Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.661671210
2R:R:L67 4.086538
3R:R:N72 5.874539
4R:R:D82 5.572529
5R:R:L90 3.552508
6R:R:V98 3.7725456
7R:R:W102 8.26669
8R:R:C109 5.0475469
9R:R:D116 9.045418
10R:R:S122 8.0775448
11R:R:I124 5.925418
12R:R:H126 8.228548
13R:R:Y135 8.2875409
14R:R:R148 10.4975408
15R:R:W161 8.21549
16R:R:I189 3.87406
17R:R:Y195 8.4275408
18R:R:F204 8.975408
19R:R:Y205 8.5125477
20R:R:M211 4.1275429
21R:R:Y215 5.49833629
22R:R:F219 5.9175406
23R:R:F354 5.07409
24R:R:W358 7.71167618
25R:R:L359 4.84407
26R:R:F361 6.824518
27R:R:F362 12.6725417
28R:R:W387 6.9575408
29R:R:Y390 6.254518
30R:R:N396 7.8375429
31R:R:Y400 5.286529
32R:R:Y402 4.178506
33R:R:D406 6.925437
34R:R:F407 6.81286738
35R:R:F411 4.625408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:I189 1004.55YesYes006
2R:R:I113 R:R:I189 89.06652.94NoYes076
3R:R:C109 R:R:I113 55.41733.27YesNo697
4R:R:C109 R:R:W102 32.92796.53YesYes699
5R:R:L104 R:R:W102 44.49087.97NoYes079
6R:R:L104 R:R:L95 37.80062.77NoNo076
7R:R:L95 R:R:L99 27.5464.15NoNo565
8R:R:L99 R:R:V98 24.25042.98NoYes556
9R:R:Q36 R:R:V98 13.91095.73NoYes546
10R:R:C187 R:R:I113 32.53893.27NoNo697
11R:R:C187 R:R:W102 31.039616.98NoYes699
12L:L:?1 R:R:Y390 30.26173.74YesYes108
13R:R:W387 R:R:Y390 11.78228.68YesYes088
14R:R:L90 R:R:Y390 15.81335.86YesYes088
15R:R:L90 R:R:S86 10.10613YesNo088
16L:L:?1 R:R:W358 58.684611.81YesYes108
17R:R:N392 R:R:W358 73.46536.78NoYes098
18R:R:N392 R:R:N396 70.558712.26NoYes099
19R:R:D82 R:R:N396 50.91236.73YesYes299
20R:R:D82 R:R:N54 64.62525.39YesNo099
21R:R:N54 R:R:P397 57.02266.52NoNo099
22R:R:P397 R:R:Y402 55.45972.78NoYes096
23R:R:V57 R:R:Y402 13.02695.05NoYes096
24R:R:F411 R:R:Y402 33.17546.19YesYes086
25R:R:F407 R:R:F411 22.56725.36YesYes088
26L:L:?1 R:R:I124 66.1814.55YesYes108
27R:R:F354 R:R:I124 70.82047.54YesYes098
28R:R:F354 R:R:M211 79.83733.73YesYes099
29R:R:C128 R:R:M211 66.44984.86NoYes079
30R:R:C128 R:R:L210 64.78783.17NoNo077
31R:R:L210 R:R:L214 63.11175.54NoNo077
32R:R:L132 R:R:L214 40.03544.15NoNo067
33R:R:L132 R:R:W136 38.161211.39NoNo065
34R:R:R152 R:R:W136 36.26597NoNo075
35R:R:R148 R:R:R152 30.65064.26YesNo087
36R:R:R148 R:R:V70 16.739715.69YesNo087
37R:R:P150 R:R:V70 12.63793.53NoNo057
38L:L:?1 R:R:V117 54.07359.51YesNo008
39R:R:S168 R:R:V117 43.09764.85NoNo088
40R:R:L118 R:R:S168 37.89963NoNo068
41R:R:L118 R:R:W161 34.36355.69NoYes069
42R:R:L78 R:R:Y400 26.82463.52NoYes299
43R:R:L127 R:R:N396 10.08495.49NoYes089
44R:R:M84 R:R:W161 103.49NoYes079
45R:R:F112 R:R:W102 10.22637.02NoYes069
46R:R:C109 R:R:D110 24.94343.11YesNo097
47R:R:D110 R:R:R181 23.25324.76NoNo074
48R:R:I167 R:R:V117 12.12873.07NoNo088
49L:L:?1 R:R:T121 14.46965.88YesNo008
50R:R:I124 R:R:P207 10.50923.39YesNo089
51R:R:M211 R:R:Y215 44.56153.59YesYes299
52R:R:R134 R:R:Y215 24.73837.2NoYes299
53R:R:L214 R:R:Y135 24.77374.69NoYes079
54R:R:T139 R:R:Y135 12.637912.48NoYes089
55R:R:D140 R:R:T139 10.56584.34NoNo078
56R:R:I167 R:R:Y198 18.91096.04NoNo085
57R:R:I167 R:R:T121 11.0754.56NoNo088
58R:R:I189 R:R:Y195 15.79923.63YesYes068
59R:R:P171 R:R:Y195 10.579912.52NoYes078
60L:L:?1 R:R:S199 14.27167.19YesNo008
61R:R:S199 R:R:Y195 12.786415.26NoYes088
62R:R:D192 R:R:Y195 14.08062.3NoYes068
63R:R:R176 R:R:R181 21.548810.66NoNo064
64R:R:D180 R:R:R176 18.09768.34NoNo046
65R:R:D180 R:R:T188 11.02555.78NoNo045
66L:L:?1 R:R:F362 19.936413.6YesYes107
67R:R:F204 R:R:F362 31.329619.29YesYes087
68R:R:F204 R:R:Y205 26.69025.16YesYes087
69R:R:F201 R:R:Y205 21.152814.44NoYes757
70R:R:F201 R:R:I197 19.44133.77NoNo057
71R:R:F370 R:R:I197 17.56015.02NoNo057
72R:R:F370 R:R:T196 11.83173.89NoNo057
73R:R:L347 R:R:Y215 24.83734.69NoYes089
74R:R:F219 R:R:L347 22.81473.65YesNo068
75R:R:F219 R:R:T343 12.60967.78YesNo068
76R:R:I399 R:R:Y400 15.5872.42NoYes089
77L:L:?1 R:R:F361 12.65919.72YesYes108
78R:R:F361 R:R:N386 20.294.83YesNo087
79R:R:I385 R:R:N386 17.43282.83NoNo067
80R:R:L166 R:R:Y198 15.15561.17NoNo055
81R:R:L162 R:R:L166 11.38611.38NoNo055
82R:R:Q36 R:R:Y35 10.47381.13NoNo044
83R:R:R134 R:R:Y400 21.98736.17NoYes299
84R:R:F204 R:R:F354 14.32115.36YesYes089
85R:R:D82 R:R:L78 18.09765.43YesNo299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D116 19.49 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V117 9.51 1 Yes No 0 8 0 1
L:L:?1 R:R:C120 10.13 1 Yes No 0 7 0 1
L:L:?1 R:R:T121 5.88 1 Yes No 0 8 0 1
L:L:?1 R:R:I124 4.55 1 Yes Yes 0 8 0 1
L:L:?1 R:R:I189 4.55 1 Yes Yes 0 6 0 1
L:L:?1 R:R:S199 7.19 1 Yes No 0 8 0 1
L:L:?1 R:R:A203 3.77 1 Yes No 0 8 0 1
L:L:?1 R:R:W358 11.81 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F361 9.72 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F362 13.6 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y390 3.74 1 Yes Yes 0 8 0 1
R:R:L90 R:R:V85 2.98 0 Yes No 8 8 2 2
R:R:C120 R:R:V85 3.42 1 No No 7 8 1 2
R:R:D116 R:R:V89 4.38 1 Yes No 8 8 1 2
R:R:V89 R:R:Y390 3.79 1 No Yes 8 8 2 1
R:R:L90 R:R:Y390 5.86 0 Yes Yes 8 8 2 1
R:R:I113 R:R:I189 2.94 6 No Yes 7 6 2 1
R:R:C120 R:R:D116 3.11 1 No Yes 7 8 1 1
R:R:D116 R:R:Y390 9.2 1 Yes Yes 8 8 1 1
R:R:I167 R:R:V117 3.07 0 No No 8 8 2 1
R:R:S168 R:R:V117 4.85 0 No No 8 8 2 1
R:R:G164 R:R:T121 3.64 0 No No 8 8 2 1
R:R:I167 R:R:T121 4.56 0 No No 8 8 2 1
R:R:I124 R:R:P207 3.39 1 Yes No 8 9 1 2
R:R:F354 R:R:I124 7.54 0 Yes Yes 9 8 2 1
R:R:I124 R:R:W358 8.22 1 Yes Yes 8 8 1 1
R:R:I189 R:R:K191 4.36 0 Yes No 6 5 1 2
R:R:I189 R:R:Y195 3.63 0 Yes Yes 6 8 1 2
R:R:S199 R:R:Y195 15.26 0 No Yes 8 8 1 2
R:R:F204 R:R:F354 5.36 0 Yes Yes 8 9 2 2
R:R:F204 R:R:F362 19.29 0 Yes Yes 8 7 2 1
R:R:F361 R:R:W358 5.01 1 Yes Yes 8 8 1 1
R:R:F362 R:R:W358 6.01 1 Yes Yes 7 8 1 1
R:R:G389 R:R:W358 8.44 0 No Yes 8 8 2 1
R:R:N392 R:R:W358 6.78 0 No Yes 9 8 2 1
R:R:F361 R:R:F362 11.79 1 Yes Yes 8 7 1 1
R:R:F361 R:R:N386 4.83 1 Yes No 8 7 1 2
R:R:W387 R:R:Y390 8.68 0 Yes Yes 8 8 2 1
R:R:A365 R:R:F361 2.77 0 No Yes 8 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9DYD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.94
Number of Linked Nodes 265
Number of Links 291
Number of Hubs 35
Number of Links mediated by Hubs 133
Number of Communities 8
Number of Nodes involved in Communities 49
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 86
Number Of Links MetaPath 85
Number of Shortest Paths 40785
Length Of Smallest Path 3
Average Path Length 12.4176
Length of Longest Path 28
Minimum Path Strength 1.17
Average Path Strength 5.90827
Maximum Path Strength 17.46
Minimum Path Correlation 0.7
Average Path Correlation 0.938838
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5.88235
Average % Of Corr. Nodes 60.0162
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.5077
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • adenylate cyclase regulator activity   • mu-type opioid receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • opioid receptor binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • peptide hormone receptor binding   • corticotropin-releasing hormone receptor binding   • corticotropin-releasing hormone receptor 1 binding   • hormone receptor binding   • neuropeptide receptor binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cation binding   • metal ion binding   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • heart process   • multicellular organismal process   • system process   • regulation of heart contraction   • regulation of system process   • circulatory system process   • regulation of blood circulation   • regulation of multicellular organismal process   • heart contraction   • blood circulation   • behavior   • locomotory behavior   • transport   • secretion   • export from cell   • membrane docking   • establishment of localization   • vesicle-mediated transport   • localization   • organelle localization by membrane tethering   • secretion by cell   • exocytosis   • organelle localization   • vesicle docking   • exocytic process   • vesicle docking involved in exocytosis   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • negative regulation of protein transport   • regulation of localization   • establishment of protein localization   • nitrogen compound transport   • negative regulation of biological process   • negative regulation of transport   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of biological quality   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • regulation of protein secretion   • regulation of secretion   • negative regulation of protein secretion   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • negative regulation of signaling   • hormone secretion   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • regulation of secretion by cell   • amide transport   • signal release   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of signaling   • regulation of transport   • regulation of peptide transport   • regulation of establishment of protein localization   • cell-cell signaling   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • hormone transport   • regulation of cell communication   • insulin secretion   • trans-synaptic signaling   • modulation of chemical synaptic transmission   • chemical synaptic transmission   • synaptic signaling   • regulation of trans-synaptic signaling   • anterograde trans-synaptic signaling   • postsynaptic modulation of chemical synaptic transmission   • muscle contraction   • muscle system process   • cell periphery   • postsynapse   • cellular anatomical structure   • postsynaptic membrane   • synapse   • cell junction   • membrane   • plasma membrane   • plasma membrane region   • synaptic membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex
Gene OntologyCellular Component• cell periphery   • postsynapse   • cellular anatomical structure   • postsynaptic membrane   • synapse   • cell junction   • membrane   • plasma membrane   • plasma membrane region   • synaptic membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • parallel fiber to Purkinje cell synapse   • excitatory synapse   • presynapse   • presynaptic membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • intracellular anatomical structure   • cytoplasm   • GABA-ergic synapse   • glutamatergic synapse   • cell body   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • G-protein beta-subunit binding   • fibroblast proliferation   • cation binding   • ion binding   • serotonin binding   • amine binding   • heterocyclic compound binding   • small molecule binding   • G protein-coupled amine receptor activity   • G protein-coupled serotonin receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Gi/o-coupled serotonin receptor activity   • neurotransmitter receptor activity   • serotonin receptor activity   • signaling receptor binding   • receptor-receptor interaction   • tetrapyrrole binding   • heme binding   • electron transfer activity   • transition metal ion binding   • iron ion binding   • metal ion binding   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • behavior   • exploration behavior   • regulation of amine metabolic process   • dopamine metabolic process   • primary metabolic process   • catechol-containing compound metabolic process   • regulation of primary metabolic process   • amine metabolic process   • catecholamine metabolic process   • phenol-containing compound metabolic process   • metabolic process   • regulation of catecholamine metabolic process   • regulation of metabolic process   • biogenic amine metabolic process   • regulation of dopamine metabolic process   • regulation of tube diameter   • regulation of tube size   • regulation of system process   • circulatory system process   • regulation of blood circulation   • regulation of vasoconstriction   • vascular process in circulatory system   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • regulation of biological quality   • blood circulation   • vasoconstriction   • regulation of anatomical structure size   • gamma-aminobutyric acid signaling pathway   • regulation of behavior   • serotonin metabolic process   • indole-containing compound metabolic process   • serotonin receptor signaling pathway   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • regulation of localization   • regulation of hormone secretion   • transport   • hormone secretion   • localization   • regulation of secretion by cell   • secretion by cell   • signal release   • regulation of signaling   • regulation of transport   • secretion   • regulation of hormone levels   • export from cell   • establishment of localization   • regulation of secretion   • regulation of cell communication   • hormone transport   • monoamine transport   • nitrogen compound transport   • organic hydroxy compound transport   • monoatomic ion transport   • serotonin secretion   • regulation of monoatomic ion transport   • regulation of serotonin secretion   • serotonin transport   • trans-synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • behavioral defense response   • fear response   • behavioral fear response   • defense response   • response to stress   • multicellular organismal response to stress   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • electron transport chain   • generation of precursor metabolites and energy   • periplasmic space
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1B
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1B
Name1-deoxy-alpha-L-xylulofuranose-1,2-borate
Synonyms
Identifier
FormulaC5 H10 B O6
Molecular Weight176.94
SMILES
PubChem118797262
Formal Charge-1
Total Atoms22
Total Chiral Atoms3
Total Bonds23
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08908
Sequence
>9DYD_nogp_Chain_R
YQVITSLLL GTLIFCAVL GNACVVAAI ALERSLQNV ANYLIGSLA 
VTDLMVSVL VLPMAALYQ VLNKWTLGQ VTCDLFIAL DVLCCTSSI 
HLCAIALDR YWAITDPID YVNKRTPRR AAALISLTW LIGFLISIP 
PMLGWRTPE DRSDPDACT ISKDHGYTI YSTFGAFYI PLLLMLVLY 
GRIFRAARF RIRKKNERN AEAKRKMAL ARERKTVKT LGIIMGTFI 
LCWLPFFIV ALVLPFCES SCHMPTLLG AIINWLGYS NSLLNPVIY 
AYFNKDFQN AFKKIIW


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7E2XAAmine5-Hydroxytryptamine5-HT1AHomo sapiens--Gi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2X (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens--32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2YAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotonin-Gi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Y (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotonin-32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2ZAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazole-Gi1/β1/γ23.12021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Z (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazole-3.12021-04-14doi.org/10.1038/s41586-021-03376-8
8W8BAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-Gi1/β1/γ232023-11-22doi.org/10.1038/s41586-023-06775-1
8W8B (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-32023-11-22doi.org/10.1038/s41586-023-06775-1
8JSPAAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-Gi1/β1/γ23.652023-11-15doi.org/10.1038/s41586-023-06804-z
8JSP (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-3.652023-11-15doi.org/10.1038/s41586-023-06804-z
8FY8AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMT-Gi1/β1/γ12.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FY8 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMT-2.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrT-Gi1/β1/γ12.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrT-2.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYLAAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodone-Gi1/β1/γ12.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYL (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodone-2.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYTAAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSD-Gi1/β1/γ12.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYT (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSD-2.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYXAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Gi1/β1/γ12.722024-05-15doi.org/10.1038/s41586-024-07403-2
8FYX (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.722024-05-15doi.org/10.1038/s41586-024-07403-2
8JT6AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179-Gi1/β1/γ232024-02-28doi.org/10.1016/j.cell.2024.02.034
8JT6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179-32024-02-28doi.org/10.1016/j.cell.2024.02.034
8PJKAAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-Gi1/β1/γ12.42024-05-29doi.org/10.1126/sciadv.adv9267
8PJK (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-2.42024-05-29doi.org/10.1126/sciadv.adv9267
8PKMAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gi1/β1/γ12.92024-05-29doi.org/10.1126/sciadv.adv9267
8PKM (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-2.92024-05-29doi.org/10.1126/sciadv.adv9267
9GL2AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gs/β1/γ23.22025-07-02doi.org/10.1126/sciadv.adv9267
9GL2 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-3.22025-07-02doi.org/10.1126/sciadv.adv9267
9DYFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapine-Gi1/β1/γ22.742025-08-13doi.org/10.1126/sciadv.adu9851
9DYF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapine-2.742025-08-13doi.org/10.1126/sciadv.adu9851
9DYDAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapine-Go/β1/γ22.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYD (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapine-2.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Go/β1/γ22.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.92025-08-13doi.org/10.1126/sciadv.adu9851
9MD1AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Gz/β1/γ23.032025-08-13doi.org/10.1126/sciadv.adu9851
9MD1 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-3.032025-08-13doi.org/10.1126/sciadv.adu9851




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Download 9DYD_nogp.zip



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