Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.85778910
2R:R:V57 4.05429
3R:R:E64 5.1775447
4R:R:L67 4.368528
5R:R:V70 7.1725457
6R:R:N72 6.2825429
7R:R:L78 7.12619
8R:R:D82 6.652519
9R:R:W102 9.11619
10R:R:D116 11.1775418
11R:R:W125 11.8925467
12R:R:H126 7.92571718
13R:R:L127 6.7625418
14R:R:R134 6.4975419
15R:R:Y135 8.37509
16R:R:R148 11.8325458
17R:R:W161 8.992519
18R:R:P170 6.038538
19R:R:W175 5.9025436
20R:R:Y195 7.02333638
21R:R:Y198 5.8175435
22R:R:F204 11.026518
23R:R:L208 5.51417
24R:R:Y215 5.87833609
25R:R:F219 3.815406
26R:R:F354 5.57619
27R:R:I355 4.72407
28R:R:W358 7.76718
29R:R:L359 6.5725407
30R:R:F361 9.254518
31R:R:F362 11.292517
32R:R:M377 4.46404
33R:R:W387 7.616518
34R:R:Y390 8.235618
35R:R:N396 10.5775419
36R:R:I399 5.38408
37R:R:Y400 6.205619
38R:R:Y402 5.86506
39R:R:F407 6.87143728
40W:W:?1 8.195451110
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y390 25.107110.73YesYes108
2R:R:W387 R:R:Y390 22.89458.68YesYes188
3R:R:L43 R:R:W387 17.028717.08NoYes078
4R:R:L43 R:R:T39 14.64762.95NoNo075
5L:L:?1 R:R:C120 30.27095.19YesNo107
6R:R:C120 R:R:W358 35.83145.22NoYes178
7R:R:F354 R:R:W358 74.70544.01YesYes198
8R:R:F354 R:R:L127 51.87934.87YesYes198
9R:R:L127 R:R:Y400 40.78367.03YesYes189
10R:R:R134 R:R:Y400 37.2386.17YesYes199
11R:R:R134 W:W:?1 38.85754.07YesYes190
12L:L:?1 R:R:F361 30.434416.72YesYes108
13R:R:F361 R:R:W358 30.71448.02YesYes188
14L:L:?1 R:R:F362 67.34047.96YesYes107
15R:R:F362 R:R:W358 30.66769.02YesYes178
16R:R:F204 R:R:F362 37.21920.36YesYes187
17R:R:F204 R:R:F354 26.12469.65YesYes189
18R:R:Y402 W:W:?1 11.26547.85YesYes060
19R:R:N392 R:R:W358 20.28549.04NoYes098
20R:R:N392 R:R:N396 19.910312.26NoYes099
21R:R:D82 R:R:N396 11.57848.08YesYes199
22R:R:N404 W:W:?1 17.40887.35NoYes090
23R:R:F407 R:R:N404 16.410310.87YesNo089
24R:R:F354 R:R:M211 49.23086.22YesNo099
25R:R:M211 R:R:M351 43.4085.78NoNo098
26R:R:M351 R:R:Y215 54.47833.59NoYes089
27R:R:I218 R:R:Y215 45.69913.63NoYes099
28R:R:I218 R:R:Y135 44.47123.63NoYes099
29R:R:W136 R:R:Y135 32.01843.86NoYes059
30R:R:R152 R:R:W136 29.56646NoNo075
31R:R:R148 R:R:R152 19.5015.33YesNo087
32R:R:R148 R:R:V70 10.430315.69YesYes587
33R:R:F204 R:R:L208 11.74578.53YesYes187
34R:R:L208 R:R:L212 12.1554.15YesNo076
35R:R:L212 R:R:M351 11.97894.24NoNo068
36R:R:L127 R:R:L78 10.48235.54YesYes189
37R:R:H126 R:R:L78 18.11857.71YesYes189
38R:R:D82 R:R:S393 12.14614.42YesNo099
39L:L:?1 R:R:W102 1005.21YesYes109
40R:R:C109 R:R:W102 48.25389.14NoYes199
41R:R:C187 R:R:W102 48.284216.98NoYes199
42R:R:C109 R:R:I113 47.38833.27NoNo197
43R:R:I113 R:R:I189 93.00384.42NoNo076
44R:R:I189 R:R:Y195 65.73743.63NoYes068
45R:R:S190 R:R:Y195 15.33312.54NoYes068
46R:R:R176 R:R:S190 13.42477.91NoNo066
47R:R:C187 R:R:I113 47.41873.27NoNo197
48R:R:P170 R:R:Y195 24.60914.17YesYes388
49R:R:P170 R:R:Y198 17.08328.34YesYes385
50R:R:I167 R:R:Y198 15.15836.04NoYes085
51R:R:I167 R:R:T121 11.35547.6NoNo088
52R:R:W175 R:R:Y195 20.82147.72YesYes368
53R:R:W175 R:R:Y198 17.05027.72YesYes365
54R:R:L166 R:R:Y198 15.22541.17NoYes055
55R:R:L162 R:R:L166 11.42265.54NoNo055
56R:R:I189 R:R:K191 26.73424.36NoNo065
57R:R:K191 R:R:P369 22.94525.02NoNo057
58R:R:P369 R:R:T196 21.04712.24NoNo077
59R:R:F370 R:R:T196 19.14623.89NoNo057
60R:R:F370 R:R:H193 15.336918.1NoNo054
61R:R:G194 R:R:H193 11.51761.59NoNo054
62R:R:L347 R:R:Y215 16.81834.69NoYes089
63R:R:F219 R:R:L347 12.95213.65YesNo068
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y96 9.2 1 Yes No 0 6 0 1
L:L:?1 R:R:W102 5.21 1 Yes Yes 0 9 0 1
L:L:?1 R:R:D116 16.86 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V117 8.77 1 Yes No 0 8 0 1
L:L:?1 R:R:C120 5.19 1 Yes No 0 7 0 1
L:L:?1 R:R:F361 16.72 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F362 7.96 1 Yes Yes 0 7 0 1
L:L:?1 R:R:N386 8.08 1 Yes No 0 7 0 1
L:L:?1 R:R:Y390 10.73 1 Yes Yes 0 8 0 1
R:R:D116 R:R:V89 11.69 1 Yes No 8 8 1 2
R:R:V89 R:R:Y390 3.79 1 No Yes 8 8 2 1
R:R:L90 R:R:W387 4.56 1 No Yes 8 8 2 2
R:R:L90 R:R:Y390 9.38 1 No Yes 8 8 2 1
R:R:A93 R:R:Y390 5.34 0 No Yes 7 8 2 1
R:R:W102 R:R:Y96 5.79 1 Yes No 9 6 1 1
R:R:L104 R:R:W102 12.53 0 No Yes 7 9 2 1
R:R:C109 R:R:W102 9.14 1 No Yes 9 9 2 1
R:R:F112 R:R:W102 5.01 0 No Yes 6 9 2 1
R:R:C187 R:R:W102 16.98 1 No Yes 9 9 2 1
R:R:C109 R:R:C187 7.28 1 No No 9 9 2 2
R:R:C120 R:R:D116 4.67 1 No Yes 7 8 1 1
R:R:D116 R:R:Y390 11.49 1 Yes Yes 8 8 1 1
R:R:C120 R:R:W358 5.22 1 No Yes 7 8 1 2
R:R:F362 R:R:T200 5.19 1 Yes No 7 7 1 2
R:R:F204 R:R:F362 20.36 1 Yes Yes 8 7 2 1
R:R:F361 R:R:W358 8.02 1 Yes Yes 8 8 1 2
R:R:F362 R:R:W358 9.02 1 Yes Yes 7 8 1 2
R:R:F361 R:R:F362 13.93 1 Yes Yes 8 7 1 1
R:R:F361 R:R:N386 4.83 1 Yes No 8 7 1 1
R:R:W387 R:R:Y390 8.68 1 Yes Yes 8 8 2 1
R:R:S168 R:R:V117 3.23 0 No No 8 8 2 1
R:R:A365 R:R:F361 2.77 0 No Yes 8 8 2 1
R:R:A186 R:R:Y96 1.33 0 No No 4 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:L52 W:W:?1 3.71 0 No Yes 4 0 1 0
R:R:G53 R:R:Y402 4.35 0 No Yes 9 6 2 1
R:R:C56 R:R:Y402 4.03 0 No Yes 8 6 2 1
R:R:V57 R:R:Y402 3.79 2 Yes Yes 9 6 2 1
R:R:F407 R:R:V57 3.93 2 Yes Yes 8 9 2 2
R:R:I130 R:R:R134 7.52 1 No Yes 9 9 2 1
R:R:I130 R:R:Y400 7.25 1 No Yes 9 9 2 2
R:R:R134 R:R:Y215 8.23 1 Yes Yes 9 9 1 2
R:R:R134 R:R:Y400 6.17 1 Yes Yes 9 9 1 2
R:R:R134 W:W:?1 4.07 1 Yes Yes 9 0 1 0
R:R:K345 W:W:?1 14.16 0 No Yes 7 0 1 0
R:R:T346 W:W:?1 10.85 0 No Yes 8 0 1 0
R:R:I349 R:R:I399 4.42 0 No Yes 7 8 1 2
R:R:I349 W:W:?1 5.73 0 No Yes 7 0 1 0
R:R:F403 R:R:V398 3.93 1 No No 8 6 1 1
R:R:V398 W:W:?1 4.99 1 No Yes 6 0 1 0
R:R:I399 R:R:Y400 7.25 0 Yes Yes 8 9 2 2
R:R:F403 R:R:I399 3.77 1 No Yes 8 8 1 2
R:R:F411 R:R:Y402 9.28 0 No Yes 8 6 2 1
R:R:Y402 W:W:?1 7.85 0 Yes Yes 6 0 1 0
R:R:F403 W:W:?1 27.72 1 No Yes 8 0 1 0
R:R:F407 R:R:N404 10.87 2 Yes No 8 9 2 1
R:R:N404 W:W:?1 7.35 0 No Yes 9 0 1 0
R:R:K405 R:R:Q408 9.49 0 No No 6 9 2 1
R:R:F407 R:R:F411 5.36 2 Yes No 8 8 2 2
R:R:K342 W:W:?1 2.83 0 No Yes 8 0 1 0
R:R:F48 R:R:L52 2.44 0 No No 4 4 2 1
R:R:Q408 W:W:?1 0.89 0 No Yes 9 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8FYX_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.53
Number of Linked Nodes 270
Number of Links 313
Number of Hubs 40
Number of Links mediated by Hubs 161
Number of Communities 6
Number of Nodes involved in Communities 58
Number of Links involved in Communities 85
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 135132
Length Of Smallest Path 3
Average Path Length 15.4675
Length of Longest Path 31
Minimum Path Strength 1.225
Average Path Strength 6.53693
Maximum Path Strength 20.94
Minimum Path Correlation 0.7
Average Path Correlation 0.934999
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 47.5516
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.2123
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• cation binding   • binding   • ion binding   • serotonin binding   • amine binding   • heterocyclic compound binding   • small molecule binding   • G protein-coupled amine receptor activity   • G protein-coupled serotonin receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Gi/o-coupled serotonin receptor activity   • neurotransmitter receptor activity   • serotonin receptor activity   • protein binding   • signaling receptor binding   • receptor-receptor interaction   • tetrapyrrole binding   • heme binding   • electron transfer activity   • transition metal ion binding   • iron ion binding   • metal ion binding   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • behavior   • multicellular organismal process   • exploration behavior   • regulation of amine metabolic process   • dopamine metabolic process   • primary metabolic process   • catechol-containing compound metabolic process   • regulation of primary metabolic process   • amine metabolic process   • catecholamine metabolic process   • phenol-containing compound metabolic process   • metabolic process   • regulation of catecholamine metabolic process   • regulation of metabolic process   • biogenic amine metabolic process   • regulation of dopamine metabolic process   • adult behavior   • regulation of tube diameter   • system process   • regulation of tube size   • regulation of system process   • circulatory system process   • regulation of blood circulation   • regulation of vasoconstriction   • vascular process in circulatory system   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • regulation of biological quality   • blood circulation   • vasoconstriction   • regulation of anatomical structure size   • cell-cell signaling   • gamma-aminobutyric acid signaling pathway   • regulation of behavior   • serotonin metabolic process   • indole-containing compound metabolic process   • cellular response to nitrogen compound   • response to dopamine   • serotonin receptor signaling pathway   • cellular response to dopamine   • response to monoamine   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to catecholamine   • cellular response to monoamine stimulus   • response to chemical   • cellular response to catecholamine stimulus   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • regulation of localization   • regulation of hormone secretion   • transport   • hormone secretion   • localization   • regulation of secretion by cell   • secretion by cell   • signal release   • regulation of signaling   • regulation of transport   • secretion   • regulation of hormone levels   • export from cell   • establishment of localization   • regulation of secretion   • regulation of cell communication   • hormone transport   • monoamine transport   • nitrogen compound transport   • organic hydroxy compound transport   • monoatomic ion transport   • serotonin secretion   • regulation of monoatomic ion transport   • regulation of serotonin secretion   • serotonin transport   • trans-synaptic signaling   • synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • behavioral defense response   • fear response   • behavioral fear response   • defense response   • response to stress   • multicellular organismal response to stress   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • electron transport chain   • generation of precursor metabolites and energy   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • synapse   • cell junction   • periplasmic space   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • adenylate cyclase-activating dopamine receptor signaling pathway   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • adenylate cyclase inhibitor activity   • cyclase regulator activity   • molecular function inhibitor activity   • cyclase inhibitor activity   • molecular function regulator activity   • enzyme inhibitor activity   • adenylate cyclase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • neuropeptide signaling pathway   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • cell surface receptor signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • response to peptide   • cellular response to cytokine stimulus   • relaxation of smooth muscle   • regulation of muscle system process   • muscle system process   • relaxation of muscle   • positive regulation of relaxation of smooth muscle   • positive regulation of relaxation of muscle   • positive regulation of multicellular organismal process   • regulation of relaxation of smooth muscle   • regulation of relaxation of muscle   • negative regulation of protein transport   • establishment of protein localization   • negative regulation of biological process   • negative regulation of transport   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • regulation of protein secretion   • negative regulation of protein secretion   • regulation of protein localization   • regulation of peptide secretion   • negative regulation of signaling   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of peptide transport   • regulation of establishment of protein localization   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • insulin secretion   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • protein localization to cell periphery   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • sperm principal piece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • nucleoplasm   • Golgi apparatus   • endomembrane system   • ciliary basal body
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeYLX
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeYLX
NameBuspirone
SynonymsBuspironum
Identifier
FormulaC21 H31 N5 O2
Molecular Weight385.503
SMILES
PubChem2477
Formal Charge0
Total Atoms59
Total Chiral Atoms0
Total Bonds62
Total Aromatic Bonds6

CodeJ40
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ40
Name[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate
Synonyms
Identifier
FormulaC39 H68 O16 P2
Molecular Weight854.895
SMILES
PubChem
Formal Charge0
Total Atoms125
Total Chiral Atoms5
Total Bonds125
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08908
Sequence
>8FYX_nogp_Chain_R
YQVITSLLL GTLIFCAVL GNACVVAAI ALERSLQNV ANYLIGSLA 
VTDLMVSVL VLPMAALYQ VLNKWTLGQ VTCDLFIAL DVLCCTSSI 
WHLCAIALD RYWAITDPI DYVNKRTPR RAAALISLT WLIGFLISI 
PPMLGWRTP EDRSDPDAC TISKDHGYT IYSTFGAFY IPLLLMLVL 
YGRIFRAAR FRIRKKNER NAEAKRKMA LARERKTVK TLGIIMGTF 
ILCWLPFFI VALVLPFCE SSCHMPTLL GAIINWLGY SNSLLNPVI 
YAYFNKDFQ NAFKKII


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7E2XAAmine5-Hydroxytryptamine5-HT1AHomo sapiens-PtdIns4PGi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2X (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens-PtdIns4P32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2YAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotoninPtdIns4PGi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Y (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotoninPtdIns4P32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2ZAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazolePtdIns4PGi1/β1/γ23.12021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Z (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazolePtdIns4P3.12021-04-14doi.org/10.1038/s41586-021-03376-8
8JSPAAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-Gi1/β1/γ23.652023-11-15doi.org/10.1038/s41586-023-06804-z
8JSP (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-3.652023-11-15doi.org/10.1038/s41586-023-06804-z
8W8BAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-Gi1/β1/γ232023-11-22doi.org/10.1038/s41586-023-06775-1
8W8B (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-32023-11-22doi.org/10.1038/s41586-023-06775-1
8FY8AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4PGi1/β1/γ12.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FY8 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4P2.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrTPtdIns4PGi1/β1/γ12.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrTPtdIns4P2.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYLAAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodonePtdIns4PGi1/β1/γ12.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYL (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodonePtdIns4P2.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYTAAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSDPtdIns4PGi1/β1/γ12.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYT (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSDPtdIns4P2.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYXAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGi1/β1/γ12.722024-05-15doi.org/10.1038/s41586-024-07403-2
8FYX (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P2.722024-05-15doi.org/10.1038/s41586-024-07403-2
8PJKAAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-Gi1/β1/γ12.42024-05-29doi.org/10.1126/sciadv.adv9267
8PJK (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-2.42024-05-29doi.org/10.1126/sciadv.adv9267
8PKMAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gi1/β1/γ12.92024-05-29doi.org/10.1126/sciadv.adv9267
8PKM (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-2.92024-05-29doi.org/10.1126/sciadv.adv9267
8JT6AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179PtdIns4PGi1/β1/γ232024-02-28doi.org/10.1016/j.cell.2024.02.034
8JT6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179PtdIns4P32024-02-28doi.org/10.1016/j.cell.2024.02.034
9GL2AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gs/β1/γ23.22025-07-02doi.org/10.1126/sciadv.adv9267
9GL2 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-3.22025-07-02doi.org/10.1126/sciadv.adv9267
9DYDAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4PGo/β1/γ22.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYD (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4P2.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGo/β1/γ22.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P2.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4PGi1/β1/γ22.742025-08-13doi.org/10.1126/sciadv.adu9851
9DYF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4P2.742025-08-13doi.org/10.1126/sciadv.adu9851
9MD1AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGz/β1/γ23.032025-08-13doi.org/10.1126/sciadv.adu9851
9MD1 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P3.032025-08-13doi.org/10.1126/sciadv.adu9851
9VJ5AAmine5-Hydroxytryptamine5-HT1AHomo sapiensGepirone-Go/β1/γ22.692025-11-12To be published
9VJ5 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensGepirone-2.692025-11-12To be published
9VJ6AAmine5-Hydroxytryptamine5-HT1AHomo sapiensF-15599-Gi3/β1/γ22.622025-11-12To be published
9VJ6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensF-15599-2.622025-11-12To be published
9VJEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Go/β1/γ22.472025-11-12To be published
9VJE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.472025-11-12To be published
9VJFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Gi3/β1/γ22.72025-11-12To be published
9VJF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.72025-11-12To be published
9VJGAAmine5-Hydroxytryptamine5-HT1AHomo sapiens8-OH-DPAT-chim(NtGi2-Gz)/β1/γ22.672025-11-12To be published
9VJG (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens8-OH-DPAT-2.672025-11-12To be published
9VMYAAmine5-Hydroxytryptamine5-HT1AHomo sapiensTMU4142-Go/β1/γ22.862025-11-12To be published
9VMY (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensTMU4142-2.862025-11-12To be published
9VNFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensPindolol-Go/β1/γ22.742025-11-12To be published
9VNF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensPindolol-2.742025-11-12To be published
9KVGAAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4PGi1/β1/γ22.632025-12-03To be published
9KVG (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4P2.632025-12-03To be published
9KVHAAmine5-Hydroxytryptamine5-HT1AHomo sapiensCinobufoteninePtdIns4PGi1/β1/γ22.592025-12-03To be published
9KVH (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensCinobufoteninePtdIns4P2.592025-12-03To be published
9KVIAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBufoteninPtdIns4PGi1/β1/γ22.542025-12-03To be published
9KVI (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBufoteninPtdIns4P2.542025-12-03To be published
9HYIAAmine5-Hydroxytryptamine5-HT1AHomo sapiensDP81-Gi1/β1/γ22.32026-01-21To be published
9HYI (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensDP81-2.32026-01-21To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8FYX_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.