Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L111 3.7975444
2R:R:N112 5.0675446
3R:R:Q115 6.7725442
4R:R:Q116 5.872544
5R:R:T130 3.6875407
6R:R:N134 4.104509
7R:R:P151 2.7275415
8R:R:H154 2.625413
9R:R:F155 3.8075418
10R:R:L159 4.995469
11R:R:D163 7.015469
12R:R:F200 2.8625407
13R:R:Y215 9.6225438
14R:R:Y224 4.5125417
15R:R:V228 3.375416
16R:R:W241 4.8175409
17R:R:Y275 9.085407
18R:R:I280 4.535405
19R:R:L286 4.59408
20R:R:Y294 5.69509
21R:R:Y296 8.9575434
22R:R:K300 4.0525435
23R:R:D338 3.7025407
24R:R:W356 4.9628
25R:R:L359 3.5407
26R:R:T391 4.55407
27R:R:Y397 4.806509
28R:R:L404 4.4458
29W:W:?1 9.13875870
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I119 R:R:Q116 22.4262.74NoYes054
2R:R:I119 R:R:M384 28.22495.83NoNo055
3R:R:T130 R:R:T391 16.58784.71YesYes077
4R:R:S390 R:R:T130 21.76531.6NoYes097
5R:R:D163 R:R:S390 28.23478.83YesNo099
6R:R:D163 R:R:L159 55.05925.43YesYes699
7R:R:L159 R:R:L207 59.04345.54YesNo098
8R:R:L207 R:R:Y397 60.13814.69NoYes089
9R:R:N393 R:R:Y397 63.31363.49NoYes099
10R:R:N389 R:R:N393 63.35314.09NoNo099
11R:R:N389 R:R:W356 62.85019.04NoYes298
12R:R:L360 R:R:W356 1004.56NoYes078
13R:R:L359 R:R:L360 90.23674.15YesNo077
14R:R:F379 R:R:L359 33.70812.44NoYes047
15R:R:F379 R:R:S383 32.02173.96NoNo046
16R:R:M384 R:R:S383 30.14791.53NoNo056
17R:R:N134 R:R:P394 303.26YesNo099
18R:R:D163 R:R:P394 31.58786.44YesNo099
19R:R:N134 R:R:V137 14.82252.96YesNo099
20R:R:A398 R:R:V137 13.03753.39NoNo079
21R:R:A398 R:R:L404 11.23271.58NoYes078
22R:R:P151 R:R:R150 10.86781.44YesNo155
23R:R:P151 R:R:V228 28.69823.53YesYes156
24R:R:I216 R:R:V228 25.30573.07NoYes056
25R:R:I212 R:R:I216 26.44972.94NoNo075
26R:R:F208 R:R:I212 27.20917.54NoNo077
27R:R:F208 R:R:L286 28.885612.18NoYes078
28R:R:L286 R:R:V204 34.54642.98YesNo087
29R:R:V204 R:R:W356 35.36493.68NoYes278
30R:R:H154 R:R:P151 10.6413.05YesYes135
31R:R:R214 R:R:Y397 49.95076.17NoYes099
32R:R:W241 W:W:?1 12.67262.89YesYes090
33R:R:I169 W:W:?1 28.22493.62NoYes050
34R:R:I169 R:R:V196 29.87183.07NoNo057
35R:R:F200 R:R:V196 31.72582.62YesNo077
36R:R:C386 R:R:F200 65.09864.19NoYes077
37R:R:C386 R:R:L359 66.55823.17NoYes077
38R:R:F200 R:R:W279 33.84622YesNo076
39R:R:T197 R:R:W279 24.69437.28NoNo066
40R:R:T197 R:R:Y275 20.7893.75NoYes067
41R:R:R214 R:R:Y294 49.28997.2NoYes099
42R:R:L349 R:R:Y294 24.339310.55NoYes089
43R:R:L349 R:R:V291 24.2111.49NoNo085
44R:R:L352 R:R:V291 23.8561.49NoNo095
45R:R:L287 R:R:L352 24.32945.54NoNo069
46R:R:L287 R:R:W356 25.51284.56NoYes068
47R:R:V228 R:R:Y224 23.08682.52YesYes167
48R:R:K300 R:R:Y296 17.43595.97YesYes354
49R:R:I218 R:R:K300 51.50892.91NoYes095
50R:R:I218 R:R:I297 61.96254.42NoNo099
51R:R:I297 R:R:Y294 63.54042.42NoYes099
52R:R:S217 R:R:Y224 24.26045.09NoYes087
53R:R:I218 R:R:S217 25.38464.64NoNo098
54R:R:I280 R:R:L360 18.80675.71YesNo057
55R:R:A301 R:R:L341 17.50491.58NoNo088
56R:R:L341 R:R:M337 19.94081.41NoNo086
57R:R:H304 R:R:M337 22.08093.94NoNo076
58R:R:H304 R:R:R307 26.84421.13NoNo074
59R:R:R307 R:R:S303 29.19131.32NoNo045
60R:R:K300 R:R:S303 31.51871.53YesNo055
61R:R:A301 R:R:D338 15.03943.09NoYes087
62R:R:T391 R:R:V392 11.23273.17YesNo076
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:A162 R:R:W241 2.59 0 No Yes 8 9 2 1
R:R:L165 W:W:?1 8.19 0 No Yes 6 0 1 0
R:R:G166 R:R:I169 3.53 0 No No 8 5 2 1
R:R:I169 R:R:V196 3.07 0 No No 5 7 1 2
R:R:I169 W:W:?1 3.62 0 No Yes 5 0 1 0
R:R:F191 W:W:?1 28.84 0 No Yes 5 0 1 0
R:R:G194 R:R:G195 2.11 7 No No 6 4 1 1
R:R:G194 W:W:?1 2.89 7 No Yes 6 0 1 0
R:R:G195 W:W:?1 13.02 7 No Yes 4 0 1 0
R:R:A202 R:R:W241 7.78 0 No Yes 7 9 2 1
R:R:F237 R:R:W241 6.01 0 No Yes 8 9 2 1
R:R:W241 W:W:?1 2.89 0 Yes Yes 9 0 1 0
R:R:I245 W:W:?1 9.66 0 No Yes 4 0 1 0
R:R:A248 W:W:?1 4 0 No Yes 7 0 1 0
R:R:A198 R:R:G195 1.95 0 No No 5 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IKH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2
Number of Linked Nodes 236
Number of Links 243
Number of Hubs 29
Number of Links mediated by Hubs 110
Number of Communities 8
Number of Nodes involved in Communities 36
Number of Links involved in Communities 43
Path Summary
Number Of Nodes in MetaPath 63
Number Of Links MetaPath 62
Number of Shortest Paths 20187
Length Of Smallest Path 3
Average Path Length 13.9403
Length of Longest Path 29
Minimum Path Strength 1.225
Average Path Strength 4.42666
Maximum Path Strength 20.93
Minimum Path Correlation 0.7
Average Path Correlation 0.921137
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 47.1097
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.4835
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeQ2L
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeQ2L
Name3-[(1R)-1-(2-methoxyphenyl)-2-nitro-ethyl]-2-phenyl-1H-indole
Synonyms
Identifier
FormulaC23 H20 N2 O3
Molecular Weight372.417
SMILES
PubChem171393541
Formal Charge0
Total Atoms48
Total Chiral Atoms1
Total Bonds51
Total Aromatic Bonds22

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21554
Sequence
>8IKH_nogp_Chain_R
ECFMVLNPS QQLAIAVLS LTLGTFTVL ENLLVLCVI LHSRSLRCR 
PSYHFIGSL AVADLLGSV IFVYSFIDF HRKDSRNVF LFKLGGVTA 
SFTASVGSL FLTAIDRYI SIHRPLAYK RIVTRPKAV VAFCLMWTI 
AIVIAVLPL LGWNCIDET YLMFWIGVT SVLLLFIVY AYMYILWKA 
HSHAVRMIQ RGARMDIRL AKTLVLILV VLIICWGPL LAIMVYDVF 
GKMNKLIKT VFAFCSMLC LLNSTVNPI IYALRSKDL RHAF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7FEEALipidCannabinoidCB1Homo sapiensCP55940ZCZ011-2.72022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9ALipidCannabinoidCB1Homo sapiensCP55940ZCZ011Gi2/β1/γ23.362022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9 (No Gprot) ALipidCannabinoidCB1Homo sapiensCP55940ZCZ0113.362022-06-15doi.org/10.1038/s41589-022-01038-y
8IKHALipidCannabinoidCB1Homo sapiens-Q2LGi1/β1/γ13.32024-06-05doi.org/10.1073/pnas.2321532121
8IKH (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2L3.32024-06-05doi.org/10.1073/pnas.2321532121
8IKGALipidCannabinoidCB1Homo sapiens-Q2BGi1/β1/γ13.42024-06-05doi.org/10.1073/pnas.2321532121
8IKG (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2B3.42024-06-05doi.org/10.1073/pnas.2321532121
6KQIALipidCannabinoidCB1Homo sapiensCP55940Org27569-3.252019-10-23doi.org/10.1038/s41589-019-0387-2
8K8JALipidCannabinoidCB1Homo sapiensFenofibrate-chim(Gs-CtGq)/β1/γ22.882024-02-14doi.org/10.1002/advs.202306311
8K8J (No Gprot) ALipidCannabinoidCB1Homo sapiensFenofibrate-2.882024-02-14doi.org/10.1002/advs.202306311
5TGZALipidCannabinoidCB1Homo sapiensAM6538--2.82016-11-02doi.org/10.1016/j.cell.2016.10.004
6N4BALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-Gi1/β1/γ232019-01-30doi.org/10.1016/j.cell.2018.11.040
6N4B (No Gprot) ALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-32019-01-30doi.org/10.1016/j.cell.2018.11.040
6KPGALipidCannabinoidCB1Homo sapiensAM841-Gi1/β1/γ232020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPG (No Gprot) ALipidCannabinoidCB1Homo sapiensAM841-32020-02-12doi.org/10.1016/j.cell.2020.01.008
7V3ZALipidCannabinoidCB1Homo sapiensCP55940--3.292021-11-24doi.org/10.1021/jacs.1c06847
5U09ALipidCannabinoidCB1Homo sapiensTaranabant--2.62016-12-07doi.org/10.1038/nature20613
5XR8ALipidCannabinoidCB1Homo sapiensAM841--2.952017-07-12doi.org/10.1038/nature23272
5XRAALipidCannabinoidCB1Homo sapiensAM11542--2.82017-07-12doi.org/10.1038/nature23272
8GHVALipidCannabinoidCB1Homo sapiensAMG315-Gi1/β1/γ22.82023-05-24doi.org/10.1038/s41467-023-37864-4
8GHV (No Gprot) ALipidCannabinoidCB1Homo sapiensAMG315-2.82023-05-24doi.org/10.1038/s41467-023-37864-4
9B9ZALipidCannabinoidCB1Homo sapiensA1AKO--3.32024-11-20doi.org/10.1038/s41467-024-54206-0
9BA0ALipidCannabinoidCB1Homo sapiensA1AKN--3.132024-11-20doi.org/10.1038/s41467-024-54206-0
9B9YALipidCannabinoidCB1Homo sapiens7DY--3.52024-11-20doi.org/10.1038/s41467-024-54206-0
9B54ALipidCannabinoidCB1Homo sapiensA1AIW-Gi1/β1/γ22.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B54 (No Gprot) ALipidCannabinoidCB1Homo sapiensA1AIW-2.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B65ALipidCannabinoidCB1Homo sapiensKCA-Gi1/β1/γ23.032025-03-05doi.org/10.1038/s41586-025-08618-7
9B65 (No Gprot) ALipidCannabinoidCB1Homo sapiensKCA-3.032025-03-05doi.org/10.1038/s41586-025-08618-7
8WRZALipidCannabinoidCB1Homo sapiensPubChem 102336704-Arrestin23.62024-02-28doi.org/10.1093/procel/pwad055
9ERXALipidCannabinoidCB1Homo sapiensD9-THC analog-Gi1/β1/γ22.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
9ERX (No Gprot) ALipidCannabinoidCB1Homo sapiensD9-THC analog-2.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
8WU1ALipidCannabinoidCB1Homo sapiensPubChem 119025665-Arrestin23.22024-03-20doi.org/10.1016/j.cell.2023.11.017
9DGIALipidCannabinoidCB1Homo sapiensZ8526711350--3.352025-04-30doi.org/10.1038/s41467-025-57136-7
9EGOALipidCannabinoidCB1Homo sapiensYVF-Gi1/β1/γ23.22025-04-30doi.org/10.1038/s41467-025-57136-7
9EGO (No Gprot) ALipidCannabinoidCB1Homo sapiensYVF-3.22025-04-30doi.org/10.1038/s41467-025-57136-7
8GAGALipidCannabinoidCB1Homo sapiensPubChem 170838490-Gi1/β1/γ23.32024-02-28To be published
8GAG (No Gprot) ALipidCannabinoidCB1Homo sapiensPubChem 170838490-3.32024-02-28To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IKH_nogp.zip



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