Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N54 6.49409
2R:R:E64 7.9575407
3R:R:L74 3.9125408
4R:R:L78 6.396529
5R:R:D82 8.955429
6R:R:V98 3.53406
7R:R:W102 7.04286719
8R:R:F112 6.874516
9R:R:D116 9.8925418
10R:R:W125 9.85407
11R:R:H126 7.47429728
12R:R:Y135 8.315409
13R:R:R148 10.2375438
14R:R:W161 8.752529
15R:R:Y195 7.486558
16R:R:F204 10.02408
17R:R:Y205 8.55407
18R:R:Y215 5.70333609
19R:R:E340 5.27408
20R:R:F354 7.745409
21R:R:W358 7.21857718
22R:R:L359 3.82407
23R:R:F361 10.295418
24R:R:F362 11.964517
25R:R:L368 4.105464
26R:R:P369 2.9025407
27R:R:M377 4.21464
28R:R:W387 7.088518
29R:R:Y390 10.12518
30R:R:N396 9.5275429
31R:R:I399 4.3975408
32R:R:Y400 4.68857729
33R:R:Y402 4.905406
34R:R:F407 7.30333608
35L:L:?1 7.352941710
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:A93 10.87474.99YesNo107
2L:L:?1 R:R:W102 32.98617.22YesYes109
3R:R:L104 R:R:W102 26.657413.67NoYes079
4R:R:L104 R:R:L95 11.59332.77NoNo076
5L:L:?1 R:R:Y390 18.401115.6YesYes108
6R:R:V57 R:R:Y402 18.40115.05NoYes096
7R:R:A401 R:R:V57 31.21455.09NoNo089
8R:R:A401 R:R:F407 33.74378.32NoYes088
9R:R:F407 R:R:I75 70.34545.02YesNo088
10R:R:I75 R:R:Y400 72.69643.63NoYes089
11R:R:L78 R:R:Y400 66.24513.52YesYes299
12R:R:L78 R:R:N396 51.81069.61YesYes299
13R:R:N392 R:R:N396 10012.26NoYes099
14R:R:N392 R:R:W358 97.04187.91NoYes098
15L:L:?1 R:R:W358 77.55434.33YesYes108
16R:R:L127 R:R:Y400 38.6637.03NoYes089
17R:R:L127 R:R:N396 38.64624.12NoYes089
18R:R:N54 R:R:S86 15.98334.47YesNo098
19R:R:D82 R:R:N54 20.56276.73YesYes099
20R:R:D82 R:R:N396 10.958212.12YesYes299
21R:R:E64 R:R:L67 10.579410.6YesNo078
22R:R:F407 R:R:L67 13.19784.87YesNo088
23R:R:A153 R:R:Y73 10.99161.33NoNo076
24R:R:A153 R:R:L74 12.78553.15NoYes078
25R:R:I130 R:R:L74 40.32874.28NoYes098
26R:R:I130 R:R:Y400 32.72424.84NoYes299
27R:R:D133 R:R:L74 23.98894.07NoYes098
28R:R:D133 R:R:R148 20.55718.34NoYes398
29R:R:H126 R:R:L78 29.52657.71YesYes289
30R:R:K101 R:R:T103 11.76041.5NoNo055
31R:R:L104 R:R:T103 13.68251.47NoNo075
32R:R:F354 R:R:I124 16.674110.05YesNo098
33R:R:I124 R:R:W358 17.43739.4NoYes088
34R:R:F204 R:R:F354 40.13378.57YesYes089
35R:R:F204 R:R:F362 48.211722.51YesYes087
36L:L:?1 R:R:F362 28.6247.72YesYes107
37R:R:H126 R:R:T160 14.48478.21YesNo088
38R:R:T160 R:R:W125 12.91923.64NoYes087
39R:R:F354 R:R:M211 53.78278.71YesNo099
40R:R:R134 R:R:Y400 24.28974.12NoYes299
41R:R:M351 R:R:Y215 56.2735.99NoYes089
42R:R:M211 R:R:M351 53.92764.33NoNo098
43R:R:I218 R:R:Y135 12.49034.84NoYes099
44R:R:I218 R:R:Y215 18.60723.63NoYes099
45R:R:R148 R:R:Y144 16.440113.38YesNo088
46R:R:N146 R:R:V145 11.05854.43NoNo056
47R:R:V145 R:R:Y144 12.86351.26NoNo068
48R:R:P170 R:R:Y195 11.82735.56NoYes588
49R:R:S199 R:R:Y195 19.548710.17NoYes088
50L:L:?1 R:R:S199 21.25351.9YesNo008
51R:R:F201 R:R:Y205 12.11715.47NoYes057
52R:R:F204 R:R:Y205 12.17834.13YesYes087
53R:R:L368 R:R:P369 13.71031.64YesYes047
54R:R:L368 R:R:M377 23.19785.65YesYes644
55R:R:G382 R:R:M377 32.54041.75NoYes044
56R:R:G382 R:R:I385 34.36211.76NoNo046
57R:R:I385 R:R:P360 36.17273.39NoNo069
58R:R:L359 R:R:P360 41.53763.28YesNo079
59R:R:F204 R:R:L359 46.80224.87YesYes087
60R:R:L347 R:R:Y215 46.65744.69NoYes089
61R:R:I350 R:R:Y400 27.52094.84NoYes089
62R:R:E340 R:R:T343 34.49022.82YesNo088
63R:R:L347 R:R:T343 36.32312.95NoNo088
64R:R:E340 R:R:I226 15.38725.47YesNo086
65R:R:L337 R:R:R341 11.24793.64NoNo056
66R:R:E340 R:R:R341 13.46523.49YesNo086
67R:R:I399 R:R:Y400 15.67694.84YesYes089
68R:R:D406 R:R:N404 10.57946.73NoNo079
69R:R:F407 R:R:N404 13.197812.08YesNo089
70R:R:A79 R:R:V57 10.57943.39NoNo099
71R:R:D82 R:R:L78 14.0788.14YesYes299
72R:R:R134 R:R:Y215 32.69087.2NoYes099
73R:R:I350 R:R:Y215 24.49586.04NoYes089
74R:R:F362 R:R:W358 26.696410.02YesYes178
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D116 R:R:V89 10.22 1 Yes No 8 8 1 2
R:R:L90 R:R:W387 3.42 1 No Yes 8 8 2 2
R:R:L90 R:R:Y390 3.52 1 No Yes 8 8 2 1
R:R:M92 R:R:W102 4.65 1 No Yes 6 9 2 1
R:R:F112 R:R:M92 17.42 1 Yes No 6 6 1 2
R:R:A93 R:R:W387 3.89 1 No Yes 7 8 1 2
R:R:A93 R:R:Y390 5.34 1 No Yes 7 8 1 1
L:L:?1 R:R:A93 4.99 1 Yes No 0 7 0 1
R:R:W102 R:R:Y96 10.61 1 Yes No 9 6 1 1
L:L:?1 R:R:Y96 5.2 1 Yes No 0 6 0 1
R:R:L104 R:R:W102 13.67 0 No Yes 7 9 2 1
R:R:C109 R:R:W102 3.92 1 No Yes 9 9 2 1
R:R:F112 R:R:W102 4.01 1 Yes Yes 6 9 1 1
R:R:C187 R:R:W102 5.22 1 No Yes 9 9 1 1
L:L:?1 R:R:W102 7.22 1 Yes Yes 0 9 0 1
R:R:F112 R:R:T108 3.89 1 Yes No 6 6 1 2
R:R:C109 R:R:C187 7.28 1 No No 9 9 2 1
R:R:F112 R:R:L111 3.65 1 Yes No 6 5 1 2
L:L:?1 R:R:F112 5.4 1 Yes Yes 0 6 0 1
L:L:?1 R:R:I113 7.23 1 Yes No 0 7 0 1
R:R:C120 R:R:D116 4.67 1 No Yes 7 8 1 1
R:R:D116 R:R:Y390 12.64 1 Yes Yes 8 8 1 1
L:L:?1 R:R:D116 12.04 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V117 7.55 1 Yes No 0 8 0 1
R:R:C120 R:R:W358 5.22 1 No Yes 7 8 1 1
L:L:?1 R:R:C120 4.02 1 Yes No 0 7 0 1
R:R:I124 R:R:W358 9.4 0 No Yes 8 8 2 1
L:L:?1 R:R:C187 6.03 1 Yes No 0 9 0 1
L:L:?1 R:R:I189 6.33 1 Yes No 0 6 0 1
R:R:S199 R:R:Y195 10.17 0 No Yes 8 8 1 2
R:R:F362 R:R:T200 7.78 1 Yes No 7 7 1 2
R:R:F204 R:R:F362 22.51 0 Yes Yes 8 7 2 1
R:R:F361 R:R:W358 8.02 1 Yes Yes 8 8 1 1
R:R:F362 R:R:W358 10.02 1 Yes Yes 7 8 1 1
R:R:G389 R:R:W358 5.63 0 No Yes 8 8 2 1
R:R:N392 R:R:W358 7.91 0 No Yes 9 8 2 1
L:L:?1 R:R:W358 4.33 1 Yes Yes 0 8 0 1
R:R:F361 R:R:F362 11.79 1 Yes Yes 8 7 1 1
R:R:F361 R:R:N386 3.62 1 Yes No 8 7 1 1
L:L:?1 R:R:F361 17.75 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F362 7.72 1 Yes Yes 0 7 0 1
L:L:?1 R:R:N386 8.7 1 Yes No 0 7 0 1
R:R:W387 R:R:Y390 13.5 1 Yes Yes 8 8 2 1
L:L:?1 R:R:Y390 15.6 1 Yes Yes 0 8 0 1
R:R:A203 R:R:T121 3.36 0 No No 8 8 1 2
R:R:S168 R:R:V117 3.23 0 No No 8 8 2 1
L:L:?1 R:R:A203 2.99 1 Yes No 0 8 0 1
L:L:?1 R:R:S199 1.9 1 Yes No 0 8 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8PKM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.42
Number of Linked Nodes 256
Number of Links 281
Number of Hubs 35
Number of Links mediated by Hubs 149
Number of Communities 6
Number of Nodes involved in Communities 41
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 46590
Length Of Smallest Path 3
Average Path Length 11.874
Length of Longest Path 25
Minimum Path Strength 1.34
Average Path Strength 6.25732
Maximum Path Strength 17.15
Minimum Path Correlation 0.7
Average Path Correlation 0.928231
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 52.3067
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.3999
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• cation binding   • binding   • ion binding   • serotonin binding   • amine binding   • heterocyclic compound binding   • small molecule binding   • G protein-coupled amine receptor activity   • G protein-coupled serotonin receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Gi/o-coupled serotonin receptor activity   • neurotransmitter receptor activity   • serotonin receptor activity   • protein binding   • signaling receptor binding   • receptor-receptor interaction   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • behavior   • multicellular organismal process   • exploration behavior   • regulation of amine metabolic process   • dopamine metabolic process   • primary metabolic process   • catechol-containing compound metabolic process   • regulation of primary metabolic process   • amine metabolic process   • catecholamine metabolic process   • phenol-containing compound metabolic process   • metabolic process   • regulation of catecholamine metabolic process   • regulation of metabolic process   • biogenic amine metabolic process   • regulation of dopamine metabolic process   • adult behavior   • regulation of tube diameter   • system process   • regulation of tube size   • regulation of system process   • circulatory system process   • regulation of blood circulation   • regulation of vasoconstriction   • vascular process in circulatory system   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • regulation of biological quality   • blood circulation   • vasoconstriction   • regulation of anatomical structure size   • cell-cell signaling   • gamma-aminobutyric acid signaling pathway   • regulation of behavior   • serotonin metabolic process   • indole-containing compound metabolic process   • cellular response to nitrogen compound   • response to dopamine   • serotonin receptor signaling pathway   • cellular response to dopamine   • response to monoamine   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to catecholamine   • cellular response to monoamine stimulus   • response to chemical   • cellular response to catecholamine stimulus   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • regulation of localization   • regulation of hormone secretion   • transport   • hormone secretion   • localization   • regulation of secretion by cell   • secretion by cell   • signal release   • regulation of signaling   • regulation of transport   • secretion   • regulation of hormone levels   • export from cell   • establishment of localization   • regulation of secretion   • regulation of cell communication   • hormone transport   • monoamine transport   • nitrogen compound transport   • organic hydroxy compound transport   • monoatomic ion transport   • serotonin secretion   • regulation of monoatomic ion transport   • regulation of serotonin secretion   • serotonin transport   • trans-synaptic signaling   • synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • behavioral defense response   • fear response   • behavioral fear response   • defense response   • response to stress   • multicellular organismal response to stress   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • synapse   • cell junction   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • adenylate cyclase-activating dopamine receptor signaling pathway   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • adenylate cyclase inhibitor activity   • cyclase regulator activity   • molecular function inhibitor activity   • cyclase inhibitor activity   • molecular function regulator activity   • enzyme inhibitor activity   • adenylate cyclase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • neuropeptide signaling pathway   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • cell surface receptor signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • response to peptide   • cellular response to cytokine stimulus   • relaxation of smooth muscle   • regulation of muscle system process   • muscle system process   • relaxation of muscle   • positive regulation of relaxation of smooth muscle   • positive regulation of relaxation of muscle   • positive regulation of multicellular organismal process   • regulation of relaxation of smooth muscle   • regulation of relaxation of muscle   • negative regulation of protein transport   • establishment of protein localization   • negative regulation of biological process   • negative regulation of transport   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • regulation of protein secretion   • negative regulation of protein secretion   • regulation of protein localization   • regulation of peptide secretion   • negative regulation of signaling   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of peptide transport   • regulation of establishment of protein localization   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • insulin secretion   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • protein localization to cell periphery   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • sperm principal piece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • nucleoplasm   • Golgi apparatus   • endomembrane system   • ciliary basal body
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeZKV
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeZKV
NameBefiradol
Synonyms
  • 4-piperidinemethanamine
  • (3-chloro-4-fluorophenyl)(4-fluoro-4-((((5-methylpyridin-2-yl)methyl)amino)methyl)piperidin-1-yl)methanone
  • (2E)-2-butenedioate
  • Befiradol
Identifier
FormulaC20 H22 Cl F2 N3 O
Molecular Weight393.858
SMILES
PubChem9865384
Formal Charge0
Total Atoms49
Total Chiral Atoms0
Total Bonds51
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08908
Sequence
>8PKM_nogp_Chain_R
SYQVITSLL LGTLIFCAV LGNACVVAA IALERSLQN VANYLIGSL 
AVTDLMVSV LVLPMAALY QVLNKWTLG QVTCDLFIA LDVLCCTSS 
IWHLCAIAL DRYWAITDP IDYVNKRTP RRAAALISL TWLIGFLIS 
IPPMLGDPD ACTISKDHG YTIYSTFGA FYIPLLLML VLYGRIFRA 
ARFRIRKTV NAEAKRKMA LARERKTVK TLGIIMGTF ILCWLPFFI 
VALVLPFCE SSCHMPTLL GAIINWLGY SNSLLNPVI YAYFNKDFQ 
NAFKKII


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7E2XAAmine5-Hydroxytryptamine5-HT1AHomo sapiens-PtdIns4PGi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2X (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens-PtdIns4P32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2YAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotoninPtdIns4PGi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Y (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotoninPtdIns4P32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2ZAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazolePtdIns4PGi1/β1/γ23.12021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Z (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazolePtdIns4P3.12021-04-14doi.org/10.1038/s41586-021-03376-8
8JSPAAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-Gi1/β1/γ23.652023-11-15doi.org/10.1038/s41586-023-06804-z
8JSP (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-3.652023-11-15doi.org/10.1038/s41586-023-06804-z
8W8BAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-Gi1/β1/γ232023-11-22doi.org/10.1038/s41586-023-06775-1
8W8B (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-32023-11-22doi.org/10.1038/s41586-023-06775-1
8FY8AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4PGi1/β1/γ12.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FY8 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4P2.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrTPtdIns4PGi1/β1/γ12.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrTPtdIns4P2.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYLAAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodonePtdIns4PGi1/β1/γ12.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYL (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodonePtdIns4P2.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYTAAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSDPtdIns4PGi1/β1/γ12.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYT (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSDPtdIns4P2.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYXAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGi1/β1/γ12.722024-05-15doi.org/10.1038/s41586-024-07403-2
8FYX (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P2.722024-05-15doi.org/10.1038/s41586-024-07403-2
8PJKAAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-Gi1/β1/γ12.42024-05-29doi.org/10.1126/sciadv.adv9267
8PJK (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-2.42024-05-29doi.org/10.1126/sciadv.adv9267
8PKMAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gi1/β1/γ12.92024-05-29doi.org/10.1126/sciadv.adv9267
8PKM (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-2.92024-05-29doi.org/10.1126/sciadv.adv9267
8JT6AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179PtdIns4PGi1/β1/γ232024-02-28doi.org/10.1016/j.cell.2024.02.034
8JT6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179PtdIns4P32024-02-28doi.org/10.1016/j.cell.2024.02.034
9GL2AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gs/β1/γ23.22025-07-02doi.org/10.1126/sciadv.adv9267
9GL2 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-3.22025-07-02doi.org/10.1126/sciadv.adv9267
9DYDAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4PGo/β1/γ22.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYD (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4P2.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGo/β1/γ22.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P2.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4PGi1/β1/γ22.742025-08-13doi.org/10.1126/sciadv.adu9851
9DYF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4P2.742025-08-13doi.org/10.1126/sciadv.adu9851
9MD1AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGz/β1/γ23.032025-08-13doi.org/10.1126/sciadv.adu9851
9MD1 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P3.032025-08-13doi.org/10.1126/sciadv.adu9851
9VJ5AAmine5-Hydroxytryptamine5-HT1AHomo sapiensGepirone-Go/β1/γ22.692025-11-12To be published
9VJ5 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensGepirone-2.692025-11-12To be published
9VJ6AAmine5-Hydroxytryptamine5-HT1AHomo sapiensF-15599-Gi3/β1/γ22.622025-11-12To be published
9VJ6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensF-15599-2.622025-11-12To be published
9VJEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Go/β1/γ22.472025-11-12To be published
9VJE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.472025-11-12To be published
9VJFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Gi3/β1/γ22.72025-11-12To be published
9VJF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.72025-11-12To be published
9VJGAAmine5-Hydroxytryptamine5-HT1AHomo sapiens8-OH-DPAT-chim(NtGi2-Gz)/β1/γ22.672025-11-12To be published
9VJG (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens8-OH-DPAT-2.672025-11-12To be published
9VMYAAmine5-Hydroxytryptamine5-HT1AHomo sapiensTMU4142-Go/β1/γ22.862025-11-12To be published
9VMY (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensTMU4142-2.862025-11-12To be published
9VNFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensPindolol-Go/β1/γ22.742025-11-12To be published
9VNF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensPindolol-2.742025-11-12To be published
9KVGAAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4PGi1/β1/γ22.632025-12-03To be published
9KVG (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4P2.632025-12-03To be published
9KVHAAmine5-Hydroxytryptamine5-HT1AHomo sapiensCinobufoteninePtdIns4PGi1/β1/γ22.592025-12-03To be published
9KVH (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensCinobufoteninePtdIns4P2.592025-12-03To be published
9KVIAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBufoteninPtdIns4PGi1/β1/γ22.542025-12-03To be published
9KVI (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBufoteninPtdIns4P2.542025-12-03To be published
9HYIAAmine5-Hydroxytryptamine5-HT1AHomo sapiensDP81-Gi1/β1/γ22.32026-01-21To be published
9HYI (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensDP81-2.32026-01-21To be published




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