Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Q116 7.7025474
2R:R:T130 4.142587
3R:R:E133 5.104588
4R:R:N134 3.285409
5R:R:Y153 7.2725459
6R:R:F155 3.6825438
7R:R:L159 4.492519
8R:R:I169 3.8025405
9R:R:F208 6.9275407
10R:R:D213 4.075439
11R:R:Y224 4.53437
12R:R:V228 2.945436
13R:R:W241 5.0654109
14R:R:P251 7.3675426
15R:R:H270 5.106523
16R:R:I271 5.75423
17R:R:D272 3.105425
18R:R:W279 3.5725446
19R:R:I280 3.356545
20R:R:I290 3.0725418
21R:R:Y294 4.3975819
22R:R:L345 5.39418
23R:R:W356 3.44143768
24R:R:M363 3.295446
25R:R:I375 3.366543
26R:R:T391 5.57487
27R:R:N393 5.1875419
28R:R:Y397 4.38286719
29W:W:?1 10.1656110
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I267 R:R:V110 24.08093.07NoNo043
2R:R:K376 R:R:V110 25.88783.04NoNo023
3R:R:K376 R:R:M371 31.258610.08NoNo021
4R:R:I375 R:R:M371 36.55448.75YesNo031
5R:R:F379 R:R:I375 48.05782.51NoYes443
6R:R:F379 R:R:M363 58.57862.49NoYes446
7R:R:M363 R:R:W279 28.39423.49YesYes466
8R:R:T283 R:R:W279 30.8883.64NoYes086
9R:R:T283 R:R:V204 31.23783.17NoNo087
10R:R:L286 R:R:V204 32.72414.47NoNo087
11R:R:F208 R:R:L286 32.80748.53YesNo078
12R:R:F208 R:R:I290 32.90733.77YesYes078
13R:R:I290 R:R:Y294 1002.42YesYes189
14R:R:Y294 R:R:Y397 77.34714.96YesYes199
15R:R:N393 R:R:Y397 55.22718.14YesYes199
16R:R:N393 R:R:P394 40.84271.63YesNo099
17R:R:N134 R:R:P394 37.87834.89YesNo099
18R:R:E133 R:R:N134 16.58693.94YesYes089
19R:R:I280 R:R:M363 27.97374.37YesYes456
20R:R:I280 R:R:L360 62.93774.28YesNo057
21R:R:L360 R:R:W356 63.44984.56NoYes078
22R:R:L287 R:R:W356 67.384.56NoYes068
23R:R:L287 R:R:L352 67.74645.54NoNo069
24R:R:I290 R:R:L352 68.12112.85YesNo089
25R:R:D163 R:R:S390 11.261911.78NoNo099
26R:R:D163 R:R:L159 11.22865.43NoYes099
27R:R:L159 R:R:N393 17.48625.49YesYes199
28R:R:L159 R:R:L207 15.77085.54YesNo198
29R:R:L207 R:R:Y397 16.48283.52NoYes189
30R:R:I141 R:R:L404 11.99472.85NoNo078
31R:R:I141 R:R:R148 13.03555.01NoNo078
32R:R:L142 R:R:R148 15.09227.29NoNo048
33R:R:L138 R:R:L142 16.10816.92NoNo074
34R:R:A160 R:R:L138 18.11481.58NoNo097
35R:R:A160 R:R:N134 20.08831.56NoYes099
36R:R:D213 R:R:F155 17.81512.39YesYes398
37R:R:D213 R:R:S152 49.47752.94YesNo098
38R:R:S152 R:R:T210 51.07621.6NoNo089
39R:R:R214 R:R:T210 20.06742.59NoNo199
40R:R:R214 R:R:Y294 20.6177.2NoYes199
41R:R:T210 R:R:Y397 32.57422.5NoYes199
42R:R:F155 R:R:L209 12.64427.31YesNo086
43R:R:L159 R:R:S206 13.96813YesNo098
44R:R:S158 R:R:S206 11.99474.89NoNo098
45R:R:L159 R:R:S203 11.97393YesNo099
46R:R:A162 R:R:S203 10.00041.71NoNo089
47R:R:I169 W:W:?1 10.69157.94YesYes050
48R:R:V249 W:W:?1 20.86272.76NoYes050
49R:R:L252 R:R:V249 23.02762.98NoNo055
50R:R:H270 R:R:L252 23.80622.57YesNo235
51R:R:D272 R:R:H270 27.51992.52YesYes253
52R:R:C257 R:R:D272 36.24211.56NoYes295
53R:R:C257 R:R:I271 37.06233.27NoYes293
54R:R:E273 R:R:I271 40.03915.47NoYes033
55R:R:E273 R:R:L276 40.96763.98NoNo035
56R:R:D176 R:R:F177 13.2273.58NoNo034
57R:R:F177 R:R:F189 16.86586.43NoNo049
58R:R:F189 R:R:F268 18.647717.15NoNo095
59R:R:F268 R:R:I267 22.265713.82NoNo054
60R:R:D176 R:R:R182 11.36182.38NoNo034
61R:R:A202 R:R:W241 12.03636.48NoYes079
62R:R:D213 R:R:Y224 22.69878.05YesYes397
63R:R:W299 R:R:Y296 12.66914.82NoNo034
64R:R:K300 R:R:W299 14.44693.48NoNo053
65R:R:I218 R:R:K300 16.07482.91NoNo095
66R:R:I218 R:R:S217 17.844.64NoNo098
67R:R:S217 R:R:Y224 19.59285.09NoYes087
68R:R:L345 R:R:Y294 15.97494.69YesYes189
69R:R:L298 R:R:L345 12.681611.07NoYes068
70R:R:L298 R:R:L341 10.21271.38NoNo068
71R:R:I280 R:R:L276 34.82242.85YesNo455
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I169 R:R:L165 4.28 0 Yes No 5 6 1 2
R:R:I169 W:W:?1 7.94 0 Yes Yes 5 0 1 0
R:R:F191 W:W:?1 31.63 0 No Yes 5 0 1 0
R:R:G194 R:R:G195 2.11 11 No No 6 4 1 1
R:R:G194 W:W:?1 4.76 11 No Yes 6 0 1 0
R:R:A198 R:R:G195 1.95 0 No No 5 4 2 1
R:R:G195 W:W:?1 9.52 11 No Yes 4 0 1 0
R:R:A198 R:R:A248 1.79 0 No No 5 7 2 1
R:R:A248 W:W:?1 4.38 0 No Yes 7 0 1 0
R:R:L252 R:R:V249 2.98 2 No No 5 5 2 1
R:R:V249 W:W:?1 2.76 0 No Yes 5 0 1 0
R:R:I169 R:R:V168 1.54 0 Yes No 5 4 1 2
R:R:L253 R:R:V249 1.49 0 No No 5 5 2 1
R:R:I169 R:R:K192 1.45 0 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IKG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.6
Number of Linked Nodes 247
Number of Links 273
Number of Hubs 29
Number of Links mediated by Hubs 113
Number of Communities 13
Number of Nodes involved in Communities 64
Number of Links involved in Communities 80
Path Summary
Number Of Nodes in MetaPath 72
Number Of Links MetaPath 71
Number of Shortest Paths 40054
Length Of Smallest Path 3
Average Path Length 16.3591
Length of Longest Path 37
Minimum Path Strength 1.315
Average Path Strength 4.28193
Maximum Path Strength 20.575
Minimum Path Correlation 0.7
Average Path Correlation 0.935375
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 47.8089
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.9415
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeQ2B
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeQ2B
Name3-[(1S)-1-(furan-2-yl)-2-nitro-ethyl]-2-phenyl-1H-indole
Synonyms
Identifier
FormulaC20 H16 N2 O3
Molecular Weight332.353
SMILES
PubChem703205
Formal Charge0
Total Atoms41
Total Chiral Atoms1
Total Bonds44
Total Aromatic Bonds21

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21554
Sequence
>8IKG_nogp_Chain_R
MVLNPSQQL AIAVLSLTL GTFTVLENL LVLCVILHS RSLRCRPSY 
HFIGSLAVA DLLGSVIFV YSFIDFHVF HRKDSRNVF LFKLGGVTA 
SFTASVGSL FLTAIDRYI SIHRPLAYK RIVTRPKAV VAFCLMWTI 
AIVIAVLPL LGWNCCSDI FPHIDETYL MFWIGVTSV LLLFIVYAY 
MYILWKAHS HAVRMIQRG TQKARMDIR LAKTLVLIL VVLIICWGP 
LLAIMVYDV FGKMNKLIK TVFAFCSML CLLNSTVNP IIYALRSKD 
LRHAF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7FEEALipidCannabinoidCB1Homo sapiensCP55940ZCZ011-2.72022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9ALipidCannabinoidCB1Homo sapiensCP55940ZCZ011Gi2/β1/γ23.362022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9 (No Gprot) ALipidCannabinoidCB1Homo sapiensCP55940ZCZ0113.362022-06-15doi.org/10.1038/s41589-022-01038-y
8IKHALipidCannabinoidCB1Homo sapiens-Q2LGi1/β1/γ13.32024-06-05doi.org/10.1073/pnas.2321532121
8IKH (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2L3.32024-06-05doi.org/10.1073/pnas.2321532121
8IKGALipidCannabinoidCB1Homo sapiens-Q2BGi1/β1/γ13.42024-06-05doi.org/10.1073/pnas.2321532121
8IKG (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2B3.42024-06-05doi.org/10.1073/pnas.2321532121
6KQIALipidCannabinoidCB1Homo sapiensCP55940Org27569-3.252019-10-23doi.org/10.1038/s41589-019-0387-2
8K8JALipidCannabinoidCB1Homo sapiensFenofibrate-chim(Gs-CtGq)/β1/γ22.882024-02-14doi.org/10.1002/advs.202306311
8K8J (No Gprot) ALipidCannabinoidCB1Homo sapiensFenofibrate-2.882024-02-14doi.org/10.1002/advs.202306311
5TGZALipidCannabinoidCB1Homo sapiensAM6538--2.82016-11-02doi.org/10.1016/j.cell.2016.10.004
6N4BALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-Gi1/β1/γ232019-01-30doi.org/10.1016/j.cell.2018.11.040
6N4B (No Gprot) ALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-32019-01-30doi.org/10.1016/j.cell.2018.11.040
6KPGALipidCannabinoidCB1Homo sapiensAM841-Gi1/β1/γ232020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPG (No Gprot) ALipidCannabinoidCB1Homo sapiensAM841-32020-02-12doi.org/10.1016/j.cell.2020.01.008
7V3ZALipidCannabinoidCB1Homo sapiensCP55940--3.292021-11-24doi.org/10.1021/jacs.1c06847
5U09ALipidCannabinoidCB1Homo sapiensTaranabant--2.62016-12-07doi.org/10.1038/nature20613
5XR8ALipidCannabinoidCB1Homo sapiensAM841--2.952017-07-12doi.org/10.1038/nature23272
5XRAALipidCannabinoidCB1Homo sapiensAM11542--2.82017-07-12doi.org/10.1038/nature23272
8GHVALipidCannabinoidCB1Homo sapiensAMG315-Gi1/β1/γ22.82023-05-24doi.org/10.1038/s41467-023-37864-4
8GHV (No Gprot) ALipidCannabinoidCB1Homo sapiensAMG315-2.82023-05-24doi.org/10.1038/s41467-023-37864-4
9B9ZALipidCannabinoidCB1Homo sapiensA1AKO--3.32024-11-20doi.org/10.1038/s41467-024-54206-0
9BA0ALipidCannabinoidCB1Homo sapiensA1AKN--3.132024-11-20doi.org/10.1038/s41467-024-54206-0
9B9YALipidCannabinoidCB1Homo sapiens7DY--3.52024-11-20doi.org/10.1038/s41467-024-54206-0
9B54ALipidCannabinoidCB1Homo sapiensA1AIW-Gi1/β1/γ22.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B54 (No Gprot) ALipidCannabinoidCB1Homo sapiensA1AIW-2.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B65ALipidCannabinoidCB1Homo sapiensKCA-Gi1/β1/γ23.032025-03-05doi.org/10.1038/s41586-025-08618-7
9B65 (No Gprot) ALipidCannabinoidCB1Homo sapiensKCA-3.032025-03-05doi.org/10.1038/s41586-025-08618-7
8WRZALipidCannabinoidCB1Homo sapiensPubChem 102336704-Arrestin23.62024-02-28doi.org/10.1093/procel/pwad055
9ERXALipidCannabinoidCB1Homo sapiensD9-THC analog-Gi1/β1/γ22.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
9ERX (No Gprot) ALipidCannabinoidCB1Homo sapiensD9-THC analog-2.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
8WU1ALipidCannabinoidCB1Homo sapiensPubChem 119025665-Arrestin23.22024-03-20doi.org/10.1016/j.cell.2023.11.017
9DGIALipidCannabinoidCB1Homo sapiensZ8526711350--3.352025-04-30doi.org/10.1038/s41467-025-57136-7
9EGOALipidCannabinoidCB1Homo sapiensYVF-Gi1/β1/γ23.22025-04-30doi.org/10.1038/s41467-025-57136-7
9EGO (No Gprot) ALipidCannabinoidCB1Homo sapiensYVF-3.22025-04-30doi.org/10.1038/s41467-025-57136-7
8GAGALipidCannabinoidCB1Homo sapiensPubChem 170838490-Gi1/β1/γ23.32024-02-28To be published
8GAG (No Gprot) ALipidCannabinoidCB1Homo sapiensPubChem 170838490-3.32024-02-28To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IKG_nogp.zip



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