Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F569 4.46833629
2R:R:S574 4.065409
3R:R:I581 3.4454
4R:R:L593 4.3475428
5R:R:I597 2.9775407
6R:R:R624 4.7775409
7R:R:L634 5.7975409
8R:R:D638 4.2775407
9R:R:H665 4.915439
10R:R:F666 5.4525407
11R:R:Y668 5.782528
12R:R:L669 3.8375439
13R:R:L671 4.118567
14R:R:W674 7.168519
15R:R:M675 4.09469
16R:R:Y684 5.77418
17R:R:I686 2.96487
18R:R:L688 2.985416
19R:R:M698 4.9625418
20R:R:G702 3.165417
21R:R:P710 4.722539
22R:R:Y727 7.5575479
23R:R:L735 7.0625409
24R:R:W737 6.422506
25R:R:P743 4.602508
26R:R:P798 2.7425449
27R:R:L799 4.21406
28R:R:L800 3.5525409
29R:R:W804 7.78571729
30R:R:T810 4.55833627
31R:R:H820 7.7775428
32R:R:F823 5.80333629
33R:R:N827 9.885429
34R:R:F829 5.262547
35R:R:F832 6.1575445
36R:R:F833 3.426547
37W:W:?1 6.84625810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F569 R:R:Y668 12.39023.09YesYes298
2R:R:L572 R:R:Y668 29.13878.21NoYes098
3R:R:F641 R:R:L572 25.92873.65NoNo099
4R:R:F641 R:R:I571 18.83785.02NoNo097
5R:R:I571 R:R:V577 15.1024.61NoNo073
6R:R:S568 R:R:V577 11.34563.23NoNo093
7R:R:D638 R:R:Y668 18.28433.45YesYes078
8R:R:W804 R:R:Y668 21.8544.82YesYes298
9R:R:F569 R:R:F823 13.07513.22YesYes299
10R:R:F823 R:R:W804 38.54724.01YesYes299
11R:R:N827 R:R:W804 34.036715.82YesYes299
12R:R:F823 R:R:T810 68.46773.89YesYes297
13R:R:H820 R:R:T810 24.9815.48YesYes287
14R:R:P575 R:R:S574 18.89313.56NoYes069
15R:R:S574 R:R:T810 56.63784.8YesYes097
16R:R:I811 R:R:S574 43.60434.64NoYes059
17R:R:S574 R:R:S814 11.69843.26YesNo095
18R:R:P575 R:R:W737 17.813912.16NoYes066
19R:R:I811 R:R:W737 17.91083.52NoYes056
20R:R:H820 R:R:P578 26.20556.1YesNo084
21R:R:P578 R:R:T580 23.34833.5NoNo043
22R:R:I581 R:R:T580 17.5514.56YesNo543
23R:R:I581 R:R:P583 11.78141.69YesNo041
24R:R:F829 R:R:F833 21.50813.22YesYes477
25R:R:F833 R:R:L826 53.18572.44YesNo076
26R:R:L826 R:R:T803 56.9638.84NoNo069
27R:R:N827 R:R:T803 58.83094.39YesNo099
28R:R:L600 R:R:L634 12.16195.54NoYes099
29R:R:D638 R:R:L634 17.24666.79YesYes079
30R:R:D638 R:R:I597 14.65242.8YesYes077
31R:R:F832 R:R:F833 12.90215.36YesYes457
32R:R:E607 R:R:M627 98.60956.77NoNo097
33R:R:L799 R:R:M627 1007.07YesNo067
34R:R:I630 R:R:L799 83.2932.85NoYes086
35R:R:I630 R:R:L671 83.11312.85NoYes687
36R:R:L634 R:R:L671 27.24325.54YesYes097
37R:R:F672 R:R:L671 68.32244.87NoYes097
38R:R:F672 R:R:W804 67.132519.04NoYes099
39R:R:F610 R:R:L845 12.30722.44NoNo088
40R:R:F610 R:R:R624 14.32726.41NoYes089
41R:R:E607 R:R:R624 91.40095.82NoYes099
42R:R:I625 W:W:?1 12.54243.47NoYes170
43R:R:G702 W:W:?1 54.98442.77YesYes170
44R:R:G702 R:R:W674 65.75582.81YesYes179
45R:R:N629 R:R:W674 70.681418.08NoYes199
46R:R:N629 R:R:V628 75.93912.96NoNo097
47R:R:R624 R:R:V628 77.56492.62YesNo097
48R:R:L681 W:W:?1 10.23878.97NoYes070
49R:R:L671 R:R:M675 16.25042.83YesYes679
50R:R:L671 R:R:S633 48.37084.5YesNo078
51R:R:S633 R:R:S670 47.53374.89NoNo088
52R:R:F666 R:R:F667 27.63066.43YesNo078
53R:R:F666 R:R:P710 39.95162.89YesYes079
54R:R:P710 R:R:S670 46.85583.56YesNo098
55R:R:F663 R:R:F667 23.52134.29NoNo088
56R:R:F663 R:R:W640 21.646518.04NoNo086
57R:R:A660 R:R:W640 17.42653.89NoNo076
58R:R:A660 R:R:C657 10.99271.81NoNo079
59R:R:L744 R:R:W737 29.39476.83NoYes086
60R:R:L735 R:R:L744 45.88724.15YesNo098
61R:R:L735 R:R:P743 46.98726.57YesYes098
62R:R:P743 R:R:T721 23.30681.75YesNo089
63R:R:T721 R:R:Y727 14.00216.24NoYes799
64R:R:I811 R:R:V748 25.40993.07NoNo057
65R:R:L744 R:R:V748 18.42272.98NoNo087
66R:R:L669 R:R:P710 56.3683.28YesYes399
67R:R:H665 R:R:L669 49.99655.14YesYes399
68R:R:H665 R:R:T717 21.40442.74YesNo099
69R:R:F673 R:R:P710 35.987510.11NoYes389
70R:R:F673 R:R:I754 37.03913.77NoNo089
71R:R:I754 R:R:N758 39.09374.25NoNo099
72R:R:M675 R:R:N758 15.05364.21YesNo099
73R:R:I686 R:R:I687 13.97441.47YesNo076
74R:R:I687 R:R:L688 17.85541.43NoYes066
75R:R:L688 W:W:?1 21.46663.36YesYes160
76R:R:L799 R:R:L800 43.07852.77YesYes069
77R:R:L800 R:R:N758 46.43388.24YesNo099
78R:R:N736 R:R:R729 18.67177.23NoNo085
79R:R:G740 R:R:N736 27.92815.09NoNo048
80R:R:G740 R:R:P743 32.53556.09NoYes048
81R:R:L752 R:R:V748 14.71464.47NoNo087
82R:R:I808 R:R:L752 12.92295.71NoNo078
83R:R:L800 R:R:V762 27.67211.49YesNo098
84R:R:L766 R:R:V762 18.66481.49NoNo078
85R:R:L766 R:R:S792 11.82294.5NoNo078
86R:R:F833 R:R:F837 10.35633.22YesNo478
87R:R:G809 R:R:I808 11.11733.53NoNo077
88R:R:P743 R:R:T717 20.15915.25YesNo089
89R:R:H665 R:R:L735 31.74683.86YesYes099
90R:R:F823 R:R:N827 20.498115.71YesYes299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:H621 R:R:I625 3.98 1 No No 6 7 2 1
R:R:H621 R:R:M699 2.63 1 No No 6 7 2 2
R:R:L681 R:R:T622 2.95 0 No No 7 7 1 2
R:R:M698 R:R:T622 3.01 1 Yes No 8 7 1 2
R:R:I625 R:R:M699 2.92 1 No No 7 7 1 2
R:R:I625 W:W:?1 3.47 1 No Yes 7 0 1 0
R:R:G702 R:R:W674 2.81 1 Yes Yes 7 9 1 2
R:R:G702 R:R:M677 5.24 1 Yes No 7 6 1 1
R:R:L705 R:R:M677 5.65 0 No No 6 6 2 1
R:R:M677 W:W:?1 9.16 1 No Yes 6 0 1 0
R:R:I680 W:W:?1 15.03 0 No Yes 8 0 1 0
R:R:L681 R:R:R685 6.07 0 No No 7 8 1 2
R:R:L681 W:W:?1 8.97 0 No Yes 7 0 1 0
R:R:L688 R:R:Y684 5.86 1 Yes Yes 6 8 1 1
R:R:M693 R:R:Y684 9.58 1 No Yes 5 8 2 1
R:R:M698 R:R:Y684 4.79 1 Yes Yes 8 8 1 1
R:R:Y684 W:W:?1 2.85 1 Yes Yes 8 0 1 0
R:R:L688 W:W:?1 3.36 1 Yes Yes 6 0 1 0
R:R:M693 R:R:M698 2.89 1 No Yes 5 8 2 1
R:R:M698 W:W:?1 9.16 1 Yes Yes 8 0 1 0
R:R:G702 W:W:?1 2.77 1 Yes Yes 7 0 1 0
R:R:G702 R:R:V701 1.84 1 Yes No 7 6 1 2
R:R:I687 R:R:L688 1.43 0 No Yes 6 6 2 1
R:R:H691 R:R:L688 1.29 0 No Yes 7 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8G2Y_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.62
Number of Linked Nodes 230
Number of Links 265
Number of Hubs 37
Number of Links mediated by Hubs 134
Number of Communities 8
Number of Nodes involved in Communities 49
Number of Links involved in Communities 65
Path Summary
Number Of Nodes in MetaPath 91
Number Of Links MetaPath 90
Number of Shortest Paths 41102
Length Of Smallest Path 3
Average Path Length 13.7473
Length of Longest Path 31
Minimum Path Strength 1.22
Average Path Strength 5.28795
Maximum Path Strength 17.43
Minimum Path Correlation 0.7
Average Path Correlation 0.917162
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 45.1642
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.2427
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeLPC
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeLPC
Name[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE
Synonyms
Identifier
FormulaC22 H47 N O7 P
Molecular Weight468.585
SMILES
PubChem444675
Formal Charge1
Total Atoms78
Total Chiral Atoms2
Total Bonds77
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ5T601
Sequence
>8G2Y_nogp_Chain_R
TSFSILMSP FVPSTIFPV VKWITYVGL GISIGSLIL CLIIEALFW 
QTSHTRRIC MVNIALSLL IADVWFIVG ATVGVCTAA VFFTHFFYL 
SLFFWMLML GILLAYRII LVFHHMAQH LMMAVGFCL GYGCPLIIS 
VITIAVTQY KRKDVCWLN WSNGSKPLL AFVVPALAI VAVNFVVVL 
LVLTKLWTI IRVGKSLLI LTPLLGLTW GFGIGTIVD SQNLAWHVI 
FALLNAFQG FFILCFGIL LDSKLRQL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8G2YB2AdhesionAdhesionADGRF1Homo sapiens-LPCchim(Gs-CtGq)/β1/γ23.442023-05-10doi.org/10.1038/s41467-023-38083-7
8G2Y (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens-LPC3.442023-05-10doi.org/10.1038/s41467-023-38083-7
7WU3B2AdhesionAdhesionADGRF1Homo sapiens-K6GGs/β1/γ23.12022-04-27doi.org/10.1038/s41586-022-04580-w
7WU3 (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens-K6G3.12022-04-27doi.org/10.1038/s41586-022-04580-w
7WU4B2AdhesionAdhesionADGRF1Homo sapiens-K6GGi1/β1/γ23.42022-04-27doi.org/10.1038/s41586-022-04580-w
7WU4 (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens-K6G3.42022-04-27doi.org/10.1038/s41586-022-04580-w
7WU5B2AdhesionAdhesionADGRF1Homo sapiens-K6GGi1/β1/γ232022-04-27doi.org/10.1038/s41586-022-04580-w
7WU5 (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens-K6G32022-04-27doi.org/10.1038/s41586-022-04580-w
7WXUB2AdhesionAdhesionADGRF1Homo sapiens--chim(NtGi1-Gs-CtGq)/β1/γ22.852022-09-28doi.org/10.1038/s41467-022-33173-4
7WXU (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens--2.852022-09-28doi.org/10.1038/s41467-022-33173-4
7WXWB2AdhesionAdhesionADGRF1Homo sapiens--chim(NtGi1-Gs)/β1/γ22.842022-09-28doi.org/10.1038/s41467-022-33173-4
7WXW (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens--2.842022-09-28doi.org/10.1038/s41467-022-33173-4
7WY0B2AdhesionAdhesionADGRF1Homo sapiens--chim(NtGi1L-G13)/β1/γ22.832022-09-28doi.org/10.1038/s41467-022-33173-4
7WY0 (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens--2.832022-09-28doi.org/10.1038/s41467-022-33173-4
7WZ7B2AdhesionAdhesionADGRF1Homo sapiens--chim(NtGi1-G12)/β1/γ22.832022-09-28doi.org/10.1038/s41467-022-33173-4
7WZ7 (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens--2.832022-09-28doi.org/10.1038/s41467-022-33173-4
7X2VB2AdhesionAdhesionADGRF1Homo sapiens--Gi1/β1/γ23.092022-09-28doi.org/10.1038/s41467-022-33173-4
7X2V (No Gprot) B2AdhesionAdhesionADGRF1Homo sapiens--3.092022-09-28doi.org/10.1038/s41467-022-33173-4




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8G2Y_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.