Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.7357710
2R:R:M22 5.7125417
3R:R:R49 6.8275447
4R:R:F53 6.0725408
5R:R:D61 6.1325409
6R:R:F62 6.6475408
7R:R:V64 4.46408
8R:R:S68 7.2825418
9R:R:I69 4.026518
10R:R:Y72 7.908517
11R:R:I73 5.0325406
12R:R:L77 4.206506
13R:R:W80 7.086539
14R:R:F82 8.115406
15R:R:W90 4.45571717
16R:R:D94 7.6225418
17R:R:Y95 10.485418
18R:R:T99 5.61408
19R:R:D111 7.3375449
20R:R:Y122 5.8625448
21R:R:N147 5.528518
22R:R:E163 6.4625434
23R:R:C164 5.0575439
24R:R:F168 8.316526
25R:R:F169 8.90667626
26R:R:I174 6.7725428
27R:R:L175 5.208527
28R:R:E182 7.094508
29R:R:F183 6.9725409
30R:R:F193 9.2425407
31R:R:I197 5.27479
32R:R:L201 2.736578
33R:R:F312 4.475409
34R:R:W316 12.2675409
35R:R:Y319 7.54427
36R:R:F344 7.8725416
37R:R:W345 11.3418
38R:R:W348 9.11429718
39R:R:F352 4.44556
40R:R:Y358 4.8375409
41R:R:R364 8.122567
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F344 18.917611.36YesYes106
2R:R:F344 R:R:Y72 15.4373.09YesYes167
3R:R:T76 R:R:Y72 34.893416.23NoYes057
4R:R:L77 R:R:T76 11.87372.95YesNo065
5L:L:?1 R:R:W348 71.48983.19YesYes108
6R:R:W348 R:R:Y72 23.873212.54YesYes187
7R:R:W345 R:R:W348 13.73414.99YesYes188
8R:R:F349 R:R:W345 11.354515.03NoYes048
9R:R:F349 R:R:F352 10.61123.22NoYes046
10R:R:M22 R:R:Y72 12.29454.79YesYes177
11R:R:I73 R:R:M22 22.57935.83YesYes067
12L:L:?1 R:R:D94 43.290310.13YesYes108
13R:R:D94 R:R:S68 39.998410.31YesYes188
14R:R:S68 R:R:V64 1006.46YesYes088
15R:R:L97 R:R:V64 86.87964.47NoYes068
16R:R:F63 R:R:L97 49.7093.65NoNo066
17R:R:F62 R:R:F63 40.29344.29YesNo086
18R:R:S68 R:R:W348 52.03348.65YesYes188
19R:R:F62 R:R:M30 41.084.98YesNo086
20R:R:F27 R:R:M30 39.77032.49NoNo056
21R:R:F27 R:R:L31 38.46462.44NoNo054
22R:R:L31 R:R:L35 35.84522.77NoNo048
23R:R:S351 R:R:V64 11.18153.23NoYes098
24R:R:F365 R:R:L35 34.51592.44NoNo088
25R:R:F365 R:R:P359 14.44198.67NoNo088
26R:R:P359 R:R:Y358 13.06542.78NoYes089
27R:R:F63 R:R:I59 10.14322.51NoNo066
28R:R:A39 R:R:F365 19.22835.55NoNo088
29R:R:A39 R:R:R364 17.69454.15NoYes087
30R:R:L97 R:R:S60 41.41823NoNo069
31R:R:A100 R:R:S60 41.24123.42NoNo089
32R:R:A100 R:R:W140 39.75852.59NoNo089
33R:R:N56 R:R:W140 38.35845.65NoNo099
34R:R:N104 R:R:N56 32.726310.9NoNo089
35R:R:N104 R:R:V139 31.31054.43NoNo088
36R:R:L107 R:R:V139 29.89854.47NoNo088
37R:R:F53 R:R:L107 27.03534.87YesNo088
38R:R:F53 R:R:I132 10.52073.77YesNo087
39R:R:D111 R:R:F53 13.608113.14YesYes098
40R:R:I73 R:R:P74 15.62183.39YesNo065
41R:R:F82 R:R:P74 12.58957.22YesNo065
42R:R:H75 R:R:T76 21.80056.85NoNo065
43R:R:H75 R:R:W80 12.79798.46NoYes369
44L:L:?1 R:R:Q347 50.884919.87YesNo008
45R:R:Q347 R:R:Y319 49.614612.4NoYes087
46R:R:F169 R:R:Y319 23.79855.16YesYes267
47R:R:F168 R:R:F169 14.64649.65YesYes266
48L:L:?1 R:R:Y95 10.099913.12YesYes108
49L:L:?1 R:R:N147 16.86075.12YesYes108
50L:L:?1 R:R:E182 89.577612.36YesYes008
51R:R:E182 R:R:F312 74.74633.5YesYes089
52R:R:F312 R:R:V102 62.09793.93YesNo098
53R:R:P186 R:R:V102 60.91013.53NoNo098
54R:R:P186 R:R:V106 54.85333.53NoNo097
55R:R:S109 R:R:V106 53.61833.23NoNo097
56R:R:S109 R:R:V190 34.26026.46NoNo099
57R:R:F193 R:R:S109 20.72295.28YesNo079
58R:R:N194 R:R:V190 32.89944.43NoNo099
59R:R:L305 R:R:N194 30.29972.75NoNo089
60R:R:L301 R:R:L305 28.91922.77NoNo088
61R:R:L301 R:R:R112 27.511213.36NoNo089
62R:R:F193 R:R:Y113 10.512917.54YesNo079
63R:R:I197 R:R:R112 23.5351.25YesNo099
64R:R:I197 R:R:L201 19.21262.85YesYes798
65R:R:Y319 R:R:Y340 19.54699.93YesNo275
66R:R:E165 R:R:Y340 19.19692.24NoNo045
67R:R:E165 R:R:P335 15.00833.14NoNo044
68R:R:E182 R:R:W316 12.404615.27YesYes089
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D94 10.13 1 Yes Yes 0 8 0 1
L:L:?1 R:R:Y95 13.12 1 Yes Yes 0 8 0 1
L:L:?1 R:R:N147 5.12 1 Yes Yes 0 8 0 1
L:L:?1 R:R:E182 12.36 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F344 11.36 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q347 19.87 1 Yes No 0 8 0 1
L:L:?1 R:R:W348 3.19 1 Yes Yes 0 8 0 1
R:R:S68 R:R:W90 3.71 1 Yes Yes 8 7 2 2
R:R:D94 R:R:S68 10.31 1 Yes Yes 8 8 1 2
R:R:S68 R:R:W348 8.65 1 Yes Yes 8 8 2 1
R:R:I69 R:R:W345 5.87 1 Yes Yes 8 8 2 2
R:R:I69 R:R:W348 4.7 1 Yes Yes 8 8 2 1
R:R:W90 R:R:Y72 2.89 1 Yes Yes 7 7 2 2
R:R:F344 R:R:Y72 3.09 1 Yes Yes 6 7 1 2
R:R:W348 R:R:Y72 12.54 1 Yes Yes 8 7 1 2
R:R:D94 R:R:W90 3.35 1 Yes Yes 8 7 1 2
R:R:F344 R:R:W90 4.01 1 Yes Yes 6 7 1 2
R:R:T92 R:R:Y95 13.73 0 No Yes 6 8 2 1
R:R:D94 R:R:W348 6.7 1 Yes Yes 8 8 1 1
R:R:N147 R:R:Y95 9.3 1 Yes Yes 8 8 1 1
R:R:G148 R:R:Y95 5.79 1 No Yes 5 8 2 1
R:R:N147 R:R:T99 5.85 1 Yes Yes 8 8 1 2
R:R:E182 R:R:T99 2.82 0 Yes Yes 8 8 1 2
R:R:N147 R:R:V146 5.91 1 Yes No 8 7 1 2
R:R:E182 R:R:F312 3.5 0 Yes Yes 8 9 1 2
R:R:E182 R:R:W316 15.27 0 Yes Yes 8 9 1 2
R:R:Q347 R:R:Y319 12.4 0 No Yes 8 7 1 2
R:R:F344 R:R:W348 13.03 1 Yes Yes 6 8 1 1
R:R:W345 R:R:W348 14.99 1 Yes Yes 8 8 2 1
R:R:C98 R:R:E182 1.52 0 No Yes 8 8 2 1
R:R:N147 R:R:T178 1.46 1 Yes No 8 8 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JG1_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.73
Number of Linked Nodes 254
Number of Links 286
Number of Hubs 41
Number of Links mediated by Hubs 140
Number of Communities 7
Number of Nodes involved in Communities 43
Number of Links involved in Communities 63
Path Summary
Number Of Nodes in MetaPath 69
Number Of Links MetaPath 68
Number of Shortest Paths 54203
Length Of Smallest Path 3
Average Path Length 14.4831
Length of Longest Path 36
Minimum Path Strength 1.4
Average Path Strength 6.45824
Maximum Path Strength 17.67
Minimum Path Correlation 0.7
Average Path Correlation 0.923102
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 48.7954
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.2912
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • neurotransmitter receptor activity   • molecular transducer activity   • signaling receptor activity   • G protein-coupled amine receptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • histamine receptor activity   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • cellular response to stimulus   • cellular response to nitrogen compound   • regulation of cellular process   • response to stimulus   • signaling   • cell communication   • synaptic signaling
Gene OntologyBiological Process• electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • cellular response to stimulus   • cellular response to nitrogen compound   • regulation of cellular process   • response to stimulus   • signaling   • cell communication   • synaptic signaling   • signal transduction   • cellular response to acetylcholine   • regulation of biological process   • response to oxygen-containing compound   • cell-cell signaling   • response to nitrogen compound   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • cellular response to oxygen-containing compound   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • cellular response to chemical stimulus   • G protein-coupled acetylcholine receptor signaling pathway   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to acetylcholine   • G protein-coupled receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway   • trans-synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • regulation of signaling   • regulation of signal transduction   • regulation of MAPK cascade   • intracellular signal transduction   • regulation of intracellular signal transduction   • regulation of response to stimulus   • intracellular signaling cassette   • MAPK cascade   • regulation of cell communication   • defense response   • response to stress   • inflammatory response   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • cellular anatomical structure   • periplasmic space   • synapse   • cell junction   • cell periphery   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection
Gene OntologyCellular Component
SCOP2Domain Identifier• Cytochromes
SCOP2Family Identifier• Cytochromes
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9H3N8
Sequence
>9JG1_nogp_Chain_R
SLSTRVTLA FFMSLVAFA IMLGNALVI LAFVVDKNL RHRSSYFFL 
NLAISDFFV GVISIPLYI PHTLFEWDF GKEICVFWL TTDYLLCTA 
SVYNIVLIS YDRYLSVSN AVSYRTQHT GVLKIVTLM VAVWVLAFL 
VNGPMILVS ESWKDEGSE CEPGFFSEW YILAITSFL EFVIPVILV 
AYFNMNIYW SLWKRDHLQ REHVELLRA RRLAKSLAI LLGVFAVCW 
APYSLFTIV LSFYSSATG PKSVWYRIA FWLQWFNSF VNPLLYPLC 
HKRFQKA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6WH4AAmine5-Hydroxytryptamine5-HT2AHomo sapiensMethiothepin--3.42020-09-23doi.org/10.1016/j.cell.2020.08.024
8H4IALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs)/β1/γ23.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4I (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4KALipidFree Fatty AcidFFA4Homo sapiensGW9508-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4K (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensGW9508-3.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4LALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs-CtGq)/β1/γ23.072023-06-21doi.org/10.1038/s41422-023-00835-x
8H4L (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.072023-06-21doi.org/10.1038/s41422-023-00835-x
8KH4AOrphanOrphanGPR161Homo sapiens--Gs/β1/γ23.12023-10-11doi.org/10.1038/s41467-023-41654-3
8KH4 (No Gprot) AOrphanOrphanGPR161Homo sapiens--3.12023-10-11doi.org/10.1038/s41467-023-41654-3
7YFCAAmineHistamineH4Homo sapiensHistamine-chim(NtGi1-Gs-CtGq)/β1/γ232023-10-25doi.org/10.1038/s41467-023-42260-z
7YFC (No Gprot) AAmineHistamineH4Homo sapiensHistamine-32023-10-25doi.org/10.1038/s41467-023-42260-z
7YFDAAmineHistamineH4Homo sapiensImetit-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-10-25doi.org/10.1038/s41467-023-42260-z
7YFD (No Gprot) AAmineHistamineH4Homo sapiensImetit-3.12023-10-25doi.org/10.1038/s41467-023-42260-z
8HN8AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ232023-12-20To be published
8HN8 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-32023-12-20To be published
8HOCAAmineHistamineH4Homo sapiensImetit-Gi1/β1/γ232023-12-20To be published
8HOC (No Gprot) AAmineHistamineH4Homo sapiensImetit-32023-12-20To be published
8TH4APeptideAngiotensinAT1Homo sapiensLosartanAT118-L Nanobody-3.32024-05-22doi.org/10.1038/s41589-024-01620-6
8YN9AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.32024-10-09doi.org/10.1038/s41467-024-52585-y
8YN9 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.32024-10-09doi.org/10.1038/s41467-024-52585-y
8YNAAAmineHistamineH4Homo sapiensImmepip-Gi1/β1/γ22.632024-10-16doi.org/10.2210/pdb8YN7/pdb
8YNA (No Gprot) AAmineHistamineH4Homo sapiensImmepip-2.632024-10-16doi.org/10.2210/pdb8YN7/pdb
9JEDAAmineHistamineH4Homo sapiensHistaminePO4Gi1/β1/γ22.582025-09-10doi.org/10.1038/s41401-025-01633-4
9JED (No Gprot) AAmineHistamineH4Homo sapiensHistaminePO42.582025-09-10doi.org/10.1038/s41401-025-01633-4
9L42AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.92025-10-22doi.org/10.3390/ph18030292
9L42 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.92025-10-22doi.org/10.3390/ph18030292
8JXTAAmineHistamineH4Homo sapiensHistaminePO4Gi1/β1/γ23.072024-03-20doi.org/10.1038/s41467-024-46840-5
8JXT (No Gprot) AAmineHistamineH4Homo sapiensHistaminePO43.072024-03-20doi.org/10.1038/s41467-024-46840-5
8JXVAAmineHistamineH4Homo sapiensClozapine-Gi1/β1/γ23.212024-03-20doi.org/10.1038/s41467-024-46840-5
8JXV (No Gprot) AAmineHistamineH4Homo sapiensClozapine-3.212024-03-20doi.org/10.1038/s41467-024-46840-5
8JXWAAmineHistamineH4Homo sapiensVUF6884-Gi1/β1/γ23.012024-03-20doi.org/10.1038/s41467-024-46840-5
8JXW (No Gprot) AAmineHistamineH4Homo sapiensVUF6884-3.012024-03-20doi.org/10.1038/s41467-024-46840-5
8JXXAAmineHistamineH4Homo sapiensClobenpropit-Gi1/β1/γ23.062024-03-20doi.org/10.1038/s41467-024-46840-5
8JXX (No Gprot) AAmineHistamineH4Homo sapiensClobenpropit-3.062024-03-20doi.org/10.1038/s41467-024-46840-5
9LRCAAmineHistamineH4Homo sapiensHistamine--2.842025-06-11doi.org/10.1038/s42003-025-08363-7
9LREAAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.842025-06-11doi.org/10.1038/s42003-025-08363-7
9LRE (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.842025-06-11doi.org/10.1038/s42003-025-08363-7
9JG1AAmineHistamineH4Homo sapiensAdriforant--3.622025-12-0310.1038/s41401-025-01633-4
9JG1 (No Gprot) AAmineHistamineH4Homo sapiensAdriforant-3.622025-12-0310.1038/s41401-025-01633-4




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JG1_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.