Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.715410
2L:L:?2 11.8225810
3L:L:?3 20.0775410
4L:L:?4 9.79333610
5L:L:?5 14.06810
6L:L:?6 13.7987810
7L:L:?7 13.1775410
8R:R:N61 5.7275409
9R:R:L74 4.426528
10R:R:T77 5.062527
11R:R:Y81 6.182508
12R:R:M85 4.365409
13R:R:I92 4.02417
14R:R:F93 3.978516
15R:R:M96 5.13407
16R:R:W109 6.585447
17R:R:F119 4.7875404
18R:R:Q120 9.87414
19R:R:F121 5.088506
20R:R:E124 7.13333614
21R:R:Y142 8.66408
22R:R:W168 5.955409
23R:R:L228 7.1525438
24R:R:L231 6.51407
25R:R:Y232 7.396539
26R:R:F272 7.91409
27R:R:W276 9.2425408
28R:R:H280 8.945407
29R:R:R283 12.5175416
30R:R:F286 6.5775414
31R:R:Q302 4.7125413
32R:R:N305 8.37414
33R:R:F309 10.59415
34R:R:L311 3.0375407
35R:R:F312 4.775417
36R:R:Y313 6.942517
37R:R:Y330 8.5925408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?2 L:L:?6 19.66089.58YesYes100
2L:L:?4 L:L:?6 13.55819.58YesYes100
3L:L:?2 R:R:F309 20.90969.67YesYes105
4L:L:?4 R:R:F309 16.48838.7YesYes105
5L:L:?5 L:L:?6 20.430928.64YesYes100
6L:L:?5 R:R:R283 42.511527.79YesYes106
7L:L:?6 R:R:Q120 62.77822.05YesYes104
8L:L:?6 R:R:I178 11.66614.98YesNo104
9R:R:F119 R:R:Q120 95.61624.68YesYes044
10R:R:C116 R:R:F119 79.65854.19NoYes094
11R:R:C116 R:R:W109 74.88545.22NoYes497
12R:R:R102 R:R:W109 19.758911NoYes057
13R:R:R102 R:R:V101 17.5185.23NoNo054
14R:R:P108 R:R:V101 15.03193.53NoNo044
15R:R:P108 R:R:Q105 10.04534.74NoNo044
16R:R:F309 R:R:Y313 45.796414.44YesYes157
17R:R:M96 R:R:Y313 10.43468.38YesYes077
18R:R:F312 R:R:Y313 26.11544.13YesYes177
19R:R:F312 R:R:W276 37.626.01YesYes078
20R:R:F272 R:R:W276 10014.03YesYes098
21R:R:F272 R:R:I134 61.62436.28YesNo098
22R:R:I134 R:R:M85 60.60624.37NoYes089
23R:R:L82 R:R:M85 13.62734.24NoYes089
24R:R:L82 R:R:Y323 12.43335.86NoNo089
25R:R:V268 R:R:Y323 19.88295.05NoNo089
26R:R:L322 R:R:V268 17.45744.47NoNo088
27R:R:I318 R:R:L322 10.01074.28NoNo078
28R:R:F272 R:R:L228 53.02976.09YesYes098
29R:R:L228 R:R:Y232 16.482610.55YesYes389
30R:R:R141 R:R:Y232 12.24019.26NoYes099
31R:R:R141 R:R:Y323 11.30274.12NoNo099
32R:R:F93 R:R:Y313 32.26144.13YesYes167
33R:R:F93 R:R:N61 37.06343.62YesYes069
34R:R:N61 R:R:P320 16.95276.52YesNo099
35R:R:A86 R:R:N61 13.52644.69NoYes099
36R:R:A86 R:R:T64 11.83343.36NoNo099
37R:R:N324 R:R:T64 20.26652.92NoNo079
38R:R:N324 R:R:Y330 17.209423.26NoYes078
39R:R:P320 R:R:T64 11.87383.5NoNo099
40R:R:F121 R:R:I178 18.87062.51YesNo064
41R:R:F121 R:R:F172 13.13137.5YesNo064
42R:R:F172 R:R:W168 10.79518.02NoYes049
43R:R:L137 R:R:M85 53.64692.83NoYes089
44R:R:L137 R:R:Y81 52.41839.38NoYes088
45R:R:E140 R:R:Y81 19.833911.22NoYes098
46R:R:E140 R:R:T77 18.634112.7NoYes097
47R:R:T76 R:R:T77 29.54754.71NoYes277
48R:R:N79 R:R:T76 26.87114.39NoNo287
49R:R:L74 R:R:N79 15.92889.61YesNo288
50R:R:V160 R:R:Y81 25.24733.79NoYes078
51R:R:T77 R:R:V160 18.79273.17YesNo077
52R:R:C126 R:R:I92 11.30564.91NoYes087
53R:R:V184 R:R:W109 54.11134.9NoYes057
54R:R:D113 R:R:V184 29.86478.76NoNo045
55R:R:D113 R:R:G183 22.47575.03NoNo044
56L:L:?6 R:R:E124 25.61076.93YesYes104
57R:R:E124 R:R:Y128 11.24514.49YesNo046
58R:R:R283 R:R:S217 13.60427.91YesNo066
59R:R:E124 R:R:R283 45.66675.82YesYes146
60R:R:L228 R:R:S138 33.24786.01YesNo389
61R:R:L231 R:R:S138 33.4416.01YesNo079
62R:R:L231 R:R:Y142 28.549614.07YesYes078
63R:R:C146 R:R:Y142 21.03949.41NoYes078
64R:R:C146 R:R:K238 14.61943.23NoNo075
65R:R:I145 R:R:K238 13.31874.36NoNo095
66R:R:I145 R:R:I235 12.015111.77NoNo098
67R:R:N196 R:R:V184 22.47285.91NoNo045
68R:R:H186 R:R:N196 20.00127.65NoNo024
69R:R:H186 R:R:P192 10.04533.05NoNo021
70R:R:G183 R:R:T201 20.00121.82NoNo043
71R:R:A204 R:R:T201 17.52081.68NoNo043
72R:R:A204 R:R:L209 15.03484.73NoNo044
73R:R:H280 R:R:S217 19.93196.97YesNo076
74R:R:H280 R:R:S218 30.35792.79YesNo074
75R:R:S218 R:R:W215 24.88972.47NoNo044
76R:R:V214 R:R:W215 16.64419.81NoNo054
77R:R:F279 R:R:R283 78.17328.55NoYes066
78R:R:F279 R:R:H280 19.65227.92NoYes067
79R:R:V214 R:R:Y284 11.11823.79NoNo055
80R:R:F221 R:R:H280 10.526918.1NoYes087
81R:R:F272 R:R:V225 10.63655.24YesNo096
82L:L:?5 L:L:?7 18.1155.81YesYes100
83R:R:F279 R:R:W276 75.848612.03NoYes068
84R:R:F221 R:R:V225 11.63445.24NoNo086
85L:L:?7 R:R:Q120 37.17889.88YesYes104
86L:L:?7 R:R:E124 20.081913.12YesYes104
87R:R:F312 R:R:I92 12.32083.77YesYes177
88R:R:F93 R:R:I92 15.57123.77YesYes167
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y106 10.1 1 Yes No 0 3 0 1
L:L:?1 R:R:R199 5.23 1 Yes No 0 3 0 1
L:L:?1 R:R:Q302 3.44 1 Yes Yes 0 3 0 1
L:L:?2 R:R:D99 5.39 1 Yes No 0 6 0 1
L:L:?2 R:R:L103 8.79 1 Yes No 0 4 0 1
L:L:?2 R:R:Q302 11.62 1 Yes Yes 0 3 0 1
L:L:?2 R:R:N305 3.27 1 Yes Yes 0 4 0 1
L:L:?2 R:R:F309 9.67 1 Yes Yes 0 5 0 1
L:L:?3 R:R:F286 9.91 1 Yes Yes 0 4 0 1
L:L:?3 R:R:N305 22.35 1 Yes Yes 0 4 0 1
L:L:?4 R:R:F286 3.87 1 Yes Yes 0 4 0 1
L:L:?4 R:R:S308 4.77 1 Yes No 0 7 0 1
L:L:?4 R:R:F309 8.7 1 Yes Yes 0 5 0 1
L:L:?5 R:R:E124 5.61 1 Yes Yes 0 4 0 1
L:L:?5 R:R:L181 11.73 1 Yes No 0 4 0 1
L:L:?5 R:R:P200 6.96 1 Yes No 0 4 0 1
L:L:?5 R:R:M213 11.98 1 Yes No 0 5 0 1
L:L:?5 R:R:R283 27.79 1 Yes Yes 0 6 0 1
L:L:?6 R:R:D99 4.73 1 Yes No 0 6 0 1
L:L:?6 R:R:Q120 22.05 1 Yes Yes 0 4 0 1
L:L:?6 R:R:E124 6.93 1 Yes Yes 0 4 0 1
L:L:?6 R:R:I178 4.98 1 Yes No 0 4 0 1
L:L:?7 R:R:Q120 9.88 1 Yes Yes 0 4 0 1
L:L:?7 R:R:E124 13.12 1 Yes Yes 0 4 0 1
R:R:D99 R:R:F309 9.55 1 No Yes 6 5 1 1
R:R:E197 R:R:Y106 8.98 0 No No 4 3 2 1
R:R:F119 R:R:Q120 4.68 0 Yes Yes 4 4 2 1
R:R:E124 R:R:Y128 4.49 1 Yes No 4 6 1 2
R:R:E124 R:R:I178 6.83 1 Yes No 4 4 1 1
R:R:E124 R:R:R283 5.82 1 Yes Yes 4 6 1 1
R:R:S217 R:R:Y128 5.09 0 No No 6 6 2 2
R:R:L181 R:R:M213 7.07 1 No No 4 5 1 1
R:R:E185 R:R:R199 20.93 0 No No 1 3 2 1
R:R:E197 R:R:R199 5.82 0 No No 4 3 2 1
R:R:R283 R:R:S217 7.91 1 Yes No 6 6 1 2
R:R:P278 R:R:S308 3.56 0 No No 9 7 2 1
R:R:F279 R:R:R283 8.55 0 No Yes 6 6 2 1
R:R:G282 R:R:N305 3.39 0 No Yes 4 4 2 1
R:R:F286 R:R:S289 3.96 1 Yes No 4 2 1 2
R:R:F286 R:R:F290 8.57 1 Yes No 4 1 1 2
R:R:N305 R:R:S301 4.47 1 Yes No 4 4 1 2
R:R:F309 R:R:Y313 14.44 1 Yes Yes 5 7 1 2
R:R:Q120 R:R:V182 2.87 1 Yes No 4 4 1 2
R:R:L306 R:R:Q302 2.66 0 No Yes 4 3 2 1
R:R:F121 R:R:I178 2.51 0 Yes No 6 4 2 1
R:R:Q302 R:R:Y303 1.13 1 Yes No 3 1 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7F9Z_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.09
Number of Linked Nodes 261
Number of Links 290
Number of Hubs 37
Number of Links mediated by Hubs 133
Number of Communities 5
Number of Nodes involved in Communities 38
Number of Links involved in Communities 56
Path Summary
Number Of Nodes in MetaPath 89
Number Of Links MetaPath 88
Number of Shortest Paths 78805
Length Of Smallest Path 3
Average Path Length 14.3436
Length of Longest Path 31
Minimum Path Strength 1.425
Average Path Strength 7.36297
Maximum Path Strength 28.215
Minimum Path Correlation 0.7
Average Path Correlation 0.919486
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 43.1287
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.3192
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeDHI
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeDHI
NameD-HISTIDINE
Synonyms
Identifier
FormulaC6 H10 N3 O2
Molecular Weight156.162
SMILES
PubChem5288059
Formal Charge1
Total Atoms21
Total Chiral Atoms1
Total Bonds21
Total Aromatic Bonds5

CodeDTR
PDB ResiduesL:L:?2 L:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
  • DTR
  • D-Tryptophan
  • (R)-tryptophan
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem6923517
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

CodeDAL
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeDAL
NameD-Alanine
SynonymsD-Ala
Identifier
FormulaC3 H7 N O2
Molecular Weight89.093
SMILES
PubChem71080
Formal Charge0
Total Atoms13
Total Chiral Atoms1
Total Bonds12
Total Aromatic Bonds0

CodeDPN
PDB ResiduesL:L:?5
Environment DetailsOpen EMBL-EBI Page
CodeDPN
NameD-Phenylalanine
SynonymsD-Phenylalanine
Identifier
FormulaC9 H11 N O2
Molecular Weight165.189
SMILES
PubChem6919011
Formal Charge0
Total Atoms23
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds6

CodeDLY
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
CodeDLY
NameD-Lysine
Synonyms
  • D-Lysine
  • (R)-2,6-diaminohexanoic acid
  • D-Lysin
  • D-2,6-Diaminohexanoic acid
Identifier
FormulaC6 H14 N2 O2
Molecular Weight146.188
SMILES
PubChem57449
Formal Charge0
Total Atoms24
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?7
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ92847
Sequence
>7F9Z_nogp_Chain_R
PAPLLAGVT ATCVALFVV GIAGNLLTM LVVSRFREL RTTTNLYLS 
SMAFSDLLI FLCMPLDLV RLWQYRPWN FGDLLCKLF QFVSESCTY 
ATVLTITAL SVERYFAIC FPLRAKVVV TKGRVKLVI FVIWAVAFC 
SAGPIFVLV GVEHENGTD PWDTNECRP TEFAVRSGL LTVMVWVSS 
IFFFLPVFC LTVLYSLIG RKLWRNHKQ TVKMLAVVV FAFILCWLP 
FHVGRYLFS KSFEPGSLE IAQISQYCN LVSFVLFYL SAAINPILY 
NIMSKKYRV AVF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8JSRAPeptideGhrelinGhrelinHomo sapiensAnamorelin-chim(NtGi1-Gs-CtGq)/β1/γ22.92025-01-22doi.org/10.1038/s41594-024-01481-6
8JSR (No Gprot) APeptideGhrelinGhrelinHomo sapiensAnamorelin-2.92025-01-22doi.org/10.1038/s41594-024-01481-6
7F83APeptideGhrelinGhrelinHomo sapiensPF-05190457--2.942022-01-1910.1038/s41467-022-27975-9
7W2ZAPeptideGhrelinGhrelinHomo sapiensGhrelin-Go/β1/γ22.82022-01-1910.1038/s41467-022-27975-9
7W2Z (No Gprot) APeptideGhrelinGhrelinHomo sapiensGhrelin-2.82022-01-1910.1038/s41467-022-27975-9
7NA8APeptideGhrelinGhrelinHomo sapiensPubChem 178024-Gi1/β1/γ22.72021-12-1510.1038/s41467-021-26735-5
7NA8 (No Gprot) APeptideGhrelinGhrelinHomo sapiensPubChem 178024-2.72021-12-1510.1038/s41467-021-26735-5
7NA7APeptideGhrelinGhrelinHomo sapiensGhrelin-27-Gi1/β1/γ22.72021-12-1510.1038/s41467-021-26735-5
7NA7 (No Gprot) APeptideGhrelinGhrelinHomo sapiensGhrelin-27-2.72021-12-1510.1038/s41467-021-26735-5
7F9ZAPeptideGhrelinGhrelinHomo sapiensGHRP-6-chim(NtGi1-Gs-CtGq)/β1/γ23.22021-08-1810.1038/s41467-021-25364-2
7F9Z (No Gprot) APeptideGhrelinGhrelinHomo sapiensGHRP-6-3.22021-08-1810.1038/s41467-021-25364-2
7F9YAPeptideGhrelinGhrelinHomo sapiensGhrelin-28-chim(NtGi1-Gs-CtGq)/β1/γ22.92021-08-1810.1038/s41467-021-25364-2
7F9Y (No Gprot) APeptideGhrelinGhrelinHomo sapiensGhrelin-28-2.92021-08-1810.1038/s41467-021-25364-2
6KO5APeptideGhrelinGhrelinHomo sapiensPubChem 57400002--3.32020-08-1210.1038/s41467-020-17554-1




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7F9Z_nogp.zip



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