Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.405621610
2R:R:M109 7.25403
3R:R:T130 5.728527
4R:R:N134 6.514529
5R:R:Y153 5.775609
6R:R:F155 5.42458
7R:R:L159 4.255409
8R:R:D163 11.035429
9R:R:S173 4.635414
10R:R:T197 4.6225416
11R:R:F200 7.6975417
12R:R:A223 1.8375405
13R:R:F237 4.844558
14R:R:I267 9.0375414
15R:R:F268 9.295415
16R:R:Y275 6.06429717
17R:R:W279 5.8175416
18R:R:Y294 5.098509
19R:R:D338 4.244507
20R:R:I348 3.935468
21R:R:W356 8.238518
22R:R:L387 3.75517
23R:R:N389 6.2425419
24R:R:I396 4.174569
25R:R:Y397 3.91569
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:K192 24.515610.79YesNo106
2R:R:F177 R:R:K192 23.60592.48NoNo046
3R:R:F177 R:R:M109 11.34362.49NoYes043
4L:L:?1 R:R:F268 23.569514.64YesYes105
5R:R:F268 R:R:I267 23.251216.33YesYes154
6R:R:I267 R:R:M371 13.93612.92YesNo141
7R:R:D266 R:R:M371 12.107716.63NoNo041
8R:R:D266 R:R:K376 10.133711.06NoNo042
9L:L:?1 R:R:F200 16.173917.97YesYes107
10R:R:F170 R:R:F200 14.69123.22NoYes177
11L:L:?1 R:R:N389 89.43873.75YesYes109
12R:R:N389 R:R:N393 1006.81YesNo099
13R:R:I396 R:R:N393 87.07362.83YesNo099
14R:R:I396 R:R:Y397 72.68264.84YesYes699
15R:R:I156 R:R:Y397 96.7982.42NoYes089
16R:R:G157 R:R:I156 43.00011.76NoNo068
17R:R:A160 R:R:G157 33.23021.95NoNo096
18R:R:A160 R:R:N134 31.53834.69NoYes099
19R:R:I156 R:R:Y153 74.05624.84NoYes089
20R:R:L404 R:R:Y153 16.628810.55NoYes089
21R:R:R150 R:R:Y153 55.53533.09NoYes059
22R:R:P151 R:R:R150 54.11632.88NoNo055
23R:R:L159 R:R:N393 19.68536.87YesNo099
24R:R:L159 R:R:S206 27.88143YesNo098
25R:R:S158 R:R:S206 26.00754.89NoNo098
26R:R:F237 R:R:S158 24.11536.61YesNo089
27R:R:L159 R:R:L207 17.22914.15YesNo098
28R:R:F177 R:R:H178 11.34364.53NoNo044
29L:L:?1 R:R:Y275 26.72615.12YesYes107
30R:R:P251 R:R:Y275 21.422711.13NoYes167
31R:R:L190 R:R:P251 19.91276.57NoNo056
32R:R:F191 R:R:L190 18.00248.53NoNo055
33R:R:F191 R:R:N187 14.12726.04NoNo051
34R:R:N187 R:R:V188 12.16234.43NoNo015
35R:R:D184 R:R:V188 10.179213.15NoNo025
36R:R:I348 R:R:I396 12.894.42YesYes689
37R:R:I348 R:R:Y294 15.8014.84YesYes089
38R:R:P151 R:R:V228 52.65171.77NoNo056
39R:R:I227 R:R:V228 51.43273.07NoNo046
40R:R:A223 R:R:I227 49.95911.62YesNo054
41R:R:A223 R:R:R220 43.88252.77YesNo055
42R:R:H219 R:R:R220 40.73520.31NoNo065
43R:R:R214 R:R:Y397 15.55545.14NoYes099
44R:R:H219 R:R:Y296 35.50447.62NoNo864
45R:R:K300 R:R:Y296 34.458310.75NoNo054
46R:R:I218 R:R:K300 31.07435.82NoNo095
47L:L:?1 R:R:L276 13.6453.03YesNo105
48R:R:L276 R:R:M363 13.10835.65NoNo056
49R:R:L345 R:R:Y294 11.63477.03NoYes089
50R:R:A301 R:R:I218 26.09841.62NoNo089
51R:R:A301 R:R:M337 24.34281.61NoNo086
52R:R:A305 R:R:M337 19.18491.61NoNo056
53R:R:A305 R:R:D338 17.34744.63NoYes057
54R:R:I280 R:R:M363 11.2891.46NoNo056
55R:R:L207 R:R:Y397 17.12913.52NoYes089
56R:R:I348 R:R:Y397 10.1613.63YesYes689
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:S173 3.28 1 Yes Yes 0 4 0 1
L:L:?1 R:R:K192 10.79 1 Yes No 0 6 0 1
L:L:?1 R:R:L193 6.81 1 Yes No 0 4 0 1
L:L:?1 R:R:V196 7.33 1 Yes No 0 7 0 1
L:L:?1 R:R:T197 5.64 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F200 17.97 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F268 14.64 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y275 5.12 1 Yes Yes 0 7 0 1
L:L:?1 R:R:L276 3.03 1 Yes No 0 5 0 1
L:L:?1 R:R:W279 8.71 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W356 14.31 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L359 5.29 1 Yes No 0 7 0 1
L:L:?1 R:R:C386 8.67 1 Yes No 0 7 0 1
L:L:?1 R:R:N389 3.75 1 Yes Yes 0 9 0 1
R:R:F170 R:R:F200 3.22 1 No Yes 7 7 2 1
R:R:K192 R:R:S173 12.24 1 No Yes 6 4 1 1
R:R:F177 R:R:K192 2.48 0 No No 4 6 2 1
R:R:F200 R:R:V196 2.62 1 Yes No 7 7 1 1
R:R:T197 R:R:Y275 3.75 1 Yes Yes 6 7 1 1
R:R:T197 R:R:W279 7.28 1 Yes Yes 6 6 1 1
R:R:C386 R:R:F200 6.98 1 No Yes 7 7 1 1
R:R:T201 R:R:W279 2.43 0 No Yes 6 6 2 1
R:R:V204 R:R:W356 4.9 0 No Yes 7 8 2 1
R:R:I247 R:R:Y275 3.63 0 No Yes 5 7 2 1
R:R:L250 R:R:P251 9.85 1 No No 5 6 2 2
R:R:L250 R:R:Y275 9.38 1 No Yes 5 7 2 1
R:R:P251 R:R:Y275 11.13 1 No Yes 6 7 2 1
R:R:F268 R:R:I267 16.33 1 Yes Yes 5 4 1 2
R:R:F268 R:R:I271 3.77 1 Yes No 5 3 1 2
R:R:F268 R:R:L276 2.44 1 Yes No 5 5 1 1
R:R:I271 R:R:Y275 4.84 0 No Yes 3 7 2 1
R:R:D272 R:R:Y275 4.6 0 No Yes 5 7 2 1
R:R:L276 R:R:M363 5.65 1 No No 5 6 1 2
R:R:T283 R:R:W279 4.85 1 No Yes 8 6 2 1
R:R:L287 R:R:T283 2.95 1 No No 6 8 2 2
R:R:T283 R:R:W356 6.06 1 No Yes 8 8 2 1
R:R:L287 R:R:W356 12.53 1 No Yes 6 8 2 1
R:R:C355 R:R:N389 11.02 0 No Yes 8 9 2 1
R:R:N389 R:R:W356 3.39 1 Yes Yes 9 8 1 1
R:R:C382 R:R:L359 3.17 0 No No 5 7 2 1
R:R:N389 R:R:N393 6.81 1 Yes No 9 9 1 2
R:R:G194 R:R:T197 1.82 0 No Yes 6 6 2 1
L:L:?1 R:R:S383 1.64 1 Yes No 0 6 0 1
R:R:I169 R:R:S173 1.55 0 No Yes 5 4 2 1
L:L:?1 R:R:L360 1.51 1 Yes No 0 7 0 1
R:R:D176 R:R:S173 1.47 0 No Yes 3 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9B54_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.42
Number of Linked Nodes 245
Number of Links 259
Number of Hubs 25
Number of Links mediated by Hubs 106
Number of Communities 9
Number of Nodes involved in Communities 52
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 23131
Length Of Smallest Path 3
Average Path Length 12.194
Length of Longest Path 34
Minimum Path Strength 1.12
Average Path Strength 5.2426
Maximum Path Strength 17.325
Minimum Path Correlation 0.7
Average Path Correlation 0.922831
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 51.5168
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.3961
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1A
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1A
Name6-AMINO HEXANOIC ACID
Synonyms
Identifier
FormulaC33 H40 N4 O6
Molecular Weight588.694
SMILES
PubChem5327090
Formal Charge0
Total Atoms83
Total Chiral Atoms4
Total Bonds86
Total Aromatic Bonds18

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21554
Sequence
>9B54_nogp_Chain_R
FMVLNPSQQ LAIAVLSLT LGTFTVLEN LLVLCVIRC RPSYHFIGS 
LAVADLLGS VIFVYSFID FHVFHRKDS RNVFLFKLG GVTASFTAS 
VGSLFLTAI DRYISIHRP LAYKRIVTR PKAVVAFCL MWTIAIVIA 
VLPLLDIFP HIDETYLMF WIGVTSVLL LFIVYAYMY ILWKAHSHA 
VRMIQRGTA RMDIRLAKT LVLILVVLI ICWGPLLAI MVYDVFGKM 
NKLIKTVFA FCSMLCLLN STVNPIIYA LRSKDLRHA FRSM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7FEEALipidCannabinoidCB1Homo sapiensCP55940ZCZ011-2.72022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9ALipidCannabinoidCB1Homo sapiensCP55940ZCZ011Gi2/β1/γ23.362022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9 (No Gprot) ALipidCannabinoidCB1Homo sapiensCP55940ZCZ0113.362022-06-15doi.org/10.1038/s41589-022-01038-y
8IKHALipidCannabinoidCB1Homo sapiens-Q2LGi1/β1/γ13.32024-06-05doi.org/10.1073/pnas.2321532121
8IKH (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2L3.32024-06-05doi.org/10.1073/pnas.2321532121
8IKGALipidCannabinoidCB1Homo sapiens-Q2BGi1/β1/γ13.42024-06-05doi.org/10.1073/pnas.2321532121
8IKG (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2B3.42024-06-05doi.org/10.1073/pnas.2321532121
6KQIALipidCannabinoidCB1Homo sapiensCP55940Org27569-3.252019-10-23doi.org/10.1038/s41589-019-0387-2
8K8JALipidCannabinoidCB1Homo sapiensFenofibrate-chim(Gs-CtGq)/β1/γ22.882024-02-14doi.org/10.1002/advs.202306311
8K8J (No Gprot) ALipidCannabinoidCB1Homo sapiensFenofibrate-2.882024-02-14doi.org/10.1002/advs.202306311
5TGZALipidCannabinoidCB1Homo sapiensAM6538--2.82016-11-02doi.org/10.1016/j.cell.2016.10.004
6N4BALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-Gi1/β1/γ232019-01-30doi.org/10.1016/j.cell.2018.11.040
6N4B (No Gprot) ALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-32019-01-30doi.org/10.1016/j.cell.2018.11.040
6KPGALipidCannabinoidCB1Homo sapiensAM841-Gi1/β1/γ232020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPG (No Gprot) ALipidCannabinoidCB1Homo sapiensAM841-32020-02-12doi.org/10.1016/j.cell.2020.01.008
7V3ZALipidCannabinoidCB1Homo sapiensCP55940--3.292021-11-24doi.org/10.1021/jacs.1c06847
5U09ALipidCannabinoidCB1Homo sapiensTaranabant--2.62016-12-07doi.org/10.1038/nature20613
5XR8ALipidCannabinoidCB1Homo sapiensAM841--2.952017-07-12doi.org/10.1038/nature23272
5XRAALipidCannabinoidCB1Homo sapiensAM11542--2.82017-07-12doi.org/10.1038/nature23272
8GHVALipidCannabinoidCB1Homo sapiensAMG315-Gi1/β1/γ22.82023-05-24doi.org/10.1038/s41467-023-37864-4
8GHV (No Gprot) ALipidCannabinoidCB1Homo sapiensAMG315-2.82023-05-24doi.org/10.1038/s41467-023-37864-4
9B9ZALipidCannabinoidCB1Homo sapiensA1AKO--3.32024-11-20doi.org/10.1038/s41467-024-54206-0
9BA0ALipidCannabinoidCB1Homo sapiensA1AKN--3.132024-11-20doi.org/10.1038/s41467-024-54206-0
9B9YALipidCannabinoidCB1Homo sapiens7DY--3.52024-11-20doi.org/10.1038/s41467-024-54206-0
9B54ALipidCannabinoidCB1Homo sapiensA1AIW-Gi1/β1/γ22.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B54 (No Gprot) ALipidCannabinoidCB1Homo sapiensA1AIW-2.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B65ALipidCannabinoidCB1Homo sapiensKCA-Gi1/β1/γ23.032025-03-05doi.org/10.1038/s41586-025-08618-7
9B65 (No Gprot) ALipidCannabinoidCB1Homo sapiensKCA-3.032025-03-05doi.org/10.1038/s41586-025-08618-7
8WRZALipidCannabinoidCB1Homo sapiensPubChem 102336704-Arrestin23.62024-02-28doi.org/10.1093/procel/pwad055
9ERXALipidCannabinoidCB1Homo sapiensD9-THC analog-Gi1/β1/γ22.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
9ERX (No Gprot) ALipidCannabinoidCB1Homo sapiensD9-THC analog-2.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
8WU1ALipidCannabinoidCB1Homo sapiensPubChem 119025665-Arrestin23.22024-03-20doi.org/10.1016/j.cell.2023.11.017
9DGIALipidCannabinoidCB1Homo sapiensZ8526711350--3.352025-04-30doi.org/10.1038/s41467-025-57136-7
9EGOALipidCannabinoidCB1Homo sapiensYVF-Gi1/β1/γ23.22025-04-30doi.org/10.1038/s41467-025-57136-7
9EGO (No Gprot) ALipidCannabinoidCB1Homo sapiensYVF-3.22025-04-30doi.org/10.1038/s41467-025-57136-7
8GAGALipidCannabinoidCB1Homo sapiensPubChem 170838490-Gi1/β1/γ23.32024-02-28To be published
8GAG (No Gprot) ALipidCannabinoidCB1Homo sapiensPubChem 170838490-3.32024-02-28To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9B54_nogp.zip



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