Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 13.5638810
2R:R:F40 10.2525428
3R:R:L46 7.6925429
4R:R:R49 7.194537
5R:R:Y52 7.0275426
6R:R:F53 8.0275438
7R:R:F54 8.015408
8R:R:N56 10.22479
9R:R:D61 9.38409
10R:R:F62 5.29408
11R:R:F63 5.69406
12R:R:I69 6.47418
13R:R:Y72 10.524517
14R:R:F82 5.43667646
15R:R:Y95 9.4518
16R:R:Y113 8.56459
17R:R:Y122 9.515438
18R:R:N147 7.258518
19R:R:I151 5.025417
20R:R:S154 6.2575408
21R:R:K158 4.345446
22R:R:P166 11.03517
23R:R:F168 5.338506
24R:R:F183 4.62519
25R:R:V190 3.6425409
26R:R:F193 6.845457
27R:R:Y198 3.5225407
28R:R:R297 4.6775407
29R:R:L305 5.95408
30R:R:F312 5.73519
31R:R:W316 10.3514719
32R:R:Y319 8.955617
33R:R:K336 10.5225414
34R:R:F344 10.32516
35R:R:W345 8.448518
36R:R:W348 9.86714718
37R:R:N354 7.228509
38R:R:Y358 8.7475469
39R:R:F365 6.666528
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F344 14.293124.07YesYes106
2R:R:F344 R:R:Y72 13.92478.25YesYes167
3R:R:T76 R:R:Y72 24.648921.22NoYes057
4R:R:L77 R:R:T76 21.54044.42NoNo065
5R:R:L18 R:R:L77 29.2544.15NoNo056
6R:R:L18 R:R:R15 24.689213.36NoNo053
7L:L:?1 R:R:W348 47.691711.79YesYes108
8R:R:W348 R:R:Y72 15.30056.75YesYes187
9R:R:W345 R:R:W348 35.873812.18YesYes188
10R:R:M22 R:R:W345 27.630713.96NoYes078
11R:R:L77 R:R:M22 12.49717.07NoNo067
12R:R:R15 R:R:T17 19.77323.88NoNo033
13R:R:F21 R:R:T17 14.84573.89NoNo043
14R:R:I73 R:R:M22 13.74054.37NoNo067
15L:L:?1 R:R:W316 88.03824.29YesYes109
16R:R:N350 R:R:W316 99.49346.78NoYes099
17R:R:N350 R:R:N354 97.478712.26NoYes099
18R:R:D61 R:R:N354 28.1894.04YesYes099
19R:R:V64 R:R:W348 22.80116.13NoYes088
20R:R:S351 R:R:V64 22.00096.46NoNo098
21R:R:D61 R:R:S351 21.557711.78YesNo099
22R:R:D61 R:R:I29 10.07944.2YesNo098
23R:R:I105 R:R:N354 1008.5NoYes099
24R:R:I105 R:R:Y358 98.65310.88NoYes099
25R:R:I108 R:R:Y358 87.49717.25NoYes699
26R:R:F54 R:R:I108 86.38618.79YesNo089
27R:R:F365 R:R:F54 57.71937.5YesYes088
28R:R:F365 R:R:S51 44.85955.28YesNo289
29R:R:F40 R:R:S51 44.72715.28YesNo289
30R:R:F40 R:R:L55 38.895914.61YesNo087
31R:R:I37 R:R:L55 25.37424.28NoNo087
32R:R:F62 R:R:I37 23.48613.77YesNo088
33R:R:F62 R:R:V66 20.0387.87YesNo085
34R:R:M30 R:R:V66 18.06364.56NoNo065
35L:L:?1 R:R:Y95 62.623818.76YesYes108
36R:R:I151 R:R:Y95 19.46814.84YesYes178
37R:R:I151 R:R:T92 28.19483.04YesNo076
38R:R:F144 R:R:T92 24.22292.59NoNo056
39R:R:F144 R:R:P149 22.32335.78NoNo058
40R:R:L145 R:R:P149 21.3851.64NoNo048
41R:R:L145 R:R:V141 20.49272.98NoNo044
42R:R:V137 R:R:V141 19.6351.6NoNo044
43R:R:V133 R:R:V137 18.84071.6NoNo034
44R:R:V129 R:R:V133 18.16721.6NoNo043
45R:R:V129 R:R:Y52 17.77575.05NoYes046
46R:R:F40 R:R:Y52 20.44677.22YesYes286
47R:R:F27 R:R:M30 16.07762.49NoNo056
48R:R:F27 R:R:L31 14.08013.65NoNo054
49R:R:L31 R:R:L35 10.05072.77NoNo048
50R:R:F54 R:R:H362 25.86355.66YesNo089
51R:R:H362 R:R:R364 23.94086.77NoNo097
52R:R:H48 R:R:R364 20.83244.51NoNo077
53R:R:H48 R:R:Y122 17.98878.71NoYes078
54R:R:I132 R:R:Y52 18.58749.67NoYes076
55R:R:R49 R:R:Y122 11.04655.14YesYes378
56R:R:I59 R:R:L55 11.66827.14NoNo067
57R:R:N147 R:R:V146 20.10717.39YesNo087
58R:R:V146 R:R:Y103 15.63443.79NoNo077
59R:R:V139 R:R:Y103 12.61223.79NoNo087
60R:R:P166 R:R:Y95 35.620511.13YesYes178
61R:R:F168 R:R:P166 45.538810.11YesYes067
62R:R:F168 R:R:S154 55.26712.64YesYes068
63R:R:G167 R:R:S154 47.20821.86NoYes068
64R:R:G167 R:R:K158 45.16461.74NoYes066
65R:R:C87 R:R:K158 17.37853.23NoYes496
66R:R:C87 R:R:F82 15.42718.38NoYes496
67R:R:C164 R:R:K158 17.39013.23NoYes496
68R:R:C164 R:R:F82 15.42714.19NoYes496
69R:R:E182 R:R:W316 32.18411.99NoYes189
70R:R:F312 R:R:W316 49.49346.01YesYes199
71R:R:V102 R:R:W316 37.04249.81NoYes189
72R:R:P186 R:R:V102 39.56373.53NoNo098
73R:R:P186 R:R:V106 30.55493.53NoNo097
74R:R:L189 R:R:V106 28.71862.98NoNo077
75R:R:F193 R:R:L189 26.87083.65YesNo077
76R:R:F193 R:R:Y113 13.65428.25YesYes579
77R:R:N147 R:R:T178 22.80684.39YesNo088
78L:L:?1 R:R:Y319 33.34688.83YesYes107
79R:R:Y319 R:R:Y340 31.412614.89YesNo075
80R:R:K336 R:R:Y340 10.016111.94YesNo045
81R:R:T323 R:R:Y319 26.35858.74NoYes077
82R:R:L175 R:R:T323 23.77398.84NoNo077
83R:R:L175 R:R:S327 10.67813NoNo076
84R:R:I324 R:R:L175 10.67814.28NoNo067
85R:R:F312 R:R:V190 50.65053.93YesYes099
86R:R:N194 R:R:V190 42.15984.43NoYes099
87R:R:L305 R:R:N194 40.42718.24YesNo089
88R:R:L301 R:R:L305 31.7586.92NoYes088
89R:R:L301 R:R:Y198 11.70855.86NoYes087
90R:R:L201 R:R:L301 19.1174.15NoNo088
91R:R:L201 R:R:R297 17.44763.64NoYes087
92R:R:E294 R:R:R297 11.73735.82NoYes057
93R:R:L308 R:R:Y358 12.629511.72NoYes089
94R:R:L308 R:R:L357 10.51695.54NoNo088
95R:R:F322 R:R:Y340 22.74357.22NoNo065
96R:R:F322 R:R:S337 11.4612.64NoNo062
97R:R:E182 R:R:N147 29.846910.52NoYes188
98R:R:Q347 R:R:W316 21.033829.57NoYes189
99R:R:Q347 R:R:Y319 20.34319.02NoYes187
100R:R:F168 R:R:T178 21.71315.19YesNo068
101R:R:I151 R:R:P166 10.44785.08YesYes177
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D94 12.77 1 Yes No 0 8 0 1
L:L:?1 R:R:Y95 18.76 1 Yes Yes 0 8 0 1
L:L:?1 R:R:C98 10.46 1 Yes No 0 8 0 1
L:L:?1 R:R:W316 4.29 1 Yes Yes 0 9 0 1
L:L:?1 R:R:Y319 8.83 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F344 24.07 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q347 17.54 1 Yes No 0 8 0 1
L:L:?1 R:R:W348 11.79 1 Yes Yes 0 8 0 1
R:R:V64 R:R:W348 6.13 0 No Yes 8 8 2 1
R:R:D94 R:R:S68 8.83 1 No No 8 8 1 2
R:R:I69 R:R:W345 4.7 1 Yes Yes 8 8 2 2
R:R:I69 R:R:W348 12.92 1 Yes Yes 8 8 2 1
R:R:W90 R:R:Y72 8.68 1 No Yes 7 7 2 2
R:R:F344 R:R:Y72 8.25 1 Yes Yes 6 7 1 2
R:R:W345 R:R:Y72 7.72 1 Yes Yes 8 7 2 2
R:R:W348 R:R:Y72 6.75 1 Yes Yes 8 7 1 2
R:R:F344 R:R:W90 4.01 1 Yes No 6 7 1 2
R:R:D94 R:R:W348 12.28 1 No Yes 8 8 1 1
R:R:N147 R:R:Y95 8.14 1 Yes Yes 8 8 2 1
R:R:I151 R:R:Y95 4.84 1 Yes Yes 7 8 2 1
R:R:P166 R:R:Y95 11.13 1 Yes Yes 7 8 2 1
R:R:F169 R:R:Y95 4.13 1 No Yes 6 8 2 1
R:R:F312 R:R:V102 9.18 1 Yes No 9 8 2 2
R:R:V102 R:R:W316 9.81 1 No Yes 8 9 2 1
R:R:E182 R:R:N147 10.52 1 No Yes 8 8 2 2
R:R:I151 R:R:P166 5.08 1 Yes Yes 7 7 2 2
R:R:F169 R:R:P166 17.34 1 No Yes 6 7 2 2
R:R:E182 R:R:W316 11.99 1 No Yes 8 9 2 1
R:R:F183 R:R:F312 4.29 1 Yes Yes 9 9 2 2
R:R:F183 R:R:W316 4.01 1 Yes Yes 9 9 2 1
R:R:F312 R:R:W316 6.01 1 Yes Yes 9 9 2 1
R:R:Q347 R:R:W316 29.57 1 No Yes 8 9 1 1
R:R:N350 R:R:W316 6.78 0 No Yes 9 9 2 1
R:R:T323 R:R:Y319 8.74 0 No Yes 7 7 2 1
R:R:Y319 R:R:Y340 14.89 1 Yes No 7 5 1 2
R:R:A343 R:R:Y319 4 0 No Yes 5 7 2 1
R:R:F344 R:R:Y319 8.25 1 Yes Yes 6 7 1 1
R:R:Q347 R:R:Y319 9.02 1 No Yes 8 7 1 1
R:R:F344 R:R:W348 7.02 1 Yes Yes 6 8 1 1
R:R:W345 R:R:W348 12.18 1 Yes Yes 8 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9L42_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.77
Number of Linked Nodes 256
Number of Links 293
Number of Hubs 39
Number of Links mediated by Hubs 151
Number of Communities 9
Number of Nodes involved in Communities 58
Number of Links involved in Communities 80
Path Summary
Number Of Nodes in MetaPath 102
Number Of Links MetaPath 101
Number of Shortest Paths 51063
Length Of Smallest Path 3
Average Path Length 13.5493
Length of Longest Path 35
Minimum Path Strength 1.47
Average Path Strength 7.31081
Maximum Path Strength 21.415
Minimum Path Correlation 0.7
Average Path Correlation 0.927778
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 48.2568
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.3528
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHSM
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHSM
NameHistamine
Synonymsbeta-aminoethylglyoxaline
Identifier
FormulaC5 H9 N3
Molecular Weight111.145
SMILES
PubChem774
Formal Charge0
Total Atoms17
Total Chiral Atoms0
Total Bonds17
Total Aromatic Bonds5

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9H3N8
Sequence
>9L42_nogp_Chain_R
TRVTLAFFM SLVAFAIML GNALVILAF VVDKNLRHR SSYFFLNLA 
ISDFFVGVI SIPLYIPHT LFEWDFGKE ICVFWLTTD YLLCTASVY 
NIVLISYDR YLSVSNAVS YRTQHTGVL KIVTLMVAV WVLAFLVNG 
PMILVSESW KDEGSECEP GFFSEWYIL AITSFLEFV IPVILVAYF 
NMNIYWSLW KRDEHVELL RARRLAKSL AILLGVFAV CWAPYSLFT 
IVLSFYSSA PKSVWYRIA FWLQWFNSF VNPLLYPLC HKRFQKAFL 
KIF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6WH4AAmine5-Hydroxytryptamine5-HT2AHomo sapiensMethiothepin--3.42020-09-23doi.org/10.1016/j.cell.2020.08.024
8H4IALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs)/β1/γ23.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4I (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.062023-06-21doi.org/10.1038/s41422-023-00835-x
8H4KALipidFree Fatty AcidFFA4Homo sapiensGW9508-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4K (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensGW9508-3.12023-06-21doi.org/10.1038/s41422-023-00835-x
8H4LALipidFree Fatty AcidFFA4Homo sapiensDoconexent-chim(NtGi1-Gs-CtGq)/β1/γ23.072023-06-21doi.org/10.1038/s41422-023-00835-x
8H4L (No Gprot) ALipidFree Fatty AcidFFA4Homo sapiensDoconexent-3.072023-06-21doi.org/10.1038/s41422-023-00835-x
8KH4AOrphanOrphanGPR161Homo sapiens--Gs/β1/γ23.12023-10-11doi.org/10.1038/s41467-023-41654-3
8KH4 (No Gprot) AOrphanOrphanGPR161Homo sapiens--3.12023-10-11doi.org/10.1038/s41467-023-41654-3
7YFCAAmineHistamineH4Homo sapiensHistamine-chim(NtGi1-Gs-CtGq)/β1/γ232023-10-25doi.org/10.1038/s41467-023-42260-z
7YFC (No Gprot) AAmineHistamineH4Homo sapiensHistamine-32023-10-25doi.org/10.1038/s41467-023-42260-z
7YFDAAmineHistamineH4Homo sapiensImetit-chim(NtGi1-Gs-CtGq)/β1/γ23.12023-10-25doi.org/10.1038/s41467-023-42260-z
7YFD (No Gprot) AAmineHistamineH4Homo sapiensImetit-3.12023-10-25doi.org/10.1038/s41467-023-42260-z
8HN8AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ232023-12-20To be published
8HN8 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-32023-12-20To be published
8HOCAAmineHistamineH4Homo sapiensImetit-Gi1/β1/γ232023-12-20To be published
8HOC (No Gprot) AAmineHistamineH4Homo sapiensImetit-32023-12-20To be published
8TH4APeptideAngiotensinAT1Homo sapiensLosartanAT118-L Nanobody-3.32024-05-22doi.org/10.1038/s41589-024-01620-6
8YN9AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.32024-10-09doi.org/10.1038/s41467-024-52585-y
8YN9 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.32024-10-09doi.org/10.1038/s41467-024-52585-y
8YNAAAmineHistamineH4Homo sapiensImmepip-Gi1/β1/γ22.632024-10-16doi.org/10.2210/pdb8YN7/pdb
8YNA (No Gprot) AAmineHistamineH4Homo sapiensImmepip-2.632024-10-16doi.org/10.2210/pdb8YN7/pdb
9JEDAAmineHistamineH4Homo sapiensHistaminePO4Gi1/β1/γ22.582025-09-10doi.org/10.1038/s41401-025-01633-4
9JED (No Gprot) AAmineHistamineH4Homo sapiensHistaminePO42.582025-09-10doi.org/10.1038/s41401-025-01633-4
9L42AAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.92025-10-22doi.org/10.3390/ph18030292
9L42 (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.92025-10-22doi.org/10.3390/ph18030292
8JXTAAmineHistamineH4Homo sapiensHistaminePO4Gi1/β1/γ23.072024-03-20doi.org/10.1038/s41467-024-46840-5
8JXT (No Gprot) AAmineHistamineH4Homo sapiensHistaminePO43.072024-03-20doi.org/10.1038/s41467-024-46840-5
8JXVAAmineHistamineH4Homo sapiensClozapine-Gi1/β1/γ23.212024-03-20doi.org/10.1038/s41467-024-46840-5
8JXV (No Gprot) AAmineHistamineH4Homo sapiensClozapine-3.212024-03-20doi.org/10.1038/s41467-024-46840-5
8JXWAAmineHistamineH4Homo sapiensVUF6884-Gi1/β1/γ23.012024-03-20doi.org/10.1038/s41467-024-46840-5
8JXW (No Gprot) AAmineHistamineH4Homo sapiensVUF6884-3.012024-03-20doi.org/10.1038/s41467-024-46840-5
8JXXAAmineHistamineH4Homo sapiensClobenpropit-Gi1/β1/γ23.062024-03-20doi.org/10.1038/s41467-024-46840-5
8JXX (No Gprot) AAmineHistamineH4Homo sapiensClobenpropit-3.062024-03-20doi.org/10.1038/s41467-024-46840-5
9LRCAAmineHistamineH4Homo sapiensHistamine--2.842025-06-11doi.org/10.1038/s42003-025-08363-7
9LREAAmineHistamineH4Homo sapiensHistamine-Gi1/β1/γ22.842025-06-11doi.org/10.1038/s42003-025-08363-7
9LRE (No Gprot) AAmineHistamineH4Homo sapiensHistamine-2.842025-06-11doi.org/10.1038/s42003-025-08363-7
9JG1AAmineHistamineH4Homo sapiensAdriforant--3.622025-12-0310.1038/s41401-025-01633-4
9JG1 (No Gprot) AAmineHistamineH4Homo sapiensAdriforant-3.622025-12-0310.1038/s41401-025-01633-4




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Download 9L42_nogp.zip



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