Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:D43 7.595407
2R:R:L46 6.81479
3R:R:Y52 5.098566
4R:R:F54 5.71508
5R:R:D61 6.696509
6R:R:F63 5.1075406
7R:R:Y72 8.82517
8R:R:L77 4.818556
9R:R:F82 6.3425406
10R:R:Y95 9.976518
11R:R:T99 5.2725418
12R:R:V102 5.6375418
13R:R:Y103 4.494507
14R:R:N104 7.06408
15R:R:Y113 8.905439
16R:R:T127 6.2925428
17R:R:W140 7.6825409
18R:R:N147 8.016518
19R:R:I151 4407
20R:R:F169 7.584516
21R:R:E182 8.455418
22R:R:F183 5.21419
23R:R:V190 3.8675409
24R:R:F193 6.68537
25R:R:Y198 4.815407
26R:R:E294 9.5225445
27R:R:F312 5.8875419
28R:R:W316 8.27619
29R:R:Y319 8.46717
30R:R:T323 5.02517
31R:R:Y340 6.596515
32R:R:F344 14.36416
33R:R:W345 7.58418
34R:R:Q347 14.4275418
35R:R:W348 10.2114718
36R:R:Y358 7.7375489
37R:R:F365 6.4725478
38L:L:?1 14.0463810
39W:W:?1 9.66143710
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L18 R:R:L77 26.74736.92NoYes056
2R:R:L18 R:R:T17 17.86882.95NoNo053
3R:R:L77 R:R:M22 15.02264.24YesNo067
4R:R:M22 R:R:W345 20.31189.31NoYes078
5R:R:W348 R:R:Y72 27.83538.68YesYes187
6R:R:T76 R:R:Y72 36.679813.73NoYes057
7R:R:L77 R:R:T76 33.66854.42YesNo065
8R:R:W345 R:R:W348 27.757512.18YesYes188
9R:R:M30 R:R:V66 10.80673.04NoNo065
10R:R:F62 R:R:V66 12.57475.24NoNo085
11R:R:F62 R:R:F63 16.08144.29NoYes086
12R:R:F63 R:R:L97 24.67826.09YesNo066
13R:R:L97 R:R:V64 26.36844.47NoNo068
14R:R:V64 R:R:W348 66.85123.68NoYes088
15R:R:I29 R:R:S351 12.0894.64NoNo089
16R:R:S351 R:R:V64 51.07584.85NoNo098
17R:R:D61 R:R:S351 45.7048.83YesNo099
18R:R:D61 R:R:N354 46.01495.39YesNo099
19R:R:I105 R:R:N354 41.13855.66NoNo099
20R:R:I105 R:R:Y358 39.89519.67NoYes099
21R:R:I108 R:R:Y358 29.65184.84NoYes899
22R:R:F54 R:R:I108 28.41816.28YesNo089
23R:R:M136 R:R:Y52 28.81153.59NoYes086
24R:R:M136 R:R:N56 30.074312.62NoNo089
25R:R:N104 R:R:N56 33.017612.26YesNo089
26R:R:L57 R:R:N104 29.56924.12NoYes098
27R:R:D61 R:R:L57 29.66154.07YesNo099
28R:R:F365 R:R:F54 18.66536.43YesYes088
29R:R:R49 R:R:T127 11.81710.35NoYes278
30R:R:I132 R:R:T127 16.39714.56NoYes078
31R:R:I132 R:R:Y52 17.67937.25NoYes076
32R:R:W90 R:R:Y72 24.68799.65NoYes077
33R:R:F344 R:R:Y72 36.05817.22YesYes167
34R:R:F82 R:R:W90 18.73334.01YesNo067
35R:R:I151 R:R:Y95 19.06363.63YesYes078
36L:L:?1 R:R:Y95 27.004716.55YesYes108
37L:L:?1 R:R:F344 18.922730.95YesYes106
38L:L:?1 R:R:W348 77.7610.72YesYes108
39R:R:N147 R:R:Y95 20.22449.3YesYes188
40R:R:P166 R:R:Y95 28.37445.56NoYes078
41L:L:?1 W:W:?1 33.964710.49YesYes100
42R:R:F344 R:R:Y319 28.78728.25YesYes167
43R:R:Y319 W:W:?1 22.23038.09YesYes170
44R:R:T99 R:R:Y103 14.4986.24YesYes087
45R:R:N147 R:R:V146 11.23427.39YesNo087
46R:R:V146 R:R:Y103 10.52996.31NoYes077
47L:L:?1 R:R:Q347 30.530917.54YesYes108
48R:R:Q347 R:R:W316 47.049419.71YesYes189
49R:R:V102 R:R:W316 92.64667.36YesYes189
50R:R:V102 R:R:Y103 29.79263.79YesYes087
51R:R:Q347 R:R:Y319 17.009111.27YesYes187
52R:R:W316 W:W:?1 57.90969.17YesYes190
53R:R:N104 R:R:V139 41.58057.39YesNo088
54R:R:V139 R:R:Y103 43.88273.79NoYes087
55R:R:P186 R:R:V102 1003.53NoYes098
56R:R:I185 R:R:P186 98.23695.08NoNo069
57R:R:I185 R:R:L189 95.11882.85NoNo067
58R:R:F193 R:R:L189 93.3463.65YesNo077
59R:R:F193 R:R:S109 64.43253.96YesNo079
60R:R:S109 R:R:V190 62.54314.85NoYes099
61R:R:F193 R:R:Y113 17.907611.35YesYes379
62R:R:F193 R:R:Y192 11.19045.16YesNo375
63R:R:F168 R:R:P166 15.828810.11NoNo067
64R:R:E165 R:R:F169 22.45375.83NoYes046
65R:R:F169 R:R:T323 17.07225.19YesYes167
66R:R:T323 R:R:Y319 28.88448.74YesYes177
67R:R:E165 R:R:T333 11.253611.29NoNo046
68R:R:F168 R:R:I174 12.73986.28NoNo068
69R:R:E171 R:R:I174 11.18072.73NoNo068
70R:R:N194 R:R:V190 51.52754.43NoYes099
71R:R:L305 R:R:N194 49.66739.61NoNo089
72R:R:N196 R:R:W199 13.51695.65NoNo064
73R:R:L301 R:R:L305 43.44072.77NoNo088
74R:R:L201 R:R:L301 33.03714.15NoNo088
75R:R:L201 R:R:R204 15.52777.29NoNo488
76R:R:L201 R:R:R297 15.52778.5NoNo487
77R:R:E294 R:R:R204 13.337216.28YesNo458
78R:R:E294 R:R:R297 13.34219.3YesNo457
79R:R:E294 R:R:H292 17.829911.08YesNo055
80R:R:H292 R:R:L295 13.385814.14NoNo054
81R:R:Y319 R:R:Y340 13.35188.94YesYes175
82R:R:F344 R:R:W348 10.588211.02YesYes168
83R:R:F169 R:R:P166 13.915213YesNo067
84L:L:?1 R:R:Y319 12.02589.93YesYes107
85R:R:Y95 W:W:?1 12.545514.84YesYes180
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:V64 R:R:W348 3.68 0 No Yes 8 8 2 1
R:R:D94 R:R:S68 7.36 1 No No 8 8 1 2
R:R:I69 R:R:W348 12.92 0 No Yes 8 8 2 1
R:R:F344 R:R:Y72 7.22 1 Yes Yes 6 7 1 2
R:R:W345 R:R:Y72 4.82 1 Yes Yes 8 7 2 2
R:R:W348 R:R:Y72 8.68 1 Yes Yes 8 7 1 2
R:R:D94 R:R:W348 12.28 1 No Yes 8 8 1 1
L:L:?1 R:R:D94 10.22 1 Yes No 0 8 0 1
R:R:N147 R:R:Y95 9.3 1 Yes Yes 8 8 2 1
R:R:I151 R:R:Y95 3.63 0 Yes Yes 7 8 2 1
R:R:P166 R:R:Y95 5.56 0 No Yes 7 8 2 1
L:L:?1 R:R:Y95 16.55 1 Yes Yes 0 8 0 1
R:R:Y95 W:W:?1 14.84 1 Yes Yes 8 0 1 1
L:L:?1 R:R:C98 5.97 1 Yes No 0 8 0 1
R:R:E182 R:R:N147 13.15 1 Yes Yes 8 8 2 2
R:R:E182 R:R:W316 4.36 1 Yes Yes 8 9 2 2
R:R:E182 W:W:?1 10.67 1 Yes Yes 8 0 2 1
R:R:Q347 R:R:W316 19.71 1 Yes Yes 8 9 1 2
R:R:W316 W:W:?1 9.17 1 Yes Yes 9 0 2 1
R:R:T323 R:R:Y319 8.74 1 Yes Yes 7 7 2 1
R:R:Y319 R:R:Y340 8.94 1 Yes Yes 7 5 1 2
R:R:A343 R:R:Y319 4 0 No Yes 5 7 2 1
R:R:F344 R:R:Y319 8.25 1 Yes Yes 6 7 1 1
R:R:Q347 R:R:Y319 11.27 1 Yes Yes 8 7 1 1
L:L:?1 R:R:Y319 9.93 1 Yes Yes 0 7 0 1
R:R:Y319 W:W:?1 8.09 1 Yes Yes 7 0 1 1
R:R:S320 W:W:?1 5.18 0 No Yes 8 0 2 1
R:R:T323 R:R:Y340 3.75 1 Yes Yes 7 5 2 2
R:R:F344 R:R:W348 11.02 1 Yes Yes 6 8 1 1
L:L:?1 R:R:F344 30.95 1 Yes Yes 0 6 0 1
R:R:W345 R:R:W348 12.18 1 Yes Yes 8 8 2 1
L:L:?1 R:R:Q347 17.54 1 Yes Yes 0 8 0 1
R:R:Q347 W:W:?1 9.19 1 Yes Yes 8 0 1 1
L:L:?1 R:R:W348 10.72 1 Yes Yes 0 8 0 1
L:L:?1 W:W:?1 10.49 1 Yes Yes 0 0 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JED_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.59
Number of Linked Nodes 254
Number of Links 288
Number of Hubs 39
Number of Links mediated by Hubs 143
Number of Communities 9
Number of Nodes involved in Communities 51
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 86
Number Of Links MetaPath 85
Number of Shortest Paths 56145
Length Of Smallest Path 3
Average Path Length 13.3024
Length of Longest Path 32
Minimum Path Strength 1.43
Average Path Strength 7.01048
Maximum Path Strength 24.245
Minimum Path Correlation 0.7
Average Path Correlation 0.929189
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 51.2112
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.1408
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHSM
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHSM
NameHistamine
Synonymsbeta-aminoethylglyoxaline
Identifier
FormulaC5 H9 N3
Molecular Weight111.145
SMILES
PubChem774
Formal Charge0
Total Atoms17
Total Chiral Atoms0
Total Bonds17
Total Aromatic Bonds5

CodePO4
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodePO4
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9H3N8
Sequence
>9JED_nogp_Chain_R
LSTRVTLAF FMSLVAFAI MLGNALVIL AFVVDKNLR HRSSYFFLN 
LAISDFFVG VISIPLYIP HTLFEWDFG KEICVFWLT TDYLLCTAS 
VYNIVLISY DRYLSVSNA VSYRTQHTG VLKIVTLMV AVWVLAFLV 
NGPMILVSE SWKDEGSEC EPGFFSEWY ILAITSFLE FVIPVILVA 
YFNMNIYWS LWKRHVELL RARRLAKSL AILLGVFAV CWAPYSLFT 
IVLSFYSSA TGPKSVWYR IAFWLQWFN SFVNPLLYP LCHKRFQKA 
FLKIFCI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6WH4AAmine5-Hydroxytryptamine5-HT2AHomo sapiensMethiothepin--3.42020-09-23doi.org/10.1016/j.cell.2020.08.024
8H4IALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs)/β1/γ23.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4I (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4KALipidFree Fatty AcidFFA4Homo sapiensGW9508-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4K (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensGW9508-3.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4LALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs-CtGq)/β1/γ23.072023-06-21doi.org/10.1038/s41422-023-00835-x
8H4L (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.072023-06-21doi.org/10.1038/s41422-023-00835-x
8KH4AOrphanOrphanGPR161Homo sapiens--Gs/β1/γ23.12023-10-11doi.org/10.1038/s41467-023-41654-3
8KH4 (No Gprot) AOrphanOrphanGPR161Homo sapiens--3.12023-10-11doi.org/10.1038/s41467-023-41654-3
7YFCAAmineHistamineH4Homo sapiensHistamine-chim(NtGi1-Gs-CtGq)/β1/γ232023-10-25doi.org/10.1038/s41467-023-42260-z
7YFC (No Gprot) AAmineHistamineH4Homo sapiensHistamine-32023-10-25doi.org/10.1038/s41467-023-42260-z
7YFDAAmineHistamineH4Homo sapiensImetit-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-10-25doi.org/10.1038/s41467-023-42260-z
7YFD (No Gprot) AAmineHistamineH4Homo sapiensImetit-3.12023-10-25doi.org/10.1038/s41467-023-42260-z
8HN8AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ232023-12-20To be published
8HN8 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-32023-12-20To be published
8HOCAAmineHistamineH4Homo sapiensImetit-Gi1/β1/γ232023-12-20To be published
8HOC (No Gprot) AAmineHistamineH4Homo sapiensImetit-32023-12-20To be published
8TH4APeptideAngiotensinAT1Homo sapiensLosartanAT118-L Nanobody-3.32024-05-22doi.org/10.1038/s41589-024-01620-6
8YN9AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.32024-10-09doi.org/10.1038/s41467-024-52585-y
8YN9 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.32024-10-09doi.org/10.1038/s41467-024-52585-y
8YNAAAmineHistamineH4Homo sapiensImmepip-Gi1/β1/γ22.632024-10-16doi.org/10.2210/pdb8YN7/pdb
8YNA (No Gprot) AAmineHistamineH4Homo sapiensImmepip-2.632024-10-16doi.org/10.2210/pdb8YN7/pdb
9JEDAAmineHistamineH4Homo sapiensHistaminePO4Gi1/β1/γ22.582025-09-10doi.org/10.1038/s41401-025-01633-4
9JED (No Gprot) AAmineHistamineH4Homo sapiensHistaminePO42.582025-09-10doi.org/10.1038/s41401-025-01633-4
9L42AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.92025-10-22doi.org/10.3390/ph18030292
9L42 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.92025-10-22doi.org/10.3390/ph18030292
8JXTAAmineHistamineH4Homo sapiensHistaminePO4Gi1/β1/γ23.072024-03-20doi.org/10.1038/s41467-024-46840-5
8JXT (No Gprot) AAmineHistamineH4Homo sapiensHistaminePO43.072024-03-20doi.org/10.1038/s41467-024-46840-5
8JXVAAmineHistamineH4Homo sapiensClozapine-Gi1/β1/γ23.212024-03-20doi.org/10.1038/s41467-024-46840-5
8JXV (No Gprot) AAmineHistamineH4Homo sapiensClozapine-3.212024-03-20doi.org/10.1038/s41467-024-46840-5
8JXWAAmineHistamineH4Homo sapiensVUF6884-Gi1/β1/γ23.012024-03-20doi.org/10.1038/s41467-024-46840-5
8JXW (No Gprot) AAmineHistamineH4Homo sapiensVUF6884-3.012024-03-20doi.org/10.1038/s41467-024-46840-5
8JXXAAmineHistamineH4Homo sapiensClobenpropit-Gi1/β1/γ23.062024-03-20doi.org/10.1038/s41467-024-46840-5
8JXX (No Gprot) AAmineHistamineH4Homo sapiensClobenpropit-3.062024-03-20doi.org/10.1038/s41467-024-46840-5
9LRCAAmineHistamineH4Homo sapiensHistamine--2.842025-06-11doi.org/10.1038/s42003-025-08363-7
9LREAAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.842025-06-11doi.org/10.1038/s42003-025-08363-7
9LRE (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.842025-06-11doi.org/10.1038/s42003-025-08363-7
9JG1AAmineHistamineH4Homo sapiensAdriforant--3.622025-12-0310.1038/s41401-025-01633-4
9JG1 (No Gprot) AAmineHistamineH4Homo sapiensAdriforant-3.622025-12-0310.1038/s41401-025-01633-4




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Download 9JED_nogp.zip



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