NoNo066
17L:L:?1 R:R:W210 82.54718.04YesYes106
18R:R:W210 R:R:W271 89.97974.69YesYes168
19R:R:N303 R:R:W271 1007.91NoYes098
20R:R:N303 R:R:N307 98.61176.81NoNo099
21R:R:D95 R:R:N307 66.1858.08YesNo099
22R:R:D95 R:R:S304 10.66725.89YesNo099
23R:R:D95 R:R:N67 53.72816.73YesYes099
24R:R:A92 R:R:N67 46.82914.69NoYes099
25R:R:A92 R:R:V70 45.67223.39NoNo099
26R:R:M318 R:R:V70 44.48693.04YesNo089
27R:R:F80 R:R:M318 39.906511.2YesYes088
28R:R:F80 R:R:Y85 25.541919.6YesYes389
29R:R:I84 R:R:Y85 23.33663.63NoYes089
30R:R:E145 R:R:I84 21.981410.93YesNo088
31R:R:E145 R:R:P83 12.82053.14YesYes086
32R:R:L139 R:R:N307 34.04648.24YesNo089
33R:R:L139 R:R:L91 17.81185.54YesYes289
34R:R:L139 R:R:Y311 16.98073.52YesYes289
35R:R:D95 R:R:L91 26.59964.07YesYes099
36R:R:L91 R:R:N138 34.1036.87YesYes098
37R:R:N138 R:R:N90 22.88812.26YesNo089
38R:R:N90 R:R:W172 18.33596.78NoNo099
39R:R:F97 R:R:W172 13.7466.01NoNo079
40R:R:E301 R:R:L132 13.5436.63NoNo077
41R:R:E301 R:R:Y102 12.735524.69NoYes077
42L:L:?1 R:R:Y202 10.79954.96YesYes104
43R:R:M178 R:R:W210 10.14783.49YesYes156
44R:R:V136 R:R:W271 51.82044.9YesYes188
45R:R:T217 R:R:V136 55.94754.76NoYes078
46R:R:L140 R:R:T217 51.24432.95NoNo077
47R:R:L140 R:R:V220 48.8362.98NoNo075
48R:R:L224 R:R:V220 47.61772.98NoNo065
49R:R:H147 R:R:L224 46.395.14YesNo076
50R:R:F151 R:R:H147 24.616315.84YesYes667
51R:R:F151 R:R:V150 18.11873.93YesNo068
52R:R:H147 R:R:I228 19.1675.3YesNo079
53R:R:I228 R:R:V150 17.96294.61NoNo098
54L:L:?1 R:R:E293 20.493923.38YesNo104
55R:R:E293 R:R:M198 20.635614.89NoNo043
56R:R:D281 R:R:M198 12.64589.7YesNo043
57L:L:?1 R:R:L278 11.39926.84YesNo006
58R:R:L207 R:R:L278 10.08645.54NoNo066
59R:R:F218 R:R:F267 11.583310.72NoYes059
60R:R:F218 R:R:I268 10.48783.77NoNo056
61R:R:V150 R:R:V232 33.27191.6NoYes087
62R:R:L256 R:R:V232 25.32944.47NoYes077
63R:R:F229 R:R:L256 22.79838.53YesNo067
64R:R:F229 R:R:M253 11.46536.22YesNo067
65R:R:L132 R:R:W271 13.34476.83NoYes178
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K39 11.94 1 Yes No 0 8 0 1
L:L:?1 R:R:L105 3.91 1 Yes No 0 6 0 1
L:L:?1 R:R:T109 6.24 1 Yes No 0 5 0 1
L:L:?1 R:R:R124 7.72 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q125 7.52 1 Yes Yes 0 4 0 1
L:L:?1 R:R:D129 4.79 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y202 4.96 1 Yes Yes 0 4 0 1
L:L:?1 R:R:W210 8.04 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L278 6.84 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 23.38 1 Yes No 0 4 0 1
L:L:?1 R:R:K294 6.97 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 14.65 1 Yes No 0 6 0 1
R:R:K39 R:R:Y34 7.17 1 No Yes 8 6 1 2
R:R:T113 R:R:Y34 3.75 0 No Yes 5 6 2 2
R:R:E293 R:R:K39 5.4 1 No No 4 8 1 1
R:R:K294 R:R:V52 13.66 1 No No 4 5 1 2
R:R:L297 R:R:Y102 9.38 0 No Yes 6 7 1 2
R:R:L105 R:R:R124 6.07 1 No Yes 6 6 1 1
R:R:I128 R:R:L105 7.14 0 No No 6 6 2 1
R:R:N108 R:R:R124 7.23 0 No Yes 5 6 2 1
R:R:K294 R:R:T109 7.51 1 No No 4 5 1 1
R:R:R124 R:R:T113 3.88 1 Yes No 6 5 1 2
R:R:L116 R:R:W121 4.56 1 No Yes 6 9 2 2
R:R:L116 R:R:R124 4.86 1 No Yes 6 6 2 1
R:R:R124 R:R:W121 8 1 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 15.33 1 Yes Yes 4 9 1 2
R:R:L122 R:R:Y202 3.52 0 No Yes 5 4 2 1
R:R:Q125 R:R:R124 8.18 1 Yes Yes 4 6 1 1
R:R:Q125 R:R:Y202 6.76 1 Yes Yes 4 4 1 1
R:R:D129 R:R:G126 5.03 1 Yes No 5 6 1 2
R:R:D129 R:R:Y202 8.05 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 9.2 1 Yes Yes 5 7 1 2
R:R:L132 R:R:W210 3.42 1 No Yes 7 6 2 1
R:R:L132 R:R:W271 6.83 1 No Yes 7 8 2 2
R:R:M178 R:R:T133 6.02 1 Yes No 5 6 2 2
R:R:T133 R:R:W210 6.06 1 No Yes 6 6 2 1
R:R:M178 R:R:Y206 3.59 1 Yes Yes 5 7 2 2
R:R:M178 R:R:W210 3.49 1 Yes Yes 5 6 2 1
R:R:P182 R:R:Y202 13.91 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 18.08 1 No Yes 6 7 2 2
R:R:E293 R:R:M198 14.89 1 No No 4 3 1 2
R:R:A199 R:R:Y202 4 0 No Yes 4 4 2 1
R:R:Y202 R:R:Y206 8.94 1 Yes Yes 4 7 1 2
R:R:L207 R:R:L278 5.54 0 No No 6 6 2 1
R:R:W210 R:R:W271 4.69 1 Yes Yes 6 8 1 2
R:R:G110 R:R:T109 1.82 0 Yes No 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YU6_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.25
Number of Linked Nodes 267
Number of Links 299
Number of Hubs 39
Number of Links mediated by Hubs 153
Number of Communities 8
Number of Nodes involved in Communities 49
Number of Links involved in Communities 69
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 47293
Length Of Smallest Path 3
Average Path Length 12.7632
Length of Longest Path 31
Minimum Path Strength 1.495
Average Path Strength 6.71958
Maximum Path Strength 22.01
Minimum Path Correlation 0.7
Average Path Correlation 0.925922
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 52.3119
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.0904
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeK6L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeK6L
Name[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate
Synonyms
Identifier
FormulaC20 H34 N O6 P
Molecular Weight415.461
SMILES
PubChem141702624
Formal Charge0
Total Atoms62
Total Chiral Atoms1
Total Bonds62
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>7YU6_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 7YU6_nogp.zip



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