Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 5.196251610
2R:R:I119 3.0275415
3R:R:V140 2.6275408
4R:R:L147 5.915429
5R:R:R150 4.485425
6R:R:Y153 5.08429729
7R:R:F155 3.742508
8R:R:L159 5.27449
9R:R:D163 6.236549
10R:R:F174 5.82415
11R:R:F177 6.584514
12R:R:K192 2.435406
13R:R:T197 4.5416
14R:R:F208 5.562507
15R:R:W241 5.286559
16R:R:I267 5.91667614
17R:R:F268 4.21286715
18R:R:W279 4.81716
19R:R:I280 4.8425415
20R:R:Y294 4.376569
21R:R:Y296 7.474534
22R:R:I297 2.0425469
23R:R:L345 2.675468
24R:R:W356 4.1475478
25R:R:M363 4.672516
26R:R:M371 4.272511
27R:R:F379 5.31833614
28R:R:T391 4.4575407
29R:R:N393 6.48449
30R:R:L404 3.386528
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F177 22.2676.76YesYes104
2R:R:F177 R:R:F189 16.74412.14YesNo049
3R:R:F189 R:R:P269 15.76237.22NoNo093
4L:L:?1 R:R:K376 13.00083.35YesNo002
5L:L:?1 R:R:F174 12.82552.9YesYes105
6R:R:F174 R:R:I119 13.14543.77YesYes155
7L:L:?1 R:R:S173 16.11732.38YesNo004
8R:R:K192 R:R:S173 15.1884.59YesNo064
9L:L:?1 R:R:F200 78.75435.79YesNo007
10R:R:C386 R:R:F200 78.75435.59NoNo077
11R:R:C386 R:R:W356 78.71485.22NoYes078
12R:R:N389 R:R:W356 1003.39NoYes098
13R:R:N389 R:R:N393 98.606112.26NoYes099
14R:R:D163 R:R:N393 32.15134.04YesYes499
15R:R:D163 R:R:N134 39.44514.04YesNo099
16R:R:N134 R:R:P394 27.41746.52NoNo099
17R:R:E133 R:R:P394 25.87457.86NoNo089
18R:R:E133 R:R:T391 24.32285.64NoYes087
19R:R:T130 R:R:T391 16.43299.42NoYes077
20R:R:S167 R:R:T130 13.21567.99NoNo077
21R:R:A160 R:R:N134 11.59384.69NoNo099
22R:R:L207 R:R:N393 70.91262.75NoYes489
23R:R:L207 R:R:Y397 82.47134.69NoNo089
24R:R:R214 R:R:Y397 76.91776.17NoNo099
25R:R:R214 R:R:T210 51.29753.88NoNo099
26R:R:F155 R:R:T210 50.30243.89YesNo089
27R:R:D213 R:R:F155 44.20092.39NoYes098
28R:R:D213 R:R:S152 39.94041.47NoNo098
29R:R:S152 R:R:Y153 23.27525.09NoYes289
30R:R:L404 R:R:Y153 16.45923.52YesYes289
31R:R:L404 R:R:V140 11.49292.98YesYes088
32R:R:R150 R:R:S152 15.59135.27YesNo258
33R:R:P151 R:R:R150 15.22755.76NoYes055
34R:R:P151 R:R:R230 11.3222.88NoNo051
35R:R:L159 R:R:N393 14.17116.87YesYes499
36R:R:L159 R:R:S206 18.12056.01YesNo098
37R:R:S158 R:R:S206 16.9944.89NoNo098
38R:R:S158 R:R:W241 14.95573.71NoYes599
39R:R:H270 R:R:P269 12.44416.1NoNo033
40L:L:?1 R:R:T197 20.5058.18YesYes106
41R:R:T197 R:R:Y275 21.08793.75YesNo067
42R:R:P251 R:R:Y275 16.01218.34NoNo067
43R:R:L190 R:R:P251 12.7296.57NoNo056
44R:R:G194 R:R:T197 10.93633.64NoYes066
45R:R:M240 R:R:W241 12.40472.33NoYes069
46R:R:G205 R:R:M240 11.45355.24NoNo056
47R:R:F208 R:R:G205 10.54621.51YesNo075
48R:R:R214 R:R:Y294 35.39935.14NoYes099
49R:R:I297 R:R:Y294 25.85252.42YesYes699
50R:R:I218 R:R:I297 11.53681.47NoYes099
51R:R:I218 R:R:K300 10.13857.27NoNo095
52L:L:?1 R:R:I267 18.33526.79YesYes104
53R:R:T283 R:R:W279 21.670910.92NoYes086
54R:R:L287 R:R:T283 21.79362.95NoNo068
55R:R:I297 R:R:L341 14.06591.43YesNo098
56R:R:A301 R:R:L341 12.96571.58NoNo088
57R:R:A301 R:R:D338 11.56751.54NoNo087
58R:R:F379 R:R:I362 27.25968.79YesNo044
59R:R:C382 R:R:I362 21.82433.27NoNo054
60R:R:C382 R:R:P358 16.38031.88NoNo059
61R:R:T197 R:R:W279 12.47042.43YesYes166
62R:R:L287 R:R:W356 21.33784.56NoYes768
63R:R:L159 R:R:L207 12.38272.77YesNo498
64R:R:D163 R:R:L159 11.65515.43YesYes499
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F170 5.79 1 Yes No 0 7 0 1
L:L:?1 R:R:S173 2.38 1 Yes No 0 4 0 1
L:L:?1 R:R:F174 2.9 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F177 6.76 1 Yes Yes 0 4 0 1
L:L:?1 R:R:H178 11.21 1 Yes No 0 4 0 1
L:L:?1 R:R:L193 4.39 1 Yes No 0 4 0 1
L:L:?1 R:R:T197 8.18 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F200 5.79 1 Yes No 0 7 0 1
L:L:?1 R:R:I267 6.79 1 Yes Yes 0 4 0 1
L:L:?1 R:R:F268 7.72 1 Yes Yes 0 5 0 1
L:L:?1 R:R:W279 6.32 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L359 2.19 1 Yes No 0 7 0 1
L:L:?1 R:R:M363 3.36 1 Yes Yes 0 6 0 1
L:L:?1 R:R:K376 3.35 1 Yes No 0 2 0 1
L:L:?1 R:R:S383 4.76 1 Yes No 0 6 0 1
R:R:I105 R:R:M109 2.92 1 No No 3 3 2 2
R:R:F177 R:R:I105 5.02 1 Yes No 4 3 1 2
R:R:F177 R:R:M109 9.95 1 Yes No 4 3 1 2
R:R:K376 R:R:V110 12.14 0 No No 2 3 1 2
R:R:F174 R:R:I119 3.77 1 Yes Yes 5 5 1 2
R:R:F170 R:R:F174 6.43 1 No Yes 7 5 1 1
R:R:F170 R:R:S383 2.64 1 No No 7 6 1 1
R:R:K192 R:R:S173 4.59 0 Yes No 6 4 2 1
R:R:F174 R:R:H178 10.18 1 Yes No 5 4 1 1
R:R:F177 R:R:H178 9.05 1 Yes No 4 4 1 1
R:R:F177 R:R:F189 2.14 1 Yes No 4 9 1 2
R:R:F268 R:R:L193 4.87 1 Yes No 5 4 1 1
R:R:I271 R:R:L193 2.85 1 No No 3 4 2 1
R:R:G194 R:R:T197 3.64 0 No Yes 6 6 2 1
R:R:F200 R:R:V196 2.62 0 No No 7 7 1 2
R:R:T197 R:R:Y275 3.75 1 Yes No 6 7 1 2
R:R:T197 R:R:W279 2.43 1 Yes Yes 6 6 1 1
R:R:C386 R:R:F200 5.59 0 No No 7 7 2 1
R:R:T201 R:R:W279 2.43 0 No Yes 6 6 2 1
R:R:I267 R:R:S265 3.1 1 Yes No 4 4 1 2
R:R:F268 R:R:S265 2.64 1 Yes No 5 4 1 2
R:R:I271 R:R:S265 3.1 1 No No 3 4 2 2
R:R:F268 R:R:I267 5.02 1 Yes Yes 5 4 1 1
R:R:D366 R:R:I267 11.2 1 No Yes 4 4 2 1
R:R:I267 R:R:M371 4.37 1 Yes Yes 4 1 1 2
R:R:F379 R:R:I267 5.02 1 Yes Yes 4 4 2 1
R:R:F268 R:R:I271 2.51 1 Yes No 5 3 1 2
R:R:F268 R:R:L276 2.44 1 Yes No 5 5 1 2
R:R:F268 R:R:F379 4.29 1 Yes Yes 5 4 1 2
R:R:I280 R:R:L276 4.28 1 Yes No 5 5 2 2
R:R:I280 R:R:W279 3.52 1 Yes Yes 5 6 2 1
R:R:T283 R:R:W279 10.92 0 No Yes 8 6 2 1
R:R:L360 R:R:W279 4.56 1 No Yes 7 6 2 1
R:R:M363 R:R:W279 3.49 1 Yes Yes 6 6 1 1
R:R:I280 R:R:L360 4.28 1 Yes No 5 7 2 2
R:R:I280 R:R:M363 7.29 1 Yes Yes 5 6 2 1
R:R:L359 R:R:M363 4.24 1 No Yes 7 6 1 1
R:R:F379 R:R:L359 4.87 1 Yes No 4 7 2 1
R:R:F379 R:R:M363 4.98 1 Yes Yes 4 6 2 1
R:R:D366 R:R:M371 2.77 1 No Yes 4 1 2 2
R:R:K376 R:R:M371 5.76 0 No Yes 2 1 1 2
R:R:F379 R:R:S383 3.96 1 Yes No 4 6 2 1
L:L:?1 R:R:A380 1.25 1 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8GHV_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.14
Number of Linked Nodes 247
Number of Links 285
Number of Hubs 30
Number of Links mediated by Hubs 128
Number of Communities 7
Number of Nodes involved in Communities 55
Number of Links involved in Communities 84
Path Summary
Number Of Nodes in MetaPath 65
Number Of Links MetaPath 64
Number of Shortest Paths 42786
Length Of Smallest Path 3
Average Path Length 13.8465
Length of Longest Path 32
Minimum Path Strength 1.155
Average Path Strength 4.93812
Maximum Path Strength 12.1833
Minimum Path Correlation 0.7
Average Path Correlation 0.919963
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 45.6874
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.4624
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeZI5
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeZI5
Name(5Z,8Z,11Z,13S,14Z)-N-[(2R)-1-hydroxypropan-2-yl]-13-methylicosa-5,8,11,14-tetraenamide
Synonyms
Identifier
FormulaC24 H41 N O2
Molecular Weight375.588
SMILES
PubChem145964903
Formal Charge0
Total Atoms68
Total Chiral Atoms2
Total Bonds67
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21554
Sequence
>8GHV_nogp_Chain_R
DIECFMVLN PSQQLAIAV LSLTLGTFT VLENLLVLC VILHSRSLR 
CRPSYHFIG SLAVADLLG SVIFVYSFI DFHVFHRKD SRNVFLFKL 
GGVTASFTA SVGSLFLTA IDRYISIHR PLAYKRIVT RPKAVVAFC 
LMWTIAIVI AVLPLLGWN CEKLQSVCS DIFPHIDET YLMFWIGVT 
SVLLLFIVY AYMYILWKA HSHAVRMDI RLAKTLVLI LVVLIICWG 
PLLAIMVYD VFGKMNKLI KTVFAFCSM LCLLNSTVN PIIYALRSK 
DLRHAFRSM F


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7FEEALipidCannabinoidCB1Homo sapiensCP55940ZCZ011-2.72022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9ALipidCannabinoidCB1Homo sapiensCP55940ZCZ011Gi2/β1/γ23.362022-06-15doi.org/10.1038/s41589-022-01038-y
7WV9 (No Gprot) ALipidCannabinoidCB1Homo sapiensCP55940ZCZ0113.362022-06-15doi.org/10.1038/s41589-022-01038-y
8IKHALipidCannabinoidCB1Homo sapiens-Q2LGi1/β1/γ13.32024-06-05doi.org/10.1073/pnas.2321532121
8IKH (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2L3.32024-06-05doi.org/10.1073/pnas.2321532121
8IKGALipidCannabinoidCB1Homo sapiens-Q2BGi1/β1/γ13.42024-06-05doi.org/10.1073/pnas.2321532121
8IKG (No Gprot) ALipidCannabinoidCB1Homo sapiens-Q2B3.42024-06-05doi.org/10.1073/pnas.2321532121
6KQIALipidCannabinoidCB1Homo sapiensCP55940Org27569-3.252019-10-23doi.org/10.1038/s41589-019-0387-2
8K8JALipidCannabinoidCB1Homo sapiensFenofibrate-chim(Gs-CtGq)/β1/γ22.882024-02-14doi.org/10.1002/advs.202306311
8K8J (No Gprot) ALipidCannabinoidCB1Homo sapiensFenofibrate-2.882024-02-14doi.org/10.1002/advs.202306311
5TGZALipidCannabinoidCB1Homo sapiensAM6538--2.82016-11-02doi.org/10.1016/j.cell.2016.10.004
6N4BALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-Gi1/β1/γ232019-01-30doi.org/10.1016/j.cell.2018.11.040
6N4B (No Gprot) ALipidCannabinoidCB1Homo sapiensMDMB-Fubinaca-32019-01-30doi.org/10.1016/j.cell.2018.11.040
6KPGALipidCannabinoidCB1Homo sapiensAM841-Gi1/β1/γ232020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPG (No Gprot) ALipidCannabinoidCB1Homo sapiensAM841-32020-02-12doi.org/10.1016/j.cell.2020.01.008
7V3ZALipidCannabinoidCB1Homo sapiensCP55940--3.292021-11-24doi.org/10.1021/jacs.1c06847
5U09ALipidCannabinoidCB1Homo sapiensTaranabant--2.62016-12-07doi.org/10.1038/nature20613
5XR8ALipidCannabinoidCB1Homo sapiensAM841--2.952017-07-12doi.org/10.1038/nature23272
5XRAALipidCannabinoidCB1Homo sapiensAM11542--2.82017-07-12doi.org/10.1038/nature23272
8GHVALipidCannabinoidCB1Homo sapiensAMG315-Gi1/β1/γ22.82023-05-24doi.org/10.1038/s41467-023-37864-4
8GHV (No Gprot) ALipidCannabinoidCB1Homo sapiensAMG315-2.82023-05-24doi.org/10.1038/s41467-023-37864-4
9B9ZALipidCannabinoidCB1Homo sapiensA1AKO--3.32024-11-20doi.org/10.1038/s41467-024-54206-0
9BA0ALipidCannabinoidCB1Homo sapiensA1AKN--3.132024-11-20doi.org/10.1038/s41467-024-54206-0
9B9YALipidCannabinoidCB1Homo sapiens7DY--3.52024-11-20doi.org/10.1038/s41467-024-54206-0
9B54ALipidCannabinoidCB1Homo sapiensA1AIW-Gi1/β1/γ22.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B54 (No Gprot) ALipidCannabinoidCB1Homo sapiensA1AIW-2.862025-03-05doi.org/10.1038/s41586-025-08618-7
9B65ALipidCannabinoidCB1Homo sapiensKCA-Gi1/β1/γ23.032025-03-05doi.org/10.1038/s41586-025-08618-7
9B65 (No Gprot) ALipidCannabinoidCB1Homo sapiensKCA-3.032025-03-05doi.org/10.1038/s41586-025-08618-7
8WRZALipidCannabinoidCB1Homo sapiensPubChem 102336704-Arrestin23.62024-02-28doi.org/10.1093/procel/pwad055
9ERXALipidCannabinoidCB1Homo sapiensD9-THC analog-Gi1/β1/γ22.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
9ERX (No Gprot) ALipidCannabinoidCB1Homo sapiensD9-THC analog-2.92024-06-26doi.org/10.21203/rs.3.rs-4277209/v1
8WU1ALipidCannabinoidCB1Homo sapiensPubChem 119025665-Arrestin23.22024-03-20doi.org/10.1016/j.cell.2023.11.017
9DGIALipidCannabinoidCB1Homo sapiensZ8526711350--3.352025-04-30doi.org/10.1038/s41467-025-57136-7
9EGOALipidCannabinoidCB1Homo sapiensYVF-Gi1/β1/γ23.22025-04-30doi.org/10.1038/s41467-025-57136-7
9EGO (No Gprot) ALipidCannabinoidCB1Homo sapiensYVF-3.22025-04-30doi.org/10.1038/s41467-025-57136-7
8GAGALipidCannabinoidCB1Homo sapiensPubChem 170838490-Gi1/β1/γ23.32024-02-28To be published
8GAG (No Gprot) ALipidCannabinoidCB1Homo sapiensPubChem 170838490-3.32024-02-28To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8GHV_nogp.zip



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