Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.703851310
2R:R:T130 5.056557
3R:R:Y153 6.48569
4R:R:F155 4.355408
5R:R:F170 4.09517
6R:R:F174 4.36667615
7R:R:F189 3.452519
8R:R:K192 3.82416
9R:R:D213 4.5225479
10R:R:F237 2.11428
11R:R:M240 3.955426
12R:R:W241 4.8375429
13R:R:I267 6.04414
14R:R:F268 7.182515
15R:R:Y275 3.81407
16R:R:W279 5.825406
17R:R:L286 3.44408
18R:R:Y294 4.922509
19R:R:W356 3.78408
20R:R:M371 6.0875431
21R:R:F379 4.255414
22R:R:M384 3.51405
23R:R:L387 3.408507
24R:R:I396 3.1775489
25R:R:Y397 3.575489
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F177 22.34343.6YesNo004
2R:R:F177 R:R:M109 12.26268.71NoNo043
3L:L:?1 R:R:F174 19.78182.7YesYes105
4R:R:F174 R:R:H178 14.259310.18YesNo054
5R:R:H178 R:R:L111 19.51885.14NoNo044
6R:R:F177 R:R:H178 10.051610.18NoNo044
7R:R:L111 R:R:Q116 15.65215.32NoNo044
8R:R:Q116 R:R:V179 11.76594.3NoNo044
9L:L:?1 R:R:F170 49.28414.51YesYes107
10R:R:F170 R:R:L387 52.65412.44YesYes077
11R:R:G127 R:R:L387 47.4921.71NoYes067
12R:R:G127 R:R:T130 43.89791.82NoYes567
13R:R:N134 R:R:T130 37.14814.39NoYes097
14R:R:N134 R:R:P394 35.3564.89NoNo099
15R:R:P394 R:R:V137 31.71331.77NoNo099
16R:R:A398 R:R:V137 29.86271.7NoNo079
17R:R:A398 R:R:L404 27.99261.58NoNo078
18R:R:L404 R:R:Y153 26.083610.55NoYes089
19R:R:R150 R:R:Y153 12.379512.35NoYes659
20R:R:P151 R:R:R150 10.50942.88NoNo055
21L:L:?1 R:R:F268 92.217825.23YesYes105
22R:R:F268 R:R:F379 83.0723.22YesYes154
23R:R:F379 R:R:I362 1003.77YesNo044
24R:R:C382 R:R:I362 99.61043.27NoNo054
25R:R:C382 R:R:P358 99.20131.88NoNo059
26R:R:L385 R:R:P358 98.32474.93NoNo079
27R:R:L359 R:R:L385 97.85722.77NoNo077
28R:R:L359 R:R:L360 97.37022.77NoNo077
29R:R:L360 R:R:W356 96.86373.42NoYes078
30R:R:V204 R:R:W356 92.7734.9NoYes078
31R:R:L286 R:R:V204 92.11064.47YesNo087
32R:R:G205 R:R:L286 87.72771.71NoYes058
33R:R:G205 R:R:M240 86.9291.75NoYes056
34R:R:M240 R:R:S206 78.27994.6YesNo068
35R:R:L159 R:R:S206 77.85146.01NoNo098
36R:R:L159 R:R:Y397 76.73133.52NoYes099
37R:R:I348 R:R:Y397 68.37443.63NoYes889
38R:R:I348 R:R:L349 68.86142.85NoNo088
39R:R:L349 R:R:Y294 65.173.52NoYes089
40R:R:L345 R:R:Y294 58.955910.55NoYes089
41R:R:I297 R:R:L345 54.74822.85NoNo098
42R:R:I218 R:R:I297 34.68394.42NoNo099
43R:R:I218 R:R:S217 20.90191.55NoNo098
44R:R:S217 R:R:Y224 19.07085.09NoNo087
45R:R:D213 R:R:Y224 13.2956.9YesNo797
46L:L:?1 R:R:F189 17.57095.41YesYes109
47R:R:D184 R:R:F189 11.56131.19NoYes029
48R:R:F268 R:R:I271 16.91832.51YesNo053
49L:L:?1 R:R:T197 13.889210.9YesNo006
50R:R:A248 R:R:T197 12.20413.36NoNo076
51R:R:I218 R:R:K300 13.71382.91NoNo095
52R:R:K300 R:R:Y296 11.84384.78NoNo054
53R:R:I271 R:R:Y275 21.13573.63NoYes037
54R:R:F268 R:R:I267 15.33072.51YesYes154
55R:R:D366 R:R:I267 15.369611.2NoYes044
56R:R:I267 R:R:K376 11.53212.91YesNo042
57R:R:I297 R:R:L341 22.9571.43NoNo098
58R:R:A301 R:R:L341 21.18441.58NoNo088
59R:R:A301 R:R:M337 19.34351.61NoNo086
60R:R:F379 R:R:I267 13.20747.54YesYes144
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F170 4.51 1 Yes Yes 0 7 0 1
L:L:?1 R:R:S173 6.66 1 Yes No 0 4 0 1
L:L:?1 R:R:F174 2.7 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F177 3.6 1 Yes No 0 4 0 1
L:L:?1 R:R:F189 5.41 1 Yes Yes 0 9 0 1
L:L:?1 R:R:K192 2.09 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L193 6.14 1 Yes No 0 4 0 1
L:L:?1 R:R:V196 2.2 1 Yes No 0 7 0 1
L:L:?1 R:R:T197 10.9 1 Yes No 0 6 0 1
L:L:?1 R:R:F268 25.23 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L276 2.05 1 Yes No 0 5 0 1
L:L:?1 R:R:W279 10.11 1 Yes Yes 0 6 0 1
L:L:?1 R:R:S383 5.55 1 Yes No 0 6 0 1
R:R:F177 R:R:M109 8.71 0 No No 4 3 1 2
R:R:F174 R:R:I119 3.77 1 Yes No 5 5 1 2
R:R:F170 R:R:F174 4.29 1 Yes Yes 7 5 1 1
R:R:F170 R:R:V196 3.93 1 Yes No 7 7 1 1
R:R:F170 R:R:S383 5.28 1 Yes No 7 6 1 1
R:R:F170 R:R:L387 2.44 1 Yes Yes 7 7 1 2
R:R:K192 R:R:S173 9.18 1 Yes No 6 4 1 1
R:R:F174 R:R:H178 10.18 1 Yes No 5 4 1 2
R:R:A380 R:R:F174 2.77 0 No Yes 4 5 2 1
R:R:F174 R:R:M384 2.49 1 Yes Yes 5 5 1 2
R:R:D176 R:R:K192 2.77 0 No Yes 3 6 2 1
R:R:F177 R:R:H178 10.18 0 No No 4 4 1 2
R:R:F189 R:R:L190 2.44 1 Yes No 9 5 1 2
R:R:F189 R:R:L193 2.44 1 Yes No 9 4 1 1
R:R:F189 R:R:P269 5.78 1 Yes No 9 3 1 2
R:R:I271 R:R:L193 4.28 0 No No 3 4 2 1
R:R:F200 R:R:V196 2.62 0 No No 7 7 2 1
R:R:A248 R:R:T197 3.36 0 No No 7 6 2 1
R:R:F268 R:R:I267 2.51 1 Yes Yes 5 4 1 2
R:R:F379 R:R:I267 7.54 1 Yes Yes 4 4 2 2
R:R:F268 R:R:I271 2.51 1 Yes No 5 3 1 2
R:R:F268 R:R:L276 2.44 1 Yes No 5 5 1 1
R:R:F268 R:R:F379 3.22 1 Yes Yes 5 4 1 2
R:R:T283 R:R:W279 8.49 0 No Yes 8 6 2 1
R:R:M363 R:R:W279 3.49 0 No Yes 6 6 2 1
R:R:F379 R:R:M363 2.49 1 Yes No 4 6 2 2
R:R:L387 R:R:M384 5.65 0 Yes Yes 7 5 2 2
R:R:I169 R:R:S173 1.55 0 No No 5 4 2 1
R:R:L276 R:R:V367 1.49 1 No No 5 4 1 2
R:R:F191 R:R:K192 1.24 0 No Yes 5 6 2 1
R:R:T201 R:R:W279 1.21 0 No Yes 6 6 2 1
R:R:D184 R:R:F189 1.19 0 No Yes 2 9 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9EGO_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.71
Number of Linked Nodes 225
Number of Links 238
Number of Hubs 25
Number of Links mediated by Hubs 100
Number of Communities 9
Number of Nodes involved in Communities 40
Number of Links involved in Communities 48
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 21667
Length Of Smallest Path 3
Average Path Length 16.1739
Length of Longest Path 45
Minimum Path Strength 1.19
Average Path Strength 4.65335
Maximum Path Strength 14.61
Minimum Path Correlation 0.7
Average Path Correlation 0.924627
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.77778
Average % Of Corr. Nodes 45.3717
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.6699
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeYVF
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeYVF
Namemethyl (2R)-2-({(1M)-5-methyl-1-[3-(trifluoromethyl)phenyl]-1H-pyrazole-3-carbonyl}amino)-2-(thiophen-2-yl)propanoate
Synonyms
Identifier
FormulaC20 H18 F3 N3 O3 S
Molecular Weight437.435
SMILES
PubChem170838490
Formal Charge0
Total Atoms48
Total Chiral Atoms1
Total Bonds50
Total Aromatic Bonds16

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21554
Sequence
>9EGO_nogp_Chain_R
FMVLNPSQQ LAIAVLSLT LGTFTVLEN LLVLCVIRC RPSYHFIGS 
LAVADLLGS VIFVYSFID FHVFHRKDS RNVFLFKLG GVTASFTAS 
VGSLFLTAI DRYISIHRP LAYKRIVTR PKAVVAFCL MWTIAIVIA 
VLPLLDIFP HIDETYLMF WIGVTSVLL LFIVYAYMY ILWKAHSHA 
VRMIQRGTA RMDIRLAKT LVLILVVLI ICWGPLLAI MVYDVFGKM 
NKLIKTVFA FCSMLCLLN STVNPIIYA LRSKDLRHA FRSM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7FEEALipidCannabinoidCB1Homo sapiensCP55940ZCZ011-2.72022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9ALipidCannabinoidCB1Homo sapiensCP55940ZCZ011Gi2/β1/γ23.362022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9 (No Gprot) ALipidCannabinoidCB1Homo sapiensCP55940ZCZ0113.362022-06-15doi.org/10.1038/s41589-022-01038-y
8IKHALipidCannabinoidCB1Homo sapiens-Q2LGi1/β1/γ13.32024-06-05doi.org/10.1073/pnas.2321532121
8IKH (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2L3.32024-06-05doi.org/10.1073/pnas.2321532121
8IKGALipidCannabinoidCB1Homo sapiens-Q2BGi1/β1/γ13.42024-06-05doi.org/10.1073/pnas.2321532121
8IKG (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2B3.42024-06-05doi.org/10.1073/pnas.2321532121
6KQIALipidCannabinoidCB1Homo sapiensCP55940Org27569-3.252019-10-23doi.org/10.1038/s41589-019-0387-2
8K8JALipidCannabinoidCB1Homo sapiensFenofibrate-chim(Gs-CtGq)/β1/γ22.882024-02-14doi.org/10.1002/advs.202306311
8K8J (No Gprot) ALipidCannabinoidCB1Homo sapiensFenofibrate-2.882024-02-14doi.org/10.1002/advs.202306311
5TGZALipidCannabinoidCB1Homo sapiensAM6538--2.82016-11-02doi.org/10.1016/j.cell.2016.10.004
6N4BALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-Gi1/β1/γ232019-01-30doi.org/10.1016/j.cell.2018.11.040
6N4B (No Gprot) ALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-32019-01-30doi.org/10.1016/j.cell.2018.11.040
6KPGALipidCannabinoidCB1Homo sapiensAM841-Gi1/β1/γ232020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPG (No Gprot) ALipidCannabinoidCB1Homo sapiensAM841-32020-02-12doi.org/10.1016/j.cell.2020.01.008
7V3ZALipidCannabinoidCB1Homo sapiensCP55940--3.292021-11-24doi.org/10.1021/jacs.1c06847
5U09ALipidCannabinoidCB1Homo sapiensTaranabant--2.62016-12-07doi.org/10.1038/nature20613
5XR8ALipidCannabinoidCB1Homo sapiensAM841--2.952017-07-12doi.org/10.1038/nature23272
5XRAALipidCannabinoidCB1Homo sapiensAM11542--2.82017-07-12doi.org/10.1038/nature23272
8GHVALipidCannabinoidCB1Homo sapiensAMG315-Gi1/β1/γ22.82023-05-24doi.org/10.1038/s41467-023-37864-4
8GHV (No Gprot) ALipidCannabinoidCB1Homo sapiensAMG315-2.82023-05-24doi.org/10.1038/s41467-023-37864-4
9B9ZALipidCannabinoidCB1Homo sapiensA1AKO--3.32024-11-20doi.org/10.1038/s41467-024-54206-0
9BA0ALipidCannabinoidCB1Homo sapiensA1AKN--3.132024-11-20doi.org/10.1038/s41467-024-54206-0
9B9YALipidCannabinoidCB1Homo sapiens7DY--3.52024-11-20doi.org/10.1038/s41467-024-54206-0
9B54ALipidCannabinoidCB1Homo sapiensA1AIW-Gi1/β1/γ22.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B54 (No Gprot) ALipidCannabinoidCB1Homo sapiensA1AIW-2.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B65ALipidCannabinoidCB1Homo sapiensKCA-Gi1/β1/γ23.032025-03-05doi.org/10.1038/s41586-025-08618-7
9B65 (No Gprot) ALipidCannabinoidCB1Homo sapiensKCA-3.032025-03-05doi.org/10.1038/s41586-025-08618-7
8WRZALipidCannabinoidCB1Homo sapiensPubChem 102336704-Arrestin23.62024-02-28doi.org/10.1093/procel/pwad055
9ERXALipidCannabinoidCB1Homo sapiensD9-THC analog-Gi1/β1/γ22.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
9ERX (No Gprot) ALipidCannabinoidCB1Homo sapiensD9-THC analog-2.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
8WU1ALipidCannabinoidCB1Homo sapiensPubChem 119025665-Arrestin23.22024-03-20doi.org/10.1016/j.cell.2023.11.017
9DGIALipidCannabinoidCB1Homo sapiensZ8526711350--3.352025-04-30doi.org/10.1038/s41467-025-57136-7
9EGOALipidCannabinoidCB1Homo sapiensYVF-Gi1/β1/γ23.22025-04-30doi.org/10.1038/s41467-025-57136-7
9EGO (No Gprot) ALipidCannabinoidCB1Homo sapiensYVF-3.22025-04-30doi.org/10.1038/s41467-025-57136-7
8GAGALipidCannabinoidCB1Homo sapiensPubChem 170838490-Gi1/β1/γ23.32024-02-28To be published
8GAG (No Gprot) ALipidCannabinoidCB1Homo sapiensPubChem 170838490-3.32024-02-28To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9EGO_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.