Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.824291410
2R:R:V72 1.6325405
3R:R:M90 6.5625437
4R:R:N95 4.3075437
5R:R:I96 4.752505
6R:R:Y97 5.66857747
7R:R:L101 7.63429
8R:R:D105 6.685629
9R:R:M112 9.2675417
10R:R:Y119 9.44504
11R:R:W124 5.81714718
12R:R:L135 3.76417
13R:R:Y140 6.37555
14R:R:F143 3.68667606
15R:R:M151 4.122546
16R:R:Y157 6.664507
17R:R:I194 4.175404
18R:R:T199 6.09404
19R:R:F231 7.02415
20R:R:F235 6.535418
21R:R:W287 8.36833618
22R:R:H291 7.6125418
23R:R:I294 8.3975415
24R:R:Y312 5.91414
25R:R:I316 4.445415
26R:R:Y320 11.685416
27R:R:N322 5.6475409
28R:R:P327 7.37429
29R:R:Y330 10.32409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y320 33.693711.27YesYes106
2R:R:M112 R:R:Y320 33.030423.95YesYes176
3R:R:M112 R:R:Y66 28.49374.79YesNo076
4R:R:Y313 R:R:Y66 23.79123.97NoNo046
5R:R:Y119 R:R:Y313 19.579521.84YesNo044
6L:L:?1 R:R:W287 70.17316.57YesYes108
7R:R:N322 R:R:W287 34.363614.69YesYes098
8R:R:C286 R:R:N322 30.22484.72NoYes089
9R:R:C286 R:R:T321 27.39933.38NoNo085
10R:R:T321 R:R:V69 25.96674.76NoNo057
11R:R:S324 R:R:V69 24.52083.23NoNo077
12R:R:G73 R:R:S324 21.58923.71NoNo087
13R:R:G73 R:R:V72 20.10351.84NoYes085
14R:R:I146 R:R:W287 98.83275.87NoYes178
15R:R:I146 R:R:P238 1003.39NoNo079
16R:R:P238 R:R:T150 99.45613.5NoNo097
17R:R:I242 R:R:T150 98.85927.6NoNo087
18R:R:I242 R:R:S153 98.54086.19NoNo089
19R:R:S153 R:R:Y246 39.09276.36NoNo098
20R:R:R156 R:R:Y246 29.88668.23NoNo098
21R:R:R156 R:R:Y330 29.117210.29NoYes099
22R:R:M152 R:R:Y330 23.77138.38NoYes089
23R:R:L101 R:R:M152 23.27394.24YesNo098
24R:R:D105 R:R:L101 14.08119.5YesYes299
25R:R:C245 R:R:S153 62.4663.44NoNo079
26R:R:C245 R:R:V154 51.34973.42NoNo076
27R:R:M151 R:R:V154 50.55386.09YesNo066
28R:R:M151 R:R:Y97 46.36865.99YesYes467
29R:R:A175 R:R:Y97 22.50454NoYes077
30R:R:A175 R:R:I96 21.17133.25NoYes075
31R:R:I96 R:R:M90 28.34128.75YesYes057
32R:R:N179 R:R:Y97 23.95048.14NoYes077
33R:R:I96 R:R:N179 21.28414.25YesNo057
34R:R:M90 R:R:N95 16.78724.21YesYes377
35L:L:?1 R:R:M142 10.14797.25YesNo107
36R:R:F143 R:R:M142 25.47593.73YesNo067
37R:R:F143 R:R:S186 27.77082.64YesNo068
38R:R:S186 R:R:T144 25.5296.4NoNo087
39L:L:?1 R:R:V230 14.58513.82YesNo005
40R:R:F143 R:R:V230 10.69183.93YesNo065
41R:R:T144 R:R:Y140 21.00557.49NoYes075
42L:L:?1 R:R:L135 46.06354.43YesYes107
43R:R:C210 R:R:L135 33.20293.17NoYes197
44R:R:C210 R:R:W124 19.101913.06NoYes198
45R:R:C131 R:R:C210 12.88727.28NoNo199
46R:R:C131 R:R:T199 11.8793.38NoYes094
47R:R:A193 R:R:L135 14.73771.58NoYes057
48R:R:A193 R:R:S136 10.85761.71NoNo055
49R:R:C245 R:R:Y157 23.34026.72NoYes077
50R:R:C161 R:R:Y157 13.54389.41NoYes077
51R:R:C161 R:R:R252 12.10452.79NoNo075
52L:L:?1 R:R:I294 15.586714.63YesYes105
53R:R:I294 R:R:K227 14.8775.82YesNo054
54L:L:?1 R:R:H291 11.54744.94YesYes108
55R:R:F231 R:R:H291 12.2049.05YesYes158
56R:R:F235 R:R:H291 16.44239.05YesYes188
57R:R:V276 R:R:Y246 18.571310.09NoNo088
58R:R:I250 R:R:V276 17.35766.14NoNo058
59R:R:I250 R:R:T273 15.91837.6NoNo056
60R:R:K254 R:R:T273 13.03311.5NoNo046
61R:R:K254 R:R:L269 11.63365.64NoNo046
62R:R:L325 R:R:V72 10.91071.49NoYes065
63R:R:H291 R:R:W287 18.55817.41YesYes188
64R:R:M142 R:R:W287 16.70094.65NoYes178
65R:R:M152 R:R:Y97 11.79285.99NoYes087
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Q115 16.2 1 Yes No 0 7 0 1
L:L:?1 R:R:L135 4.43 1 Yes Yes 0 7 0 1
L:L:?1 R:R:D138 21.74 1 Yes No 0 6 0 1
L:L:?1 R:R:Y139 18.03 1 Yes No 0 5 0 1
L:L:?1 R:R:M142 7.25 1 Yes No 0 7 0 1
L:L:?1 R:R:V230 3.82 1 Yes No 0 5 0 1
L:L:?1 R:R:W287 6.57 1 Yes Yes 0 8 0 1
L:L:?1 R:R:I290 4.57 1 Yes No 0 6 0 1
L:L:?1 R:R:H291 4.94 1 Yes Yes 0 8 0 1
L:L:?1 R:R:I294 14.63 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y312 4.51 1 Yes Yes 0 4 0 1
L:L:?1 R:R:I316 3.66 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y320 11.27 1 Yes Yes 0 6 0 1
R:R:D138 R:R:T111 7.23 0 No No 6 7 1 2
R:R:M112 R:R:Y320 23.95 1 Yes Yes 7 6 2 1
R:R:I316 R:R:Q115 6.86 1 Yes No 5 7 1 1
R:R:Q115 R:R:Y320 7.89 1 No Yes 7 6 1 1
R:R:L135 R:R:Y139 5.86 1 Yes No 7 5 1 1
R:R:C210 R:R:L135 3.17 1 No Yes 9 7 2 1
R:R:F143 R:R:M142 3.73 0 Yes No 6 7 2 1
R:R:M142 R:R:W287 4.65 1 No Yes 7 8 1 1
R:R:F143 R:R:V230 3.93 0 Yes No 6 5 2 1
R:R:F283 R:R:I146 5.02 1 No No 9 7 2 2
R:R:I146 R:R:W287 5.87 1 No Yes 7 8 2 1
R:R:I294 R:R:K227 5.82 1 Yes No 5 4 1 2
R:R:F231 R:R:F235 5.36 1 Yes Yes 5 8 2 2
R:R:F231 R:R:H291 9.05 1 Yes Yes 5 8 2 1
R:R:F235 R:R:H291 9.05 1 Yes Yes 8 8 2 1
R:R:F283 R:R:W287 11.02 1 No Yes 9 8 2 1
R:R:H291 R:R:W287 7.41 1 Yes Yes 8 8 1 1
R:R:N322 R:R:W287 14.69 0 Yes Yes 9 8 2 1
R:R:I290 R:R:I294 5.89 1 No Yes 6 5 1 1
R:R:C315 R:R:I290 3.27 0 No No 7 6 2 1
R:R:F293 R:R:Y312 8.25 0 No Yes 5 4 2 1
R:R:I294 R:R:Y312 7.25 1 Yes Yes 5 4 1 1
R:R:I316 R:R:Y312 3.63 1 Yes Yes 5 4 1 1
R:R:I316 R:R:Y320 3.63 1 Yes Yes 5 6 1 1
R:R:M226 R:R:V230 3.04 0 No No 5 5 2 1
L:L:?1 R:R:S211 1.92 1 Yes No 0 4 0 1
R:R:A193 R:R:L135 1.58 0 No Yes 5 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9V6O_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 239
Number of Links 264
Number of Hubs 29
Number of Links mediated by Hubs 122
Number of Communities 6
Number of Nodes involved in Communities 43
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 31394
Length Of Smallest Path 3
Average Path Length 13.0405
Length of Longest Path 28
Minimum Path Strength 1.215
Average Path Strength 6.03869
Maximum Path Strength 18.9867
Minimum Path Correlation 0.7
Average Path Correlation 0.918914
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 48.1378
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.9155
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeIVB
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeIVB
NameNalfurafine
Synonyms~{N}-[(4~{R},4~{a}~{S},7~{R},7~{a}~{R},12~{b}~{S})-3-(cyclopropylmethyl)-4~{a},9-bis(oxidanyl)-1,2,4,5,6,7,7~{a},13-octahydro-4,12-methanobenzofuro[3,2-e]isoquinolin-7-yl]-3-(furan-3-yl)-~{N}-methyl-propanamide
Identifier
FormulaC28 H32 N2 O5
Molecular Weight476.564
SMILES
PubChem6445230
Formal Charge0
Total Atoms67
Total Chiral Atoms5
Total Bonds73
Total Aromatic Bonds11

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41145
Sequence
>9V6O_nogp_Chain_R
AIPVIITAV YSVVFVVGL VGNSLVMFV IIRYTKMKT ATNIYIFNL 
ALADALVTT TMPFQSTVY LMNSWPFGD VLCKIVSID YYNMFTSIF 
TLTMMSVDR YIAVCHPVK ALDFRTPLK AKIINICIW LLSSSVGIS 
AIVLGGTKV IECSLQFWW DLFMKICVF IFAFVIPVL IIIVCYTLM 
ILRLKSVRL LSGSREKDR NLRRITRLV LVVVAVFVV CWTPIHIFI 
LVEALGLSS YYFCIALGY TNSSLNPIL YAFLDENFK RCL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4DJHAPeptideOpioidκHomo sapiensJDTic--2.92012-03-21doi.org/10.1038/nature10939
6B73APeptideOpioidκHomo sapiensMP1104--3.12018-01-17doi.org/10.1016/j.cell.2017.12.011
6VI4APeptideOpioidκHomo sapiensJDTic--3.32020-03-18doi.org/10.1038/s41467-020-14889-7
8F7WAPeptideOpioidκHomo sapiensDynorphin-Gi1/β1/γ23.192022-12-14doi.org/10.1016/j.cell.2022.12.026
8F7W (No Gprot) APeptideOpioidκHomo sapiensDynorphin-3.192022-12-14doi.org/10.1016/j.cell.2022.12.026
7YITAPeptideOpioidκHomo sapiensNalfurafine--3.32023-04-12doi.org/10.1038/s41467-023-37041-7
8DZPAPeptideOpioidκHomo sapiensmomSalB-Gi1/β1/γ22.712023-05-03doi.org/10.1038/s41586-023-06030-7
8DZP (No Gprot) APeptideOpioidκHomo sapiensmomSalB-2.712023-05-03doi.org/10.1038/s41586-023-06030-7
8DZQAPeptideOpioidκHomo sapiensmomSalB-Go/β1/γ22.822023-05-03doi.org/10.1038/s41586-023-06030-7
8DZQ (No Gprot) APeptideOpioidκHomo sapiensmomSalB-2.822023-05-03doi.org/10.1038/s41586-023-06030-7
8DZRAPeptideOpioidκHomo sapiensGR89,696-chim(NtGi2-Gt3)/β1/γ22.612023-05-03doi.org/10.1038/s41586-023-06030-7
8DZR (No Gprot) APeptideOpioidκHomo sapiensGR89,696-2.612023-05-03doi.org/10.1038/s41586-023-06030-7
8DZSAPeptideOpioidκHomo sapiensGR89,696-chim(NtGi2-Gz)/β1/γ22.652023-05-03doi.org/10.1038/s41586-023-06030-7
8DZS (No Gprot) APeptideOpioidκHomo sapiensGR89,696-2.652023-05-03doi.org/10.1038/s41586-023-06030-7
7Y1FAPeptideOpioidκHomo sapiensDynorphin-Gi1/β1/γ23.32023-05-24doi.org/10.1093/procel/pwac033
7Y1F (No Gprot) APeptideOpioidκHomo sapiensDynorphin-3.32023-05-24doi.org/10.1093/procel/pwac033
9MQKAPeptideOpioidκHomo sapiensIsoquinuclidine--3.182025-02-12doi.org/10.1101/2025.01.09.632033
9MQLAPeptideOpioidκHomo sapiensIsoquinuclidine--2.962025-02-12doi.org/10.1101/2025.01.09.632033
8FEGAPeptideOpioidκHomo sapiens(DNCP)-β-Naloxamine-Gi1/β1/γ22.542023-12-06doi.org/10.1038/s41467-023-43718-w
8FEG (No Gprot) APeptideOpioidκHomo sapiens(DNCP)-β-Naloxamine-2.542023-12-06doi.org/10.1038/s41467-023-43718-w
8VVEAPeptideOpioidκHomo sapiensnorBNI-Gi1/β1/γ23.32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVE (No Gprot) APeptideOpioidκHomo sapiensnorBNI-3.32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVFAPeptideOpioidκHomo sapiensJDTic-Gi1/β1/γ232025-01-15doi.org/10.1038/s41589-024-01812-0
8VVF (No Gprot) APeptideOpioidκHomo sapiensJDTic-32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVGAPeptideOpioidκHomo sapiensGB18-Gi1/β1/γ23.32025-01-15doi.org/10.1038/s41589-024-01812-0
8VVG (No Gprot) APeptideOpioidκHomo sapiensGB18-3.32025-01-15doi.org/10.1038/s41589-024-01812-0
9D61APeptideOpioidκHomo sapiensJDTic-Gi1/β1/γ23.582025-01-15doi.org/10.1038/s41589-024-01812-0
9D61 (No Gprot) APeptideOpioidκHomo sapiensJDTic-3.582025-01-15doi.org/10.1038/s41589-024-01812-0
9V6OAPeptideOpioidκHomo sapiensNalfurafine-Gi1/β1/γ22.762025-11-1910.1038/s41467-025-64882-1
9V6O (No Gprot) APeptideOpioidκHomo sapiensNalfurafine-2.762025-11-1910.1038/s41467-025-64882-1
9W49APeptideOpioidκHomo sapiensU-50488H-Gi1/β1/γ22.92025-11-1910.1038/s41467-025-64882-1
9W49 (No Gprot) APeptideOpioidκHomo sapiensU-50488H-2.92025-11-1910.1038/s41467-025-64882-1
9L60APeptideOpioidκHomo sapiensDynorphinMPAM-15Gi1/β1/γ22.92025-12-31To be published
9L60 (No Gprot) APeptideOpioidκHomo sapiensDynorphinMPAM-152.92025-12-31To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9V6O_nogp.zip



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