Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.586671210
2R:R:Y34 4.94506
3R:R:N67 5.055409
4R:R:F80 7.195648
5R:R:L91 4.85529
6R:R:D95 5.546509
7R:R:Y102 8.905607
8R:R:W121 9.495419
9R:R:R124 6.63714716
10R:R:Q125 9.74414
11R:R:D129 6.06415
12R:R:V136 5.2025438
13R:R:N138 8.0425408
14R:R:H147 9.27457
15R:R:F151 11.69456
16R:R:V164 3.44407
17R:R:I189 3.99403
18R:R:Y202 7.16286714
19R:R:Y206 8.782517
20R:R:N214 9.205437
21R:R:Y225 5.5825409
22R:R:F267 9.01539
23R:R:W271 8.26571738
24R:R:P273 4.8075409
25R:R:D281 7.655404
26R:R:V282 4.165405
27R:R:F296 5.035405
28R:R:Y311 4.85429729
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R124 25.94936.86YesYes106
2R:R:R124 R:R:W121 17.05627YesYes169
3R:R:L201 R:R:W121 26.491310.25NoYes019
4R:R:F33 R:R:L201 15.415320.7NoNo061
5L:L:?1 R:R:Q125 15.90467.52YesYes104
6R:R:Q125 R:R:W121 16.209415.33YesYes149
7L:L:?1 R:R:E293 25.279423.38YesNo004
8R:R:E293 R:R:M198 24.282114.89NoNo043
9R:R:L277 R:R:M198 15.33255.65NoNo043
10R:R:F296 R:R:L277 14.30517.31YesNo054
11R:R:F295 R:R:F296 11.54641.07NoYes045
12L:L:?1 R:R:W210 75.88728.04YesNo006
13R:R:W210 R:R:W271 81.22394.69NoYes068
14R:R:N303 R:R:W271 1007.91NoYes098
15R:R:N303 R:R:N307 99.09686.81NoNo099
16R:R:D95 R:R:N307 44.40188.08YesNo099
17R:R:D95 R:R:S304 15.64495.89YesNo099
18R:R:I63 R:R:S304 11.32443.1NoNo089
19R:R:D95 R:R:N67 11.32445.39YesYes099
20R:R:L139 R:R:N307 54.57088.24NoNo089
21R:R:L139 R:R:Y311 30.04783.52NoYes289
22R:R:M88 R:R:Y311 21.80955.99NoYes089
23R:R:I84 R:R:M88 20.81224.37NoNo088
24R:R:I84 R:R:Y85 12.85613.63NoNo089
25R:R:F80 R:R:Y85 10.718518.57YesNo089
26R:R:D95 R:R:L91 30.80055.43YesYes099
27R:R:L91 R:R:N138 51.70676.87YesYes098
28R:R:N138 R:R:N90 42.862512.26YesNo089
29R:R:I168 R:R:N90 28.32038.5NoNo089
30R:R:I168 R:R:V164 26.46873.07NoYes087
31R:R:L139 R:R:L91 23.93964.15NoYes289
32R:R:P83 R:R:V164 13.29655.3NoYes067
33R:R:N90 R:R:W172 13.53736.78NoNo099
34R:R:E301 R:R:Y102 10.891625.81NoYes077
35L:L:?1 R:R:Y202 11.70074.96YesYes104
36R:R:L132 R:R:W271 12.14866.83NoYes078
37R:R:V136 R:R:W271 27.62794.9YesYes388
38R:R:T217 R:R:V136 29.65264.76NoYes078
39R:R:F267 R:R:W271 16.393817.04YesYes398
40R:R:L140 R:R:T217 25.52785.9NoNo077
41R:R:L140 R:R:V220 23.42032.98NoNo075
42R:R:L224 R:R:V220 22.35522.98NoNo065
43R:R:H147 R:R:L224 21.28267.71YesNo076
44R:R:F151 R:R:H147 18.057315.84YesYes567
45R:R:F151 R:R:V150 13.75943.93YesNo068
46R:R:W186 R:R:Y206 13.69543.86NoYes067
47R:R:S205 R:R:W186 10.97068.65NoNo056
48R:R:F218 R:R:F267 17.169111.79NoYes059
49R:R:F218 R:R:I268 14.09815.02NoNo056
50R:R:V150 R:R:V232 12.6191.6NoNo087
51R:R:I268 R:R:T272 12.08846.08NoNo065
52R:R:F296 R:R:P273 10.34218.67YesYes059
53R:R:P273 R:R:T272 10.77115.25YesNo095
54R:R:E301 R:R:L132 11.13246.63NoNo077
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K39 8.96 1 Yes No 0 8 0 1
L:L:?1 R:R:T109 5.2 1 Yes No 0 5 0 1
L:L:?1 R:R:R124 6.86 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q125 7.52 1 Yes Yes 0 4 0 1
L:L:?1 R:R:D129 4.79 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y202 4.96 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L207 3.91 1 Yes No 0 6 0 1
L:L:?1 R:R:W210 8.04 1 Yes No 0 6 0 1
L:L:?1 R:R:L278 6.84 1 Yes No 0 6 0 1
L:L:?1 R:R:E293 23.38 1 Yes No 0 4 0 1
L:L:?1 R:R:K294 5.97 1 Yes No 0 4 0 1
L:L:?1 R:R:L297 16.61 1 Yes No 0 6 0 1
R:R:K39 R:R:Y34 8.36 0 No Yes 8 6 1 2
R:R:T113 R:R:Y34 7.49 0 No Yes 5 6 2 2
R:R:K294 R:R:V52 13.66 1 No No 4 5 1 2
R:R:L105 R:R:Y102 3.52 0 No Yes 6 7 2 2
R:R:L297 R:R:Y102 5.86 0 No Yes 6 7 1 2
R:R:L105 R:R:R124 6.07 0 No Yes 6 6 2 1
R:R:N108 R:R:R124 8.44 0 No Yes 5 6 2 1
R:R:K294 R:R:T109 4.5 1 No No 4 5 1 1
R:R:R124 R:R:T113 3.88 1 Yes No 6 5 1 2
R:R:L116 R:R:R124 4.86 0 No Yes 6 6 2 1
R:R:R124 R:R:W121 7 1 Yes Yes 6 9 1 2
R:R:Q125 R:R:W121 15.33 1 Yes Yes 4 9 1 2
R:R:L122 R:R:Y202 3.52 0 No Yes 5 4 2 1
R:R:Q125 R:R:R124 9.35 1 Yes Yes 4 6 1 1
R:R:Q125 R:R:Y202 6.76 1 Yes Yes 4 4 1 1
R:R:D129 R:R:Y202 8.05 1 Yes Yes 5 4 1 1
R:R:D129 R:R:Y206 8.05 1 Yes Yes 5 7 1 2
R:R:T133 R:R:W210 6.06 0 No No 6 6 2 1
R:R:P182 R:R:Y202 13.91 1 No Yes 6 4 2 1
R:R:P182 R:R:Y206 19.47 1 No Yes 6 7 2 2
R:R:E293 R:R:M198 14.89 0 No No 4 3 1 2
R:R:A199 R:R:Y202 4 0 No Yes 4 4 2 1
R:R:Y202 R:R:Y206 8.94 1 Yes Yes 4 7 1 2
R:R:L207 R:R:L278 5.54 1 No No 6 6 1 1
R:R:W210 R:R:W271 4.69 0 No Yes 6 8 1 2
R:R:D129 R:R:G126 3.35 1 Yes No 5 6 1 2
R:R:L207 R:R:V282 2.98 1 No Yes 6 5 1 2
R:R:G110 R:R:T109 1.82 0 No No 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YU7_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 268
Number of Links 287
Number of Hubs 28
Number of Links mediated by Hubs 118
Number of Communities 6
Number of Nodes involved in Communities 30
Number of Links involved in Communities 41
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 47658
Length Of Smallest Path 3
Average Path Length 12.6248
Length of Longest Path 27
Minimum Path Strength 1.12
Average Path Strength 6.92493
Maximum Path Strength 19.995
Minimum Path Correlation 0.7
Average Path Correlation 0.925266
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 52.531
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 35.4661
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeK6L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeK6L
Name[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate
Synonyms
Identifier
FormulaC20 H34 N O6 P
Molecular Weight415.461
SMILES
PubChem141702624
Formal Charge0
Total Atoms62
Total Chiral Atoms1
Total Bonds62
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92633
Sequence
>7YU7_nogp_Chain_R
QCFYNESIA FFYNRSGKH LATEWNTVS KLVMGLGIT VCIFIMLAN 
LLVMVAIYV NRRFHFPIY YLMANLAAA DFFAGLAYF YLMFNTGPN 
TRRLTVSTW LLRQGLIDT SLTASVANL LAIAIERHI TVFRMQLHT 
RMSNRRVVV VIVVIWTMA IVMGAIPSV GWNCICDIE NCSNMAPLY 
SDSYLVFWA IFNLVTFVV MVVLYAHIF GYVRQRTMR MDTMMSLLK 
TVVIVLGAF IICWTPGLV LLLLDVCCP QCDVLAYEK FFLLLAEFN 
SAMNPIIYS YRDKEMSAT FR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4Z34ALipidLysophospholipidLPA1Homo sapiensONO-9780307--32015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z35ALipidLysophospholipidLPA1Homo sapiensONO-9910539--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
4Z36ALipidLysophospholipidLPA1Homo sapiensONO-3080573--2.92015-06-03doi.org/10.1016/j.cell.2015.06.002
9IZFALipidLysophospholipidLPA1Homo sapiensNKP-Gi1/β1/γ23.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZF (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.142025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZGALipidLysophospholipidLPA1Homo sapiensNKP-chim(NtGi1-Gs-CtGq)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZG (No Gprot) ALipidLysophospholipidLPA1Homo sapiensNKP-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164
7TD0ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ22.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD0 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-2.832022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD1 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.082022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2ALipidLysophospholipidLPA1Homo sapiensLPA-Gi1/β1/γ23.112022-02-09doi.org/10.1038/s41467-022-28417-2
7TD2 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.112022-02-09doi.org/10.1038/s41467-022-28417-2
7YU3ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU3 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU4ALipidLysophospholipidLPA1Homo sapiensONO-0740556--3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU5 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.72022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ23.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU6 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-3.92022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ24.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU7 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-4.52022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8ALipidLysophospholipidLPA1Homo sapiensONO-0740556-Gi1/β1/γ25.62022-10-05doi.org/10.1038/s41467-022-33121-2
7YU8 (No Gprot) ALipidLysophospholipidLPA1Homo sapiensONO-0740556-5.62022-10-05doi.org/10.1038/s41467-022-33121-2
9J5VALipidLysophospholipidLPA1Homo sapiensCpY-Gi1/β1/γ22.862024-11-27doi.org/10.1038/s42003-024-07152-y
9J5V (No Gprot) ALipidLysophospholipidLPA1Homo sapiensCpY-2.862024-11-27doi.org/10.1038/s42003-024-07152-y
9IZHALipidLysophospholipidLPA1Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.042025-01-01doi.org/10.1016/j.jsb.2024.108164
9IZH (No Gprot) ALipidLysophospholipidLPA1Homo sapiensLPA-3.042025-01-01doi.org/10.1016/j.jsb.2024.108164




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Download 7YU7_nogp.zip



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